Wall clock time and date at job start Mon Mar 30 2020 03:04:53 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31508 * 1 3 3 Si 1.86797 * 120.00427 * 2 1 4 4 H 1.48506 * 109.47171 * 240.00319 * 3 2 1 5 5 H 1.48497 * 109.47502 * 120.00116 * 3 2 1 6 6 H 1.48506 * 109.47035 * 359.97438 * 3 2 1 7 7 C 1.37878 * 119.99791 * 180.02562 * 2 1 3 8 8 H 1.08002 * 120.00045 * 179.97438 * 7 2 1 9 9 C 1.50702 * 120.00194 * 359.97438 * 7 2 1 10 10 H 1.08997 * 109.90758 * 59.77726 * 9 7 2 11 11 N 1.47904 * 109.91492 * 298.67731 * 9 7 2 12 12 C 1.48534 * 105.81961 * 215.31391 * 11 9 7 13 13 C 1.54936 * 103.22655 * 39.20594 * 12 11 9 14 14 C 1.53996 * 109.91938 * 181.08480 * 9 7 2 15 15 H 1.08997 * 110.30752 * 239.49187 * 14 9 7 16 16 C 1.52998 * 110.30542 * 1.66151 * 14 9 7 17 17 C 1.53002 * 109.46569 * 188.32958 * 16 14 9 18 18 C 1.53009 * 109.47073 * 180.02562 * 17 16 14 19 19 C 1.52998 * 109.46789 * 60.00089 * 18 17 16 20 20 C 1.52996 * 109.47708 * 300.00215 * 19 18 17 21 21 C 1.53002 * 109.47173 * 68.33732 * 16 14 9 22 22 H 0.97001 * 120.00560 * 179.97438 * 1 2 3 23 23 H 1.00894 * 110.99903 * 335.83157 * 11 9 7 24 24 H 1.08999 * 110.66942 * 157.64166 * 12 11 9 25 25 H 1.08999 * 110.66602 * 280.60624 * 12 11 9 26 26 H 1.09004 * 110.72116 * 80.94297 * 13 12 11 27 27 H 1.09000 * 110.72731 * 204.04973 * 13 12 11 28 28 H 1.08988 * 109.47561 * 308.33259 * 16 14 9 29 29 H 1.08998 * 109.47871 * 300.00075 * 17 16 14 30 30 H 1.08992 * 109.46922 * 60.00775 * 17 16 14 31 31 H 1.08998 * 109.46807 * 300.00694 * 18 17 16 32 32 H 1.08997 * 109.47391 * 180.02562 * 18 17 16 33 33 H 1.09002 * 109.47477 * 179.97438 * 19 18 17 34 34 H 1.09004 * 109.47160 * 60.00331 * 19 18 17 35 35 H 1.08998 * 109.47305 * 300.00263 * 20 19 18 36 36 H 1.08996 * 109.47771 * 179.97438 * 20 19 18 37 37 H 1.08997 * 109.46892 * 299.99602 * 21 16 14 38 38 H 1.09004 * 109.47501 * 59.99546 * 21 16 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6176 0.0000 4 1 3.1029 1.6963 -1.2126 5 1 3.1030 1.6963 1.2124 6 1 1.2842 2.7465 -0.0006 7 6 2.0044 -1.1941 -0.0005 8 1 3.0844 -1.1941 -0.0010 9 6 1.2509 -2.4992 -0.0005 10 1 0.6182 -2.5625 -0.8858 11 7 0.4216 -2.6021 1.2198 12 6 0.4391 -4.0375 1.6014 13 6 1.9007 -4.4632 1.3131 14 6 2.2422 -3.6774 0.0262 15 1 2.1028 -4.3091 -0.8510 16 6 3.6807 -3.1596 0.0861 17 6 4.6512 -4.3282 -0.0970 18 6 6.0898 -3.8107 -0.0365 19 6 6.3374 -3.1500 1.3211 20 6 5.3669 -1.9815 1.5043 21 6 3.9288 -2.4987 1.4435 22 1 -0.4851 -0.8400 -0.0004 23 1 0.7944 -2.0266 1.9599 24 1 0.2051 -4.1573 2.6592 25 1 -0.2585 -4.6073 0.9875 26 1 2.5571 -4.1672 2.1314 27 1 1.9626 -5.5376 1.1400 28 1 3.8374 -2.4294 -0.7077 29 1 4.4946 -5.0586 0.6968 30 1 4.4745 -4.7991 -1.0640 31 1 6.2468 -3.0802 -0.8301 32 1 6.7813 -4.6431 -0.1674 33 1 7.3624 -2.7817 1.3644 34 1 6.1804 -3.8805 2.1147 35 1 5.5239 -1.2510 0.7107 36 1 5.5430 -1.5111 2.4716 37 1 3.2374 -1.6662 1.5740 38 1 3.7721 -3.2290 2.2374 RHF calculation, no. of doubly occupied orbitals= 43 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000261241003.