Wall clock time and date at job start Mon Mar 30 2020 03:08:40 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31618 * 1 3 3 Si 1.86808 * 119.99797 * 2 1 4 4 H 1.48500 * 109.46749 * 239.99743 * 3 2 1 5 5 H 1.48500 * 109.47251 * 359.97438 * 3 2 1 6 6 H 1.48499 * 109.47034 * 120.00243 * 3 2 1 7 7 C 1.38803 * 119.99985 * 179.97438 * 2 1 3 8 8 H 1.07999 * 120.00064 * 167.83692 * 7 2 1 9 9 N 1.36934 * 120.00141 * 347.84024 * 7 2 1 10 10 C 1.46500 * 120.00099 * 308.07225 * 9 7 2 11 11 C 1.53005 * 117.49677 * 1.87169 * 10 9 7 12 12 C 1.53003 * 117.49764 * 293.21224 * 10 9 7 13 13 C 1.46504 * 120.00217 * 128.07617 * 9 7 2 14 14 C 1.54239 * 109.62912 * 59.99598 * 13 9 7 15 15 C 1.45542 * 112.40401 * 160.10899 * 14 13 9 16 16 C 1.54242 * 112.40395 * 61.94043 * 15 14 13 17 17 C 1.50471 * 108.68312 * 279.90796 * 16 15 14 18 18 C 1.54269 * 112.38471 * 93.93667 * 17 16 15 19 19 C 1.50477 * 109.78490 * 300.86801 * 13 9 7 20 20 H 0.97004 * 120.00176 * 355.29195 * 1 2 3 21 21 H 1.09003 * 115.55171 * 147.54000 * 10 9 7 22 22 H 1.08999 * 117.49889 * 359.97438 * 11 10 9 23 23 H 1.08994 * 117.49824 * 145.01908 * 11 10 9 24 24 H 1.09001 * 117.49508 * 214.97507 * 12 10 9 25 25 H 1.08992 * 117.50047 * 359.97438 * 12 10 9 26 26 H 1.08995 * 109.62462 * 180.38696 * 13 9 7 27 27 H 1.09004 * 108.89425 * 39.35778 * 14 13 9 28 28 H 1.08998 * 108.89923 * 280.86323 * 14 13 9 29 29 H 1.08995 * 108.90023 * 301.18261 * 15 14 13 30 30 H 1.09005 * 108.89393 * 182.69011 * 15 14 13 31 31 H 1.09004 * 109.63161 * 39.71841 * 16 15 14 32 32 H 1.09008 * 109.62655 * 160.10243 * 16 15 14 33 33 H 1.08997 * 108.88315 * 215.02831 * 17 16 15 34 34 H 1.08996 * 108.87754 * 333.47755 * 17 16 15 35 35 H 1.09000 * 108.83538 * 197.61916 * 18 17 16 36 36 H 1.08992 * 108.65595 * 79.41736 * 18 17 16 37 37 H 1.08996 * 108.87613 * 334.73471 * 19 13 9 38 38 H 1.09002 * 108.87639 * 93.17629 * 19 13 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6178 0.0000 4 1 3.1039 1.6964 -1.2125 5 1 1.2851 2.7465 -0.0006 6 1 3.1039 1.6965 1.2125 7 6 2.0102 -1.2021 0.0005 8 1 3.0720 -1.2127 -0.1965 9 7 1.3486 -2.3746 0.2509 10 6 0.5069 -2.5006 1.4433 11 6 0.3730 -1.2727 2.3464 12 6 1.2032 -2.4742 2.8055 13 6 1.4825 -3.5031 -0.6737 14 6 2.9631 -3.9257 -0.7645 15 6 3.1231 -5.2807 -1.2712 16 6 2.5770 -5.4405 -2.7048 17 6 1.0819 -5.5964 -2.6365 18 6 0.3428 -4.2531 -2.8070 19 6 1.0167 -3.0957 -2.0454 20 1 -0.4850 0.8372 0.0690 21 1 -0.3661 -3.1445 1.3367 22 1 0.9115 -0.3714 2.0535 23 1 -0.5879 -1.1092 2.8342 24 1 0.7880 -3.1004 3.5951 25 1 2.2875 -2.3635 2.8144 26 1 0.8835 -4.3412 -0.3176 27 1 3.4089 -3.8652 0.2284 28 1 3.4869 -3.2369 -1.4272 29 1 2.5930 -5.9687 -0.6127 30 1 4.1827 -5.5364 -1.2665 31 1 2.8265 -4.5570 -3.2924 32 1 3.0165 -6.3242 -3.1676 33 1 0.7626 -6.2829 -3.4206 34 1 0.8155 -6.0211 -1.6686 35 1 -0.6789 -4.3650 -2.4439 36 1 0.3113 -4.0047 -3.8677 37 1 0.3047 -2.2763 -1.9471 38 1 1.8748 -2.7477 -2.6203 RHF calculation, no. of doubly occupied orbitals= 43 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000261129663.