Wall clock time and date at job start Mon Mar 30 2020 03:06:04 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31514 * 1 3 3 Si 1.86796 * 120.00166 * 2 1 4 4 H 1.48500 * 109.47043 * 264.91193 * 3 2 1 5 5 H 1.48504 * 109.47080 * 24.90461 * 3 2 1 6 6 H 1.48498 * 109.47364 * 144.90810 * 3 2 1 7 7 C 1.37873 * 119.99975 * 179.97438 * 2 1 3 8 8 H 1.08009 * 119.99846 * 6.52546 * 7 2 1 9 9 C 1.50693 * 120.00324 * 186.52262 * 7 2 1 10 10 N 1.46901 * 112.84903 * 64.82526 * 9 7 2 11 11 C 1.46897 * 110.99989 * 53.96108 * 10 9 7 12 12 C 1.53001 * 109.47297 * 209.18006 * 11 10 9 13 13 C 1.53003 * 109.47062 * 180.02562 * 12 11 10 14 14 C 1.52996 * 109.47155 * 60.00664 * 13 12 11 15 15 C 1.53002 * 109.47021 * 299.99954 * 14 13 12 16 16 C 1.52997 * 109.47311 * 59.99771 * 15 14 13 17 17 C 1.53778 * 113.69602 * 196.09094 * 9 7 2 18 18 C 1.53780 * 87.07998 * 89.12711 * 17 9 7 19 19 C 1.53780 * 113.61625 * 293.63071 * 9 7 2 20 20 H 0.97001 * 120.00177 * 0.02562 * 1 2 3 21 21 H 1.00902 * 111.00633 * 177.91728 * 10 9 7 22 22 H 1.08995 * 109.47546 * 329.18451 * 11 10 9 23 23 H 1.09001 * 109.47116 * 60.00388 * 12 11 10 24 24 H 1.08997 * 109.47664 * 300.00450 * 12 11 10 25 25 H 1.09005 * 109.46847 * 180.02562 * 13 12 11 26 26 H 1.08998 * 109.47341 * 299.99909 * 13 12 11 27 27 H 1.08998 * 109.47613 * 59.99411 * 14 13 12 28 28 H 1.08999 * 109.47561 * 180.02562 * 14 13 12 29 29 H 1.09001 * 109.47050 * 180.02562 * 15 14 13 30 30 H 1.09009 * 109.46948 * 300.00196 * 15 14 13 31 31 H 1.08995 * 109.47327 * 60.00275 * 16 15 14 32 32 H 1.09003 * 109.47414 * 180.02562 * 16 15 14 33 33 H 1.09003 * 113.62054 * 203.67722 * 17 9 7 34 34 H 1.08999 * 113.61252 * 334.58029 * 17 9 7 35 35 H 1.09001 * 113.61549 * 270.88352 * 18 17 9 36 36 H 1.09007 * 113.69030 * 139.99192 * 18 17 9 37 37 H 1.09000 * 113.61364 * 25.34221 * 19 9 7 38 38 H 1.08998 * 113.61558 * 156.24783 * 19 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 2.6042 1.9842 -1.3946 5 1 1.3969 2.6813 0.5896 6 1 3.4888 1.4736 0.8049 7 6 2.0045 -1.1940 0.0005 8 1 1.4697 -2.1264 -0.1054 9 6 3.5041 -1.1983 0.1488 10 7 3.9497 -0.6940 1.4546 11 6 3.2975 -1.4227 2.5507 12 6 3.1697 -0.5050 3.7683 13 6 2.4910 -1.2642 4.9102 14 6 3.3320 -2.4877 5.2799 15 6 3.4599 -3.4054 4.0624 16 6 4.1385 -2.6462 2.9205 17 6 4.1612 -2.5288 -0.2544 18 6 4.2507 -1.9618 -1.6811 19 6 4.2426 -0.5634 -1.0413 20 1 -0.4850 0.8400 -0.0004 21 1 4.9543 -0.7406 1.5367 22 1 2.3060 -1.7454 2.2333 23 1 2.5709 0.3669 3.5049 24 1 4.1612 -0.1823 4.0858 25 1 2.3995 -0.6102 5.7775 26 1 1.4994 -1.5872 4.5930 27 1 4.3235 -2.1647 5.5971 28 1 2.8483 -3.0289 6.0931 29 1 4.0587 -4.2773 4.3259 30 1 2.4683 -3.7284 3.7451 31 1 5.1300 -2.3232 3.2377 32 1 4.2293 -3.2999 2.0530 33 1 5.1327 -2.6949 0.2112 34 1 3.4965 -3.3882 -0.1671 35 1 3.3702 -2.1688 -2.2893 36 1 5.1835 -2.2034 -2.1907 37 1 3.6436 0.1640 -1.5892 38 1 5.2363 -0.1921 -0.7908 RHF calculation, no. of doubly occupied orbitals= 43 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000261165827.