Wall clock time and date at job start Mon Mar 30 2020 03:04:53 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31508 * 1 3 3 Si 1.86797 * 120.00427 * 2 1 4 4 H 1.48506 * 109.47171 * 240.00319 * 3 2 1 5 5 H 1.48497 * 109.47502 * 120.00116 * 3 2 1 6 6 H 1.48506 * 109.47035 * 359.97438 * 3 2 1 7 7 C 1.37878 * 119.99791 * 180.02562 * 2 1 3 8 8 H 1.08002 * 120.00045 * 179.97438 * 7 2 1 9 9 C 1.50702 * 120.00194 * 359.97438 * 7 2 1 10 10 H 1.08997 * 109.90758 * 59.77726 * 9 7 2 11 11 N 1.47904 * 109.91492 * 298.67731 * 9 7 2 12 12 C 1.48534 * 105.81961 * 215.31391 * 11 9 7 13 13 C 1.54936 * 103.22655 * 39.20594 * 12 11 9 14 14 C 1.53996 * 109.91938 * 181.08480 * 9 7 2 15 15 H 1.08997 * 110.30752 * 239.49187 * 14 9 7 16 16 C 1.52998 * 110.30542 * 1.66151 * 14 9 7 17 17 C 1.53002 * 109.46569 * 188.32958 * 16 14 9 18 18 C 1.53009 * 109.47073 * 180.02562 * 17 16 14 19 19 C 1.52998 * 109.46789 * 60.00089 * 18 17 16 20 20 C 1.52996 * 109.47708 * 300.00215 * 19 18 17 21 21 C 1.53002 * 109.47173 * 68.33732 * 16 14 9 22 22 H 0.97001 * 120.00560 * 179.97438 * 1 2 3 23 23 H 1.00894 * 110.99903 * 335.83157 * 11 9 7 24 24 H 1.08999 * 110.66942 * 157.64166 * 12 11 9 25 25 H 1.08999 * 110.66602 * 280.60624 * 12 11 9 26 26 H 1.09004 * 110.72116 * 80.94297 * 13 12 11 27 27 H 1.09000 * 110.72731 * 204.04973 * 13 12 11 28 28 H 1.08988 * 109.47561 * 308.33259 * 16 14 9 29 29 H 1.08998 * 109.47871 * 300.00075 * 17 16 14 30 30 H 1.08992 * 109.46922 * 60.00775 * 17 16 14 31 31 H 1.08998 * 109.46807 * 300.00694 * 18 17 16 32 32 H 1.08997 * 109.47391 * 180.02562 * 18 17 16 33 33 H 1.09002 * 109.47477 * 179.97438 * 19 18 17 34 34 H 1.09004 * 109.47160 * 60.00331 * 19 18 17 35 35 H 1.08998 * 109.47305 * 300.00263 * 20 19 18 36 36 H 1.08996 * 109.47771 * 179.97438 * 20 19 18 37 37 H 1.08997 * 109.46892 * 299.99602 * 21 16 14 38 38 H 1.09004 * 109.47501 * 59.99546 * 21 16 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6176 0.0000 4 1 3.1029 1.6963 -1.2126 5 1 3.1030 1.6963 1.2124 6 1 1.2842 2.7465 -0.0006 7 6 2.0044 -1.1941 -0.0005 8 1 3.0844 -1.1941 -0.0010 9 6 1.2509 -2.4992 -0.0005 10 1 0.6182 -2.5625 -0.8858 11 7 0.4216 -2.6021 1.2198 12 6 0.4391 -4.0375 1.6014 13 6 1.9007 -4.4632 1.3131 14 6 2.2422 -3.6774 0.0262 15 1 2.1028 -4.3091 -0.8510 16 6 3.6807 -3.1596 0.0861 17 6 4.6512 -4.3282 -0.0970 18 6 6.0898 -3.8107 -0.0365 19 6 6.3374 -3.1500 1.3211 20 6 5.3669 -1.9815 1.5043 21 6 3.9288 -2.4987 1.4435 22 1 -0.4851 -0.8400 -0.0004 23 1 0.7944 -2.0266 1.9599 24 1 0.2051 -4.1573 2.6592 25 1 -0.2585 -4.6073 0.9875 26 1 2.5571 -4.1672 2.1314 27 1 1.9626 -5.5376 1.1400 28 1 3.8374 -2.4294 -0.7077 29 1 4.4946 -5.0586 0.6968 30 1 4.4745 -4.7991 -1.0640 31 1 6.2468 -3.0802 -0.8301 32 1 6.7813 -4.6431 -0.1674 33 1 7.3624 -2.7817 1.3644 34 1 6.1804 -3.8805 2.1147 35 1 5.5239 -1.2510 0.7107 36 1 5.5430 -1.5111 2.4716 37 1 3.2374 -1.6662 1.5740 38 1 3.7721 -3.2290 2.2374 RHF calculation, no. of doubly occupied orbitals= 43 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000261241003.