Wall clock time and date at job start Mon Mar 30 2020 03:08:40 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31618 * 1 3 3 Si 1.86808 * 119.99797 * 2 1 4 4 H 1.48500 * 109.46749 * 239.99743 * 3 2 1 5 5 H 1.48500 * 109.47251 * 359.97438 * 3 2 1 6 6 H 1.48499 * 109.47034 * 120.00243 * 3 2 1 7 7 C 1.38803 * 119.99985 * 179.97438 * 2 1 3 8 8 H 1.07999 * 120.00064 * 167.83692 * 7 2 1 9 9 N 1.36934 * 120.00141 * 347.84024 * 7 2 1 10 10 C 1.46500 * 120.00099 * 308.07225 * 9 7 2 11 11 C 1.53005 * 117.49677 * 1.87169 * 10 9 7 12 12 C 1.53003 * 117.49764 * 293.21224 * 10 9 7 13 13 C 1.46504 * 120.00217 * 128.07617 * 9 7 2 14 14 C 1.54239 * 109.62912 * 59.99598 * 13 9 7 15 15 C 1.45542 * 112.40401 * 160.10899 * 14 13 9 16 16 C 1.54242 * 112.40395 * 61.94043 * 15 14 13 17 17 C 1.50471 * 108.68312 * 279.90796 * 16 15 14 18 18 C 1.54269 * 112.38471 * 93.93667 * 17 16 15 19 19 C 1.50477 * 109.78490 * 300.86801 * 13 9 7 20 20 H 0.97004 * 120.00176 * 355.29195 * 1 2 3 21 21 H 1.09003 * 115.55171 * 147.54000 * 10 9 7 22 22 H 1.08999 * 117.49889 * 359.97438 * 11 10 9 23 23 H 1.08994 * 117.49824 * 145.01908 * 11 10 9 24 24 H 1.09001 * 117.49508 * 214.97507 * 12 10 9 25 25 H 1.08992 * 117.50047 * 359.97438 * 12 10 9 26 26 H 1.08995 * 109.62462 * 180.38696 * 13 9 7 27 27 H 1.09004 * 108.89425 * 39.35778 * 14 13 9 28 28 H 1.08998 * 108.89923 * 280.86323 * 14 13 9 29 29 H 1.08995 * 108.90023 * 301.18261 * 15 14 13 30 30 H 1.09005 * 108.89393 * 182.69011 * 15 14 13 31 31 H 1.09004 * 109.63161 * 39.71841 * 16 15 14 32 32 H 1.09008 * 109.62655 * 160.10243 * 16 15 14 33 33 H 1.08997 * 108.88315 * 215.02831 * 17 16 15 34 34 H 1.08996 * 108.87754 * 333.47755 * 17 16 15 35 35 H 1.09000 * 108.83538 * 197.61916 * 18 17 16 36 36 H 1.08992 * 108.65595 * 79.41736 * 18 17 16 37 37 H 1.08996 * 108.87613 * 334.73471 * 19 13 9 38 38 H 1.09002 * 108.87639 * 93.17629 * 19 13 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6178 0.0000 4 1 3.1039 1.6964 -1.2125 5 1 1.2851 2.7465 -0.0006 6 1 3.1039 1.6965 1.2125 7 6 2.0102 -1.2021 0.0005 8 1 3.0720 -1.2127 -0.1965 9 7 1.3486 -2.3746 0.2509 10 6 0.5069 -2.5006 1.4433 11 6 0.3730 -1.2727 2.3464 12 6 1.2032 -2.4742 2.8055 13 6 1.4825 -3.5031 -0.6737 14 6 2.9631 -3.9257 -0.7645 15 6 3.1231 -5.2807 -1.2712 16 6 2.5770 -5.4405 -2.7048 17 6 1.0819 -5.5964 -2.6365 18 6 0.3428 -4.2531 -2.8070 19 6 1.0167 -3.0957 -2.0454 20 1 -0.4850 0.8372 0.0690 21 1 -0.3661 -3.1445 1.3367 22 1 0.9115 -0.3714 2.0535 23 1 -0.5879 -1.1092 2.8342 24 1 0.7880 -3.1004 3.5951 25 1 2.2875 -2.3635 2.8144 26 1 0.8835 -4.3412 -0.3176 27 1 3.4089 -3.8652 0.2284 28 1 3.4869 -3.2369 -1.4272 29 1 2.5930 -5.9687 -0.6127 30 1 4.1827 -5.5364 -1.2665 31 1 2.8265 -4.5570 -3.2924 32 1 3.0165 -6.3242 -3.1676 33 1 0.7626 -6.2829 -3.4206 34 1 0.8155 -6.0211 -1.6686 35 1 -0.6789 -4.3650 -2.4439 36 1 0.3113 -4.0047 -3.8677 37 1 0.3047 -2.2763 -1.9471 38 1 1.8748 -2.7477 -2.6203 RHF calculation, no. of doubly occupied orbitals= 43 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000261129663.