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:08:40 Heat of formation + Delta-G solvation = 31.264615 kcal Electronic energy + Delta-G solvation = -16532.892444 eV Core-core repulsion = 14183.135024 eV Total energy + Delta-G solvation = -2349.757420 eV No. of doubly occupied orbitals = 43 Molecular weight (most abundant/longest-lived isotopes) = 223.163 amu Computer time = 0.31 seconds Orbital eigenvalues (eV) -38.49260 -36.36727 -32.82651 -31.81963 -31.58595 -28.55495 -24.69742 -23.88170 -22.94834 -20.90216 -19.90357 -19.67547 -18.51487 -16.11092 -15.61167 -14.54430 -14.42786 -14.05547 -13.78751 -13.61868 -12.98657 -12.65149 -12.32139 -11.71800 -11.57314 -11.43528 -11.13077 -10.91724 -10.63225 -10.34131 -10.18668 -10.12605 -10.08018 -9.93227 -9.84862 -9.41823 -9.38668 -9.09777 -8.77404 -8.10450 -6.26257 -5.63892 -3.50169 3.35932 3.41638 3.44258 4.46714 5.10987 5.19097 5.30105 5.34912 5.48948 5.53976 5.78751 5.85206 5.92844 6.00304 6.13527 6.24535 6.28661 6.37609 6.46467 6.51623 6.60674 6.64072 6.69914 6.74454 6.78033 6.81047 6.82908 7.05310 7.11437 7.17258 7.33012 7.37748 7.59855 7.73853 7.88476 8.69459 9.31527 9.82904 10.52399 11.24810 Molecular weight = 223.16amu Principal moments of inertia in cm(-1) A = 0.028500 B = 0.010121 C = 0.009128 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 982.211310 B = 2765.914481 C = 3066.590262 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.870 5.870 2 C 0.035 3.965 3 Si 0.883 3.117 4 H -0.279 1.279 5 H -0.289 1.289 6 H -0.281 1.281 7 C -0.268 4.268 8 H 0.052 0.948 9 N -0.551 5.551 10 C 0.153 3.847 11 C -0.150 4.150 12 C -0.249 4.249 13 C 0.190 3.810 14 C -0.128 4.128 15 C -0.108 4.108 16 C -0.116 4.116 17 C -0.116 4.116 18 C -0.114 4.114 19 C -0.120 4.120 20 H 0.253 0.747 21 H 0.074 0.926 22 H 0.107 0.893 23 H 0.061 0.939 24 H 0.062 0.938 25 H 0.078 0.922 26 H 0.047 0.953 27 H 0.054 0.946 28 H 0.053 0.947 29 H 0.052 0.948 30 H 0.046 0.954 31 H 0.065 0.935 32 H 0.050 0.950 33 H 0.047 0.953 34 H 0.057 0.943 35 H 0.050 0.950 36 H 0.046 0.954 37 H 0.079 0.921 38 H 0.047 0.953 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.857 -8.172 -2.376 8.710 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.509 5.509 2 C -0.167 4.167 3 Si 0.711 3.289 4 H -0.205 1.205 5 H -0.215 1.215 6 H -0.207 1.207 7 C -0.399 4.399 8 H 0.069 0.931 9 N -0.268 5.268 10 C 0.044 3.956 11 C -0.188 4.188 12 C -0.290 4.290 13 C 0.083 3.917 14 C -0.167 4.167 15 C -0.146 4.146 16 C -0.153 4.153 17 C -0.153 4.153 18 C -0.152 4.152 19 C -0.159 4.159 20 H 0.064 0.936 21 H 0.092 0.908 22 H 0.125 0.875 23 H 0.080 0.920 24 H 0.080 0.920 25 H 0.097 0.903 26 H 0.065 0.935 27 H 0.073 0.927 28 H 0.072 0.928 29 H 0.071 0.929 30 H 0.065 0.935 31 H 0.083 0.917 32 H 0.069 0.931 33 H 0.066 0.934 34 H 0.076 0.924 35 H 0.069 0.931 36 H 0.065 0.935 37 H 0.098 0.902 38 H 0.065 0.935 Dipole moment (debyes) X Y Z Total from point charges 1.698 -8.021 -2.484 8.567 hybrid contribution 0.414 1.077 0.111 1.159 sum 2.112 -6.944 -2.373 7.636 Atomic orbital electron populations 1.70102 1.05302 1.25859 1.49651 1.25458 0.95015 0.98483 0.97789 0.86735 0.79563 0.84103 0.78474 1.20535 1.21521 1.20674 1.18680 