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:04:53 Heat of formation + Delta-G solvation = -13.151484 kcal Electronic energy + Delta-G solvation = -16769.449307 eV Core-core repulsion = 14417.765861 eV Total energy + Delta-G solvation = -2351.683446 eV No. of doubly occupied orbitals = 43 Molecular weight (most abundant/longest-lived isotopes) = 223.163 amu Computer time = 0.27 seconds Orbital eigenvalues (eV) -39.39854 -36.47492 -32.60421 -31.47264 -30.28914 -28.12516 -26.81756 -24.03286 -22.05313 -21.79182 -20.88299 -19.43193 -18.29045 -16.68848 -14.90324 -14.62917 -14.41606 -14.07366 -13.66760 -13.64255 -13.55312 -12.83889 -12.29325 -11.74155 -11.62863 -11.49534 -11.22443 -10.83896 -10.73571 -10.48932 -10.37818 -10.30154 -10.16227 -10.08139 -9.91327 -9.50545 -9.27824 -9.14822 -8.32097 -8.21729 -7.24103 -6.16013 -3.95802 3.46509 3.47484 3.65873 4.59247 5.12081 5.20382 5.24022 5.31836 5.54998 5.62733 5.64532 5.81487 5.92105 5.96891 6.01518 6.05100 6.06979 6.11531 6.18638 6.36976 6.37800 6.41282 6.49294 6.53541 6.57729 6.71326 6.79295 6.92987 6.95778 7.03529 7.27693 7.38644 7.59233 8.05043 8.23432 8.61723 8.83049 9.08276 9.81458 11.21602 Molecular weight = 223.16amu Principal moments of inertia in cm(-1) A = 0.022600 B = 0.013172 C = 0.009336 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1238.654907 B = 2125.138598 C = 2998.469185 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.900 5.900 2 C 0.029 3.971 3 Si 1.055 2.945 4 H -0.290 1.290 5 H -0.288 1.288 6 H -0.285 1.285 7 C -0.629 4.629 8 H 0.079 0.921 9 C 0.192 3.808 10 H 0.028 0.972 11 N -0.669 5.669 12 C 0.037 3.963 13 C -0.158 4.158 14 C -0.097 4.097 15 H 0.047 0.953 16 C -0.059 4.059 17 C -0.118 4.118 18 C -0.116 4.116 19 C -0.116 4.116 20 C -0.119 4.119 21 C -0.132 4.132 22 H 0.290 0.710 23 H 0.333 0.667 24 H 0.051 0.949 25 H 0.059 0.941 26 H 0.071 0.929 27 H 0.046 0.954 28 H 0.081 0.919 29 H 0.051 0.949 30 H 0.050 0.950 31 H 0.058 0.942 32 H 0.049 0.951 33 H 0.050 0.950 34 H 0.053 0.947 35 H 0.058 0.942 36 H 0.051 0.949 37 H 0.112 0.888 38 H 0.045 0.955 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.048 -6.757 2.572 11.582 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.534 5.534 2 C -0.180 4.180 3 Si 0.885 3.115 4 H -0.217 1.217 5 H -0.215 1.215 6 H -0.211 1.211 7 C -0.667 4.667 8 H 0.097 0.903 9 C 0.085 3.915 10 H 0.046 0.954 11 N -0.298 5.298 12 C -0.093 4.093 13 C -0.197 4.197 14 C -0.117 4.117 15 H 0.065 0.935 16 C -0.077 4.077 17 C -0.155 4.155 18 C -0.154 4.154 19 C -0.154 4.154 20 C -0.156 4.156 21 C -0.169 4.169 22 H 0.102 0.898 23 H 0.149 0.851 24 H 0.070 0.930 25 H 0.077 0.923 26 H 0.089 0.911 27 H 0.065 0.935 28 H 0.099 0.901 29 H 0.070 0.930 30 H 0.068 0.932 31 H 0.077 0.923 32 H 0.068 0.932 33 H 0.069 0.931 34 H 0.072 0.928 35 H 0.077 0.923 36 H 0.070 0.930 37 H 0.130 0.870 38 H 0.064 0.936 Dipole moment (debyes) X Y Z Total from point charges 8.144 -5.092 2.238 9.862 hybrid contribution 1.182 -1.980 0.273 2.322 sum 9.326 -7.071 2.510 11.970 Atomic orbital electron populations 1.70581 1.06960 1.32789 1.43110 1.25643 0.96630 1.02030 0.93657 0.83751 0.75083 0.76302 0.76413 1.21695 1.21498 1.21066 1.22633 