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:04:53 Heat of formation + Delta-G solvation = -28.758862 kcal Electronic energy + Delta-G solvation = -16770.126094 eV Core-core repulsion = 14417.765861 eV Total energy + Delta-G solvation = -2352.360233 eV No. of doubly occupied orbitals = 43 Molecular weight (most abundant/longest-lived isotopes) = 223.163 amu Computer time = 0.32 seconds Orbital eigenvalues (eV) -40.95757 -37.94654 -34.60424 -32.93901 -31.59456 -29.90472 -28.36885 -25.94864 -23.46027 -23.17859 -22.50663 -20.92165 -19.91906 -18.47279 -16.59172 -16.30361 -15.85105 -15.60069 -15.42825 -14.99961 -14.84166 -14.56089 -13.89752 -13.15276 -13.13063 -12.95215 -12.72997 -12.53363 -12.26094 -12.14285 -12.01921 -11.87963 -11.67145 -11.54355 -11.50308 -10.96054 -10.72592 -10.69419 -10.32093 -10.14667 -9.05559 -8.31048 -6.09463 1.56560 1.63040 1.80519 2.66379 3.34128 3.77974 3.85941 3.90699 4.07396 4.12294 4.24794 4.41575 4.50597 4.57046 4.64088 4.73902 4.75035 4.77096 4.89476 4.92229 4.96373 4.99397 5.18569 5.20500 5.28148 5.31494 5.40861 5.43283 5.48330 5.54643 5.65212 5.79084 5.90727 6.14260 6.32088 6.59712 6.81268 7.03526 7.74376 9.04326 Molecular weight = 223.16amu Principal moments of inertia in cm(-1) A = 0.022600 B = 0.013172 C = 0.009336 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1238.654907 B = 2125.138598 C = 2998.469185 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.938 5.938 2 C -0.023 4.023 3 Si 1.098 2.902 4 H -0.278 1.278 5 H -0.268 1.268 6 H -0.296 1.296 7 C -0.616 4.616 8 H 0.089 0.911 9 C 0.189 3.811 10 H -0.020 1.020 11 N -0.685 5.685 12 C 0.036 3.964 13 C -0.143 4.143 14 C -0.096 4.096 15 H 0.043 0.957 16 C -0.053 4.053 17 C -0.111 4.111 18 C -0.115 4.115 19 C -0.111 4.111 20 C -0.119 4.119 21 C -0.126 4.126 22 H 0.273 0.727 23 H 0.326 0.674 24 H 0.074 0.926 25 H 0.059 0.941 26 H 0.079 0.921 27 H 0.073 0.927 28 H 0.050 0.950 29 H 0.062 0.938 30 H 0.052 0.948 31 H 0.051 0.949 32 H 0.074 0.926 33 H 0.070 0.930 34 H 0.064 0.936 35 H 0.045 0.955 36 H 0.061 0.939 37 H 0.075 0.925 38 H 0.056 0.944 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 11.578 -8.128 3.647 14.609 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.575 5.575 2 C -0.225 4.225 3 Si 0.923 3.077 4 H -0.204 1.204 5 H -0.193 1.193 6 H -0.222 1.222 7 C -0.654 4.654 8 H 0.107 0.893 9 C 0.081 3.919 10 H -0.002 1.002 11 N -0.314 5.314 12 C -0.094 4.094 13 C -0.182 4.182 14 C -0.116 4.116 15 H 0.061 0.939 16 C -0.072 4.072 17 C -0.149 4.149 18 C -0.153 4.153 19 C -0.148 4.148 20 C -0.157 4.157 21 C -0.162 4.162 22 H 0.085 0.915 23 H 0.142 0.858 24 H 0.093 0.907 25 H 0.077 0.923 26 H 0.097 0.903 27 H 0.091 0.909 28 H 0.068 0.932 29 H 0.081 0.919 30 H 0.070 0.930 31 H 0.070 0.930 32 H 0.093 0.907 33 H 0.088 0.912 34 H 0.083 0.917 35 H 0.064 0.936 36 H 0.080 0.920 37 H 0.093 0.907 38 H 0.075 0.925 Dipole moment (debyes) X Y Z Total from point charges 10.696 -6.486 3.314 12.941 hybrid contribution 0.361 -1.621 -0.081 1.663 sum 11.058 -8.107 3.232 14.087 Atomic orbital electron populations 1.70701 1.08161 1.31754 1.46872 1.26880 0.96607 1.05605 