0.90588 0.84082 1.46502 0.93084 1.43279 1.53812 1.10388 1.19324 1.20638 0.93401 0.98935 0.82639 1.22929 0.98775 0.94448 1.02646 1.23534 0.98928 1.04867 1.01689 1.19978 0.92392 0.89642 0.89641 1.20890 1.00038 0.95195 1.00624 1.20451 0.99659 0.98563 0.95887 1.21327 0.95714 1.00999 0.97304 1.21362 0.95459 0.97462 1.01055 1.21960 0.98894 0.94867 0.99490 1.21783 1.00637 0.97070 0.96442 0.93640 0.90845 0.87508 0.92035 0.91978 0.90341 0.93509 0.92738 0.92783 0.92944 0.93538 0.91668 0.93099 0.93423 0.92431 0.93101 0.93506 0.90231 0.93463 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.87 -24.10 11.33 55.49 0.63 -23.47 16 2 C 0.04 0.94 3.20 -17.43 -0.06 0.88 16 3 Si 0.88 21.12 29.52 -169.99 -5.02 16.10 16 4 H -0.28 -6.67 7.11 56.52 0.40 -6.27 16 5 H -0.29 -6.97 7.11 56.52 0.40 -6.57 16 6 H -0.28 -6.71 7.11 56.52 0.40 -6.31 16 7 C -0.27 -7.08 7.77 -15.06 -0.12 -7.20 16 8 H 0.05 1.39 7.68 -52.49 -0.40 0.99 16 9 N -0.55 -13.39 2.46 -158.84 -0.39 -13.78 16 10 C 0.15 3.60 5.95 -67.93 -0.40 3.20 16 11 C -0.15 -3.55 8.26 -26.69 -0.22 -3.77 16 12 C -0.25 -5.40 10.38 -26.69 -0.28 -5.68 16 13 C 0.19 3.96 2.33 -68.54 -0.16 3.80 16 14 C -0.13 -2.41 4.21 -29.60 -0.12 -2.53 16 15 C -0.11 -1.65 5.26 -29.60 -0.16 -1.80 16 16 C -0.12 -1.64 5.59 -27.34 -0.15 -1.79 16 17 C -0.12 -1.66 5.34 -27.33 -0.15 -1.81 16 18 C -0.11 -1.88 5.85 -25.51 -0.15 -2.03 16 19 C -0.12 -2.45 4.47 -27.44 -0.12 -2.57 16 20 H 0.25 6.88 8.32 -40.82 -0.34 6.54 16 21 H 0.07 1.68 8.14 -51.93 -0.42 1.26 16 22 H 0.11 2.81 5.13 -51.93 -0.27 2.54 16 23 H 0.06 1.38 8.14 -51.93 -0.42 0.95 16 24 H 0.06 1.19 8.14 -51.93 -0.42 0.77 16 25 H 0.08 1.77 8.14 -51.93 -0.42 1.35 16 26 H 0.05 0.95 6.78 -51.93 -0.35 0.60 16 27 H 0.05 1.09 8.12 -51.93 -0.42 0.67 16 28 H 0.05 1.07 7.47 -51.93 -0.39 0.68 16 29 H 0.05 0.78 7.48 -51.93 -0.39 0.39 16 30 H 0.05 0.65 8.14 -51.93 -0.42 0.23 16 31 H 0.06 0.98 6.98 -51.93 -0.36 0.62 16 32 H 0.05 0.62 8.14 -51.92 -0.42 0.20 16 33 H 0.05 0.60 8.14 -51.93 -0.42 0.18 16 34 H 0.06 0.83 6.65 -51.93 -0.35 0.49 16 35 H 0.05 0.84 8.14 -51.93 -0.42 0.42 16 36 H 0.05 0.72 8.14 -51.93 -0.42 0.30 16 37 H 0.08 1.94 7.88 -51.93 -0.41 1.53 16 38 H 0.05 0.98 6.63 -51.93 -0.34 0.63 16 LS Contribution 285.65 15.07 4.30 4.30 Total: -1.00 -26.77 285.65 -9.18 -35.95 By element: Atomic # 1 Polarization: 8.80 SS G_CDS: -6.62 Total: 2.18 kcal Atomic # 6 Polarization: -19.21 SS G_CDS: -2.09 Total: -21.29 kcal Atomic # 7 Polarization: -37.49 SS G_CDS: 0.24 Total: -37.25 kcal Atomic # 14 Polarization: 21.12 SS G_CDS: -5.02 Total: 16.10 kcal Total LS contribution 4.30 Total: 4.30 kcal Total: -26.77 -9.18 -35.95 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000261129663.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 67.219 kcal (2) G-P(sol) polarization free energy of solvation -26.772 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 40.447 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.182 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.954 kcal (6) G-S(sol) free energy of system = (1) + (5) 31.265 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.31 seconds