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:06:04 Heat of formation + Delta-G solvation = -14.695804 kcal Electronic energy + Delta-G solvation = -16622.622692 eV Core-core repulsion = 14270.872279 eV Total energy + Delta-G solvation = -2351.750413 eV No. of doubly occupied orbitals = 43 Molecular weight (most abundant/longest-lived isotopes) = 223.163 amu Computer time = 0.32 seconds Orbital eigenvalues (eV) -40.58559 -38.68740 -34.39910 -33.97603 -31.52432 -29.44530 -27.74503 -26.44207 -24.00223 -23.21707 -22.11392 -20.85909 -19.98988 -18.08870 -17.01186 -16.64310 -16.15852 -15.37592 -15.16448 -14.99959 -14.79264 -14.37045 -13.87596 -13.65377 -13.39590 -13.04300 -12.81454 -12.63492 -12.42711 -12.02333 -11.93491 -11.85151 -11.80195 -11.61036 -11.35078 -11.26347 -11.03342 -10.76288 -10.71615 -10.39233 -8.65301 -8.23731 -6.30096 1.43312 1.50041 1.80206 2.54759 3.12238 3.61365 3.94891 4.00771 4.09742 4.11605 4.19711 4.31630 4.44212 4.50602 4.58801 4.71696 4.74403 4.85058 4.87082 4.92197 4.93638 5.02564 5.14569 5.19588 5.28600 5.32145 5.33156 5.39525 5.40123 5.44655 5.60341 5.65124 5.78719 5.85778 6.13511 6.70059 6.74867 7.19304 7.45136 8.90223 Molecular weight = 223.16amu Principal moments of inertia in cm(-1) A = 0.025364 B = 0.012410 C = 0.009966 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1103.677309 B = 2255.624658 C = 2808.973190 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.950 5.950 2 C 0.036 3.964 3 Si 0.929 3.071 4 H -0.290 1.290 5 H -0.321 1.321 6 H -0.188 1.188 7 C -0.482 4.482 8 H 0.024 0.976 9 C 0.198 3.802 10 N -0.681 5.681 11 C 0.098 3.902 12 C -0.101 4.101 13 C -0.118 4.118 14 C -0.108 4.108 15 C -0.115 4.115 16 C -0.136 4.136 17 C -0.154 4.154 18 C -0.119 4.119 19 C -0.149 4.149 20 H 0.260 0.740 21 H 0.329 0.671 22 H 0.049 0.951 23 H 0.032 0.968 24 H 0.069 0.931 25 H 0.072 0.928 26 H 0.039 0.961 27 H 0.074 0.926 28 H 0.071 0.929 29 H 0.075 0.925 30 H 0.040 0.960 31 H 0.072 0.928 32 H 0.053 0.947 33 H 0.088 0.912 34 H 0.037 0.963 35 H 0.057 0.943 36 H 0.082 0.918 37 H 0.038 0.962 38 H 0.088 0.912 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 11.962 -3.600 7.526 14.584 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.590 5.590 2 C -0.162 4.162 3 Si 0.756 3.244 4 H -0.217 1.217 5 H -0.251 1.251 6 H -0.109 1.109 7 C -0.520 4.520 8 H 0.042 0.958 9 C 0.108 3.892 10 N -0.309 5.309 11 C -0.012 4.012 12 C -0.139 4.139 13 C -0.156 4.156 14 C -0.145 4.145 15 C -0.153 4.153 16 C -0.175 4.175 17 C -0.193 4.193 18 C -0.157 4.157 19 C -0.187 4.187 20 H 0.068 0.932 21 H 0.148 0.852 22 H 0.067 0.933 23 H 0.051 0.949 24 H 0.088 0.912 25 H 0.091 0.909 26 H 0.058 0.942 27 H 0.092 0.908 28 H 0.090 0.910 29 H 0.093 0.907 30 H 0.059 0.941 31 H 0.091 0.909 32 H 0.072 0.928 33 H 0.106 0.894 34 H 0.056 0.944 35 H 0.076 0.924 36 H 0.101 0.899 37 H 0.057 0.943 38 H 0.106 0.894 Dipole moment (debyes) X Y Z Total from point charges 11.386 -2.976 7.549 13.982 hybrid contribution -0.370 -0.018 -0.551 0.664 sum 11.016 -2.994 6.998 13.390 Atomic orbital electron populations 1.70093 1.08608 1.27706 1.52571 1.25630 0.94799 1.02968 