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:08:40 Heat of formation + Delta-G solvation = 18.900795 kcal Electronic energy + Delta-G solvation = -16533.428579 eV Core-core repulsion = 14183.135024 eV Total energy + Delta-G solvation = -2350.293555 eV No. of doubly occupied orbitals = 43 Molecular weight (most abundant/longest-lived isotopes) = 223.163 amu Computer time = 0.31 seconds Orbital eigenvalues (eV) -40.02962 -38.09193 -34.57070 -33.52407 -33.13597 -30.24772 -26.60985 -25.27522 -24.47654 -22.72600 -21.71528 -21.18182 -19.99455 -18.07960 -17.25756 -16.48881 -15.94714 -15.46476 -15.41080 -15.20626 -14.61293 -14.21063 -13.79742 -13.46775 -13.13367 -13.09168 -12.85741 -12.79496 -12.38709 -12.05178 -11.98483 -11.73650 -11.58351 -11.38948 -11.19409 -11.03267 -10.97402 -10.76938 -10.60650 -10.13048 -8.26372 -7.62595 -5.56573 1.42122 1.44443 1.49411 2.48313 3.26318 3.52303 3.63189 3.88656 4.05603 4.22801 4.44352 4.45632 4.49299 4.52240 4.65527 4.71563 4.76025 4.81872 4.86084 5.02610 5.04557 5.11480 5.22022 5.29281 5.32755 5.42188 5.47816 5.51350 5.56222 5.57580 5.69735 5.74143 5.75173 5.82360 5.87046 6.62296 7.31713 7.91145 8.52916 9.18200 Molecular weight = 223.16amu Principal moments of inertia in cm(-1) A = 0.028500 B = 0.010121 C = 0.009128 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 982.211310 B = 2765.914481 C = 3066.590262 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.893 5.893 2 C 0.000 4.000 3 Si 0.933 3.067 4 H -0.278 1.278 5 H -0.291 1.291 6 H -0.279 1.279 7 C -0.270 4.270 8 H 0.038 0.962 9 N -0.566 5.566 10 C 0.135 3.865 11 C -0.160 4.160 12 C -0.220 4.220 13 C 0.185 3.815 14 C -0.113 4.113 15 C -0.107 4.107 16 C -0.113 4.113 17 C -0.111 4.111 18 C -0.109 4.109 19 C -0.108 4.108 20 H 0.249 0.751 21 H 0.080 0.920 22 H 0.079 0.921 23 H 0.071 0.929 24 H 0.094 0.906 25 H 0.067 0.933 26 H 0.055 0.945 27 H 0.037 0.963 28 H 0.035 0.965 29 H 0.062 0.938 30 H 0.063 0.937 31 H 0.052 0.948 32 H 0.080 0.920 33 H 0.074 0.926 34 H 0.058 0.942 35 H 0.048 0.952 36 H 0.057 0.943 37 H 0.031 0.969 38 H 0.035 0.965 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.315 -10.057 -2.592 10.640 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.533 5.533 2 C -0.200 4.200 3 Si 0.760 3.240 4 H -0.203 1.203 5 H -0.217 1.217 6 H -0.205 1.205 7 C -0.401 4.401 8 H 0.056 0.944 9 N -0.284 5.284 10 C 0.026 3.974 11 C -0.199 4.199 12 C -0.261 4.261 13 C 0.080 3.920 14 C -0.152 4.152 15 C -0.145 4.145 16 C -0.150 4.150 17 C -0.149 4.149 18 C -0.147 4.147 19 C -0.147 4.147 20 H 0.058 0.942 21 H 0.097 0.903 22 H 0.097 0.903 23 H 0.089 0.911 24 H 0.113 0.887 25 H 0.086 0.914 26 H 0.073 0.927 27 H 0.056 0.944 28 H 0.054 0.946 29 H 0.080 0.920 30 H 0.082 0.918 31 H 0.071 0.929 32 H 0.098 0.902 33 H 0.093 0.907 34 H 0.077 0.923 35 H 0.067 0.933 36 H 0.075 0.925 37 H 0.050 0.950 38 H 0.054 0.946 Dipole moment (debyes) X Y Z Total from point charges 2.170 -9.921 -2.703 10.509 hybrid contribution 0.275 1.652 0.187 1.685 sum 2.445 -8.268 -2.516 8.982 Atomic orbital electron populations 1.70203 1.06251 1.25942 1.50949 1.25913 0.95552 