0.95394 0.90991 1.57680 0.90327 1.19936 0.88748 0.93191 0.89652 0.95428 1.63157 1.55240 1.03099 1.08270 1.23009 0.94711 0.93099 0.98531 1.23356 0.98636 0.98488 0.99214 1.22290 0.96480 0.97507 0.95422 0.93469 1.21001 0.92698 0.95402 0.98600 1.21705 0.94710 0.98718 1.00394 1.21502 0.96913 0.99440 0.97525 1.21525 0.98484 0.98123 0.97239 1.21530 0.96188 0.97141 1.00785 1.22261 0.96184 1.02148 0.96267 0.89785 0.85053 0.93032 0.92268 0.91078 0.93472 0.90051 0.93047 0.93161 0.92290 0.93225 0.93149 0.92782 0.92324 0.93031 0.86985 0.93620 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -26.56 13.53 55.43 0.75 -25.81 16 2 C 0.03 0.80 5.40 -17.82 -0.10 0.71 16 3 Si 1.06 24.41 29.90 -169.99 -5.08 19.33 16 4 H -0.29 -6.50 7.11 56.52 0.40 -6.10 16 5 H -0.29 -6.35 7.11 56.52 0.40 -5.95 16 6 H -0.29 -6.78 7.11 56.52 0.40 -6.38 16 7 C -0.63 -16.03 5.67 -34.44 -0.20 -16.22 16 8 H 0.08 1.93 3.63 -52.49 -0.19 1.74 16 9 C 0.19 4.62 2.73 -67.79 -0.19 4.44 16 10 H 0.03 0.76 8.01 -51.93 -0.42 0.35 16 11 N -0.67 -15.42 6.11 -104.34 -0.64 -16.06 16 12 C 0.04 0.71 7.55 -1.90 -0.01 0.69 16 13 C -0.16 -2.84 5.82 -24.87 -0.14 -2.99 16 14 C -0.10 -1.95 2.78 -89.26 -0.25 -2.19 16 15 H 0.05 0.95 8.13 -51.93 -0.42 0.53 16 16 C -0.06 -1.09 1.45 -90.62 -0.13 -1.22 16 17 C -0.12 -1.86 5.09 -26.73 -0.14 -1.99 16 18 C -0.12 -1.64 5.92 -26.73 -0.16 -1.80 16 19 C -0.12 -1.62 5.92 -26.73 -0.16 -1.78 16 20 C -0.12 -1.92 5.92 -26.76 -0.16 -2.08 16 21 C -0.13 -2.42 3.82 -26.76 -0.10 -2.52 16 22 H 0.29 8.67 6.47 -40.82 -0.26 8.41 16 23 H 0.33 7.96 8.39 -39.30 -0.33 7.64 16 24 H 0.05 0.89 8.14 -51.93 -0.42 0.47 16 25 H 0.06 1.12 8.14 -51.93 -0.42 0.70 16 26 H 0.07 1.26 5.09 -51.93 -0.26 1.00 16 27 H 0.05 0.77 8.14 -51.93 -0.42 0.35 16 28 H 0.08 1.71 6.38 -51.94 -0.33 1.38 16 29 H 0.05 0.80 7.71 -51.93 -0.40 0.39 16 30 H 0.05 0.77 8.14 -51.93 -0.42 0.35 16 31 H 0.06 0.85 8.14 -51.93 -0.42 0.43 16 32 H 0.05 0.62 8.14 -51.93 -0.42 0.20 16 33 H 0.05 0.63 8.14 -51.93 -0.42 0.21 16 34 H 0.05 0.74 8.14 -51.93 -0.42 0.31 16 35 H 0.06 0.99 8.14 -51.93 -0.42 0.56 16 36 H 0.05 0.78 8.14 -51.93 -0.42 0.36 16 37 H 0.11 2.41 5.13 -51.93 -0.27 2.15 16 38 H 0.05 0.81 5.70 -51.93 -0.30 0.51 16 LS Contribution 274.99 15.07 4.14 4.14 Total: -1.00 -27.01 274.99 -8.76 -35.77 By element: Atomic # 1 Polarization: 15.80 SS G_CDS: -6.20 Total: 9.59 kcal Atomic # 6 Polarization: -25.24 SS G_CDS: -1.73 Total: -26.97 kcal Atomic # 7 Polarization: -41.98 SS G_CDS: 0.11 Total: -41.87 kcal Atomic # 14 Polarization: 24.41 SS G_CDS: -5.08 Total: 19.33 kcal Total LS contribution 4.14 Total: 4.14 kcal Total: -27.01 -8.76 -35.77 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000261241003.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 22.622 kcal (2) G-P(sol) polarization free energy of solvation -27.014 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -4.392 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.759 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.773 kcal (6) G-S(sol) free energy of system = (1) + (5) -13.151 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.27 seconds