0.92835 0.86162 0.82376 0.77569 0.78279 1.21727 1.25056 1.10873 1.20494 0.90185 0.92121 1.49228 0.95802 1.20004 0.92210 0.90994 0.86009 1.60737 1.09771 1.57955 1.02472 1.21282 0.97850 0.91744 0.90308 1.21450 1.00349 0.97514 0.94583 1.21524 0.98524 0.97709 0.97844 1.21474 1.00448 0.95448 0.97177 1.21480 1.00023 0.98402 0.95416 1.22222 0.99377 0.97493 0.98399 1.23553 0.99780 0.98427 0.97579 1.22436 1.00961 0.96209 0.96046 1.23304 0.99839 0.96802 0.98745 0.93160 0.85210 0.93296 0.94938 0.91217 0.90925 0.94228 0.90779 0.91040 0.90655 0.94073 0.90939 0.92849 0.89396 0.94362 0.92417 0.89899 0.94296 0.89364 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.95 -60.64 13.96 21.45 0.30 -60.34 16 2 C 0.04 2.12 5.47 84.65 0.46 2.59 16 3 Si 0.93 46.40 24.53 68.60 1.68 48.08 16 4 H -0.29 -14.26 6.86 99.48 0.68 -13.57 16 5 H -0.32 -16.70 7.11 99.48 0.71 -15.99 16 6 H -0.19 -8.49 5.82 99.48 0.58 -7.91 16 7 C -0.48 -26.98 6.99 25.60 0.18 -26.80 16 8 H 0.02 1.52 8.05 -2.91 -0.02 1.49 16 9 C 0.20 8.60 0.30 3.30 0.00 8.60 16 10 N -0.68 -26.69 4.04 -449.39 -1.82 -28.50 16 11 C 0.10 3.72 2.31 44.92 0.10 3.82 16 12 C -0.10 -3.45 5.53 30.60 0.17 -3.28 16 13 C -0.12 -3.45 5.92 30.59 0.18 -3.26 16 14 C -0.11 -2.58 5.92 30.59 0.18 -2.39 16 15 C -0.12 -3.07 5.92 30.59 0.18 -2.89 16 16 C -0.14 -4.07 5.02 30.60 0.15 -3.92 16 17 C -0.15 -5.71 5.49 31.12 0.17 -5.54 16 18 C -0.12 -4.30 7.80 31.12 0.24 -4.06 16 19 C -0.15 -5.89 6.11 31.12 0.19 -5.70 16 20 H 0.26 15.86 8.31 -92.71 -0.77 15.09 16 21 H 0.33 10.92 8.32 -89.69 -0.75 10.17 16 22 H 0.05 2.38 6.36 -2.39 -0.02 2.36 16 23 H 0.03 1.28 8.14 -2.39 -0.02 1.26 16 24 H 0.07 2.07 8.14 -2.39 -0.02 2.05 16 25 H 0.07 1.84 8.14 -2.38 -0.02 1.82 16 26 H 0.04 1.32 8.14 -2.39 -0.02 1.30 16 27 H 0.07 1.54 8.14 -2.39 -0.02 1.52 16 28 H 0.07 1.48 8.14 -2.39 -0.02 1.46 16 29 H 0.07 1.67 8.14 -2.39 -0.02 1.65 16 30 H 0.04 1.26 8.14 -2.38 -0.02 1.24 16 31 H 0.07 1.86 8.12 -2.39 -0.02 1.84 16 32 H 0.05 1.69 5.98 -2.39 -0.01 1.67 16 33 H 0.09 2.72 7.71 -2.39 -0.02 2.70 16 34 H 0.04 1.54 8.09 -2.39 -0.02 1.52 16 35 H 0.06 2.33 8.14 -2.39 -0.02 2.31 16 36 H 0.08 2.40 8.14 -2.38 -0.02 2.38 16 37 H 0.04 1.73 5.49 -2.39 -0.01 1.71 16 38 H 0.09 2.96 8.14 -2.39 -0.02 2.94 16 Total: -1.00 -65.05 281.11 2.50 -62.55 By element: Atomic # 1 Polarization: 20.92 SS G_CDS: 0.11 Total: 21.03 kcal Atomic # 6 Polarization: -45.04 SS G_CDS: 2.22 Total: -42.82 kcal Atomic # 7 Polarization: -87.32 SS G_CDS: -1.52 Total: -88.84 kcal Atomic # 14 Polarization: 46.40 SS G_CDS: 1.68 Total: 48.08 kcal Total: -65.05 2.50 -62.55 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000261165827.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 47.858 kcal (2) G-P(sol) polarization free energy of solvation -65.052 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -17.194 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.498 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.553 kcal (6) G-S(sol) free energy of system = (1) + (5) -14.696 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.32 seconds