1.00648 0.97896 0.85946 0.78484 0.81231 0.78308 1.20348 1.21656 1.20541 1.18684 0.90156 0.85256 1.45969 0.94426 1.43482 1.53741 1.10709 1.20421 1.20802 0.94094 0.99171 0.83309 1.22801 0.99445 0.93875 1.03757 1.23460 0.98041 1.03420 1.01169 1.20158 0.93962 0.88770 0.89137 1.20734 0.97868 0.97151 0.99473 1.20420 1.01125 0.96068 0.96859 1.21318 0.95644 1.01806 0.96266 1.21341 0.95289 0.96069 1.02186 1.21896 0.98662 0.94818 0.99340 1.21603 0.99038 0.97293 0.96766 0.94169 0.90261 0.90284 0.91083 0.88726 0.91429 0.92729 0.94396 0.94611 0.91951 0.91834 0.92927 0.90151 0.90698 0.92310 0.93265 0.92451 0.94997 0.94607 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -50.68 11.33 21.65 0.25 -50.43 16 2 C 0.00 0.01 3.20 84.86 0.27 0.29 16 3 Si 0.93 44.23 29.52 68.60 2.03 46.26 16 4 H -0.28 -12.98 7.11 99.48 0.71 -12.27 16 5 H -0.29 -13.76 7.11 99.48 0.71 -13.05 16 6 H -0.28 -13.09 7.11 99.48 0.71 -12.39 16 7 C -0.27 -14.57 7.77 84.03 0.65 -13.92 16 8 H 0.04 2.12 7.68 -2.91 -0.02 2.09 16 9 N -0.57 -27.85 2.46 -656.43 -1.62 -29.47 16 10 C 0.13 6.33 5.95 44.99 0.27 6.60 16 11 C -0.16 -7.60 8.26 30.62 0.25 -7.35 16 12 C -0.22 -9.25 10.38 30.62 0.32 -8.93 16 13 C 0.19 7.71 2.33 44.59 0.10 7.82 16 14 C -0.11 -4.18 4.21 28.74 0.12 -4.06 16 15 C -0.11 -3.00 5.26 28.74 0.15 -2.84 16 16 C -0.11 -2.83 5.59 30.20 0.17 -2.66 16 17 C -0.11 -2.83 5.34 30.21 0.16 -2.67 16 18 C -0.11 -3.45 5.85 31.38 0.18 -3.26 16 19 C -0.11 -4.44 4.47 30.14 0.13 -4.31 16 20 H 0.25 13.85 8.32 -92.71 -0.77 13.08 16 21 H 0.08 3.59 8.14 -2.39 -0.02 3.57 16 22 H 0.08 4.22 5.13 -2.39 -0.01 4.21 16 23 H 0.07 3.16 8.14 -2.39 -0.02 3.14 16 24 H 0.09 3.36 8.14 -2.39 -0.02 3.34 16 25 H 0.07 2.99 8.14 -2.39 -0.02 2.97 16 26 H 0.05 2.17 6.78 -2.39 -0.02 2.15 16 27 H 0.04 1.50 8.12 -2.39 -0.02 1.48 16 28 H 0.04 1.42 7.47 -2.39 -0.02 1.40 16 29 H 0.06 1.65 7.48 -2.39 -0.02 1.64 16 30 H 0.06 1.59 8.14 -2.38 -0.02 1.57 16 31 H 0.05 1.47 6.98 -2.38 -0.02 1.45 16 32 H 0.08 1.60 8.14 -2.38 -0.02 1.58 16 33 H 0.07 1.55 8.14 -2.39 -0.02 1.53 16 34 H 0.06 1.50 6.65 -2.39 -0.02 1.48 16 35 H 0.05 1.56 8.14 -2.39 -0.02 1.54 16 36 H 0.06 1.68 8.14 -2.39 -0.02 1.66 16 37 H 0.03 1.60 7.88 -2.39 -0.02 1.58 16 38 H 0.04 1.51 6.63 -2.39 -0.02 1.49 16 Total: -1.00 -58.12 285.65 4.44 -53.68 By element: Atomic # 1 Polarization: 14.25 SS G_CDS: 1.00 Total: 15.25 kcal Atomic # 6 Polarization: -38.08 SS G_CDS: 2.79 Total: -35.29 kcal Atomic # 7 Polarization: -78.53 SS G_CDS: -1.37 Total: -79.90 kcal Atomic # 14 Polarization: 44.23 SS G_CDS: 2.03 Total: 46.26 kcal Total: -58.12 4.44 -53.68 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000261129663.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 72.582 kcal (2) G-P(sol) polarization free energy of solvation -58.124 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 14.458 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.443 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -53.681 kcal (6) G-S(sol) free energy of system = (1) + (5) 18.901 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.32 seconds