0.93378 0.83172 0.74237 0.72650 0.77656 1.20359 1.19330 1.22211 1.22979 0.96020 0.91465 1.54959 0.89329 1.19809 0.88911 0.94631 0.88535 1.00245 1.62935 1.55222 1.05576 1.07630 1.23108 0.95813 0.90571 0.99926 1.23241 0.97473 0.99590 0.97882 1.22236 0.96552 0.96114 0.96713 0.93858 1.20869 0.92466 0.96068 0.97795 1.21623 0.94951 0.97380 1.00935 1.21509 0.96068 1.00162 0.97522 1.21494 0.98774 0.97236 0.97325 1.21525 0.95229 0.98002 1.00937 1.22070 0.96996 1.00970 0.96212 0.91544 0.85787 0.90730 0.92269 0.90298 0.90857 0.93170 0.91915 0.92965 0.92998 0.90726 0.91162 0.91744 0.93567 0.92041 0.90679 0.92534 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.94 -57.59 13.53 21.45 0.29 -57.30 16 2 C -0.02 -1.28 5.40 84.66 0.46 -0.82 16 3 Si 1.10 49.92 29.90 68.60 2.05 51.97 16 4 H -0.28 -11.95 7.11 99.48 0.71 -11.24 16 5 H -0.27 -11.20 7.11 99.48 0.71 -10.49 16 6 H -0.30 -13.92 7.11 99.48 0.71 -13.21 16 7 C -0.62 -32.21 5.67 25.60 0.15 -32.06 16 8 H 0.09 4.40 3.63 -2.91 -0.01 4.39 16 9 C 0.19 9.38 2.73 44.31 0.12 9.51 16 10 H -0.02 -1.18 8.01 -2.39 -0.02 -1.20 16 11 N -0.69 -32.26 6.11 -484.02 -2.96 -35.21 16 12 C 0.04 1.32 7.55 86.65 0.65 1.98 16 13 C -0.14 -4.82 5.82 31.80 0.19 -4.63 16 14 C -0.10 -3.81 2.78 -9.91 -0.03 -3.84 16 15 H 0.04 1.73 8.13 -2.39 -0.02 1.71 16 16 C -0.05 -1.93 1.45 -10.79 -0.02 -1.94 16 17 C -0.11 -3.18 5.09 30.60 0.16 -3.03 16 18 C -0.12 -2.84 5.92 30.60 0.18 -2.65 16 19 C -0.11 -2.66 5.92 30.59 0.18 -2.47 16 20 C -0.12 -3.55 5.92 30.58 0.18 -3.37 16 21 C -0.13 -4.40 3.82 30.58 0.12 -4.28 16 22 H 0.27 17.26 6.47 -92.71 -0.60 16.66 16 23 H 0.33 15.94 8.39 -89.70 -0.75 15.18 16 24 H 0.07 2.43 8.14 -2.39 -0.02 2.41 16 25 H 0.06 2.19 8.14 -2.39 -0.02 2.17 16 26 H 0.08 2.56 5.09 -2.39 -0.01 2.54 16 27 H 0.07 2.13 8.14 -2.39 -0.02 2.11 16 28 H 0.05 2.11 6.38 -2.39 -0.02 2.10 16 29 H 0.06 1.67 7.71 -2.39 -0.02 1.66 16 30 H 0.05 1.47 8.14 -2.39 -0.02 1.45 16 31 H 0.05 1.35 8.14 -2.39 -0.02 1.33 16 32 H 0.07 1.52 8.14 -2.39 -0.02 1.50 16 33 H 0.07 1.45 8.14 -2.39 -0.02 1.43 16 34 H 0.06 1.44 8.14 -2.38 -0.02 1.42 16 35 H 0.05 1.47 8.14 -2.39 -0.02 1.45 16 36 H 0.06 1.70 8.14 -2.39 -0.02 1.68 16 37 H 0.07 3.20 5.13 -2.39 -0.01 3.19 16 38 H 0.06 1.85 5.70 -2.38 -0.01 1.83 16 Total: -1.00 -60.27 274.99 2.17 -58.10 By element: Atomic # 1 Polarization: 29.62 SS G_CDS: 0.45 Total: 30.07 kcal Atomic # 6 Polarization: -49.96 SS G_CDS: 2.34 Total: -47.62 kcal Atomic # 7 Polarization: -89.84 SS G_CDS: -2.67 Total: -92.51 kcal Atomic # 14 Polarization: 49.92 SS G_CDS: 2.05 Total: 51.97 kcal Total: -60.27 2.17 -58.10 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000261241003.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 29.338 kcal (2) G-P(sol) polarization free energy of solvation -60.269 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -30.932 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.173 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -58.097 kcal (6) G-S(sol) free energy of system = (1) + (5) -28.759 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.32 seconds