Wall clock time and date at job start Mon Mar 30 2020 03:04:56 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31521 * 1 3 3 Si 1.86800 * 120.00092 * 2 1 4 4 H 1.48502 * 109.47001 * 180.02562 * 3 2 1 5 5 H 1.48502 * 109.47255 * 300.00145 * 3 2 1 6 6 H 1.48497 * 109.46914 * 60.00032 * 3 2 1 7 7 C 1.37875 * 119.99743 * 180.02562 * 2 1 3 8 8 H 1.08001 * 119.99589 * 179.97438 * 7 2 1 9 9 C 1.50699 * 120.00309 * 0.02562 * 7 2 1 10 10 H 1.09003 * 109.90594 * 295.41977 * 9 7 2 11 11 N 1.47900 * 109.91766 * 56.73015 * 9 7 2 12 12 C 1.48534 * 105.82183 * 144.68577 * 11 9 7 13 13 C 1.54939 * 103.22792 * 320.79480 * 12 11 9 14 14 C 1.53988 * 109.91777 * 174.32141 * 9 7 2 15 15 H 1.08999 * 110.31060 * 120.50537 * 14 9 7 16 16 C 1.52998 * 110.31149 * 358.43460 * 14 9 7 17 17 C 1.53004 * 109.47211 * 292.95555 * 16 14 9 18 18 C 1.52993 * 109.47303 * 179.97438 * 17 16 14 19 19 C 1.53001 * 109.47074 * 60.00208 * 18 17 16 20 20 C 1.53004 * 109.47258 * 300.00012 * 19 18 17 21 21 C 1.52998 * 109.46996 * 59.99672 * 20 19 18 22 22 H 0.97001 * 119.99629 * 359.97438 * 1 2 3 23 23 H 1.00902 * 111.00485 * 24.16857 * 11 9 7 24 24 H 1.09004 * 110.66549 * 79.22299 * 12 11 9 25 25 H 1.08993 * 110.67019 * 202.18775 * 12 11 9 26 26 H 1.09002 * 110.72224 * 279.05967 * 13 12 11 27 27 H 1.08993 * 110.72829 * 155.76846 * 13 12 11 28 28 H 1.09001 * 109.47326 * 52.95593 * 16 14 9 29 29 H 1.09001 * 109.47007 * 300.00234 * 17 16 14 30 30 H 1.09005 * 109.46667 * 60.00015 * 17 16 14 31 31 H 1.09004 * 109.47249 * 300.00666 * 18 17 16 32 32 H 1.08998 * 109.47227 * 179.97438 * 18 17 16 33 33 H 1.08999 * 109.47485 * 180.02562 * 19 18 17 34 34 H 1.09001 * 109.46917 * 59.99637 * 19 18 17 35 35 H 1.09005 * 109.46748 * 300.00170 * 20 19 18 36 36 H 1.08996 * 109.47185 * 179.97438 * 20 19 18 37 37 H 1.08998 * 109.47136 * 180.02562 * 21 20 19 38 38 H 1.09001 * 109.47326 * 60.00286 * 21 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 3.7092 1.3463 -0.0006 5 1 1.8905 2.3965 -1.2125 6 1 1.8905 2.3964 1.2125 7 6 2.0045 -1.1941 -0.0005 8 1 3.0845 -1.1940 -0.0010 9 6 1.2510 -2.4992 -0.0017 10 1 0.6841 -2.6012 0.9237 11 7 0.3389 -2.5533 -1.1647 12 6 0.3280 -3.9719 -1.6050 13 6 1.8055 -4.4069 -1.4364 14 6 2.2365 -3.6737 -0.1454 15 1 2.1574 -4.3410 0.7129 16 6 3.6683 -3.1521 -0.2812 17 6 3.8157 -2.4064 -1.6091 18 6 5.2473 -1.8842 -1.7447 19 6 6.2248 -3.0607 -1.7093 20 6 6.0776 -3.8064 -0.3815 21 6 4.6458 -4.3286 -0.2458 22 1 -0.4850 0.8401 0.0004 23 1 0.6602 -1.9474 -1.9048 24 1 -0.3238 -4.5679 -0.9662 25 1 0.0181 -4.0488 -2.6472 26 1 2.4040 -4.0767 -2.2855 27 1 1.8775 -5.4869 -1.3090 28 1 3.8875 -2.4732 0.5429 29 1 3.5965 -3.0853 -2.4333 30 1 3.1196 -1.5679 -1.6341 31 1 5.4661 -1.2053 -0.9204 32 1 5.3524 -1.3534 -2.6909 33 1 7.2448 -2.6887 -1.8055 34 1 6.0061 -3.7397 -2.5335 35 1 6.2962 -3.1274 0.4427 36 1 6.7736 -4.6449 -0.3565 37 1 4.5408 -4.8594 0.7003 38 1 4.4271 -5.0076 -1.0700 RHF calculation, no. of doubly occupied orbitals= 43 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000261241004.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:04:56 Heat of formation + Delta-G solvation = -7.955662 kcal Electronic energy + Delta-G solvation = -16749.400956 eV Core-core repulsion = 14397.942817 eV Total energy + Delta-G solvation = -2351.458139 eV No. of doubly occupied orbitals = 43 Molecular weight (most abundant/longest-lived isotopes) = 223.163 amu Computer time = 0.28 seconds Orbital eigenvalues (eV) -39.28670 -36.31900 -32.47718 -31.35449 -30.25172 -28.34020 -26.72767 -24.30555 -22.01467 -21.69916 -20.80103 -19.24987 -18.02187 -16.52691 -14.90505 -14.51879 -14.33854 -14.02293 -13.69525 -13.60150 -13.39779 -12.70796 -11.98278 -11.84025 -11.62281 -11.53707 -11.21018 -10.92107 -10.86666 -10.61271 -10.38108 -10.24042 -10.13344 -9.99801 -9.64713 -9.47686 -9.18446 -9.05666 -8.63139 -8.33022 -6.86516 -5.89175 -3.97431 3.30932 3.40705 3.42616 4.46826 5.16474 5.24364 5.28259 5.32718 5.61563 5.69292 5.72952 5.88198 5.99396 6.03202 6.05413 6.10204 6.14329 6.23393 6.29919 6.41086 6.48591 6.52019 6.55696 6.62376 6.66622 6.78740 6.87504 7.00886 7.07185 7.13391 7.32330 7.48017 7.82848 7.97940 8.23968 8.49613 9.11226 9.12611 9.65956 11.14928 Molecular weight = 223.16amu Principal moments of inertia in cm(-1) A = 0.022741 B = 0.013206 C = 0.009345 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1230.987184 B = 2119.782204 C = 2995.619154 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.854 5.854 2 C 0.073 3.927 3 Si 0.874 3.126 4 H -0.272 1.272 5 H -0.286 1.286 6 H -0.286 1.286 7 C -0.549 4.549 8 H 0.085 0.915 9 C 0.209 3.791 10 H 0.034 0.966 11 N -0.643 5.643 12 C 0.033 3.967 13 C -0.158 4.158 14 C -0.105 4.105 15 H 0.047 0.953 16 C -0.059 4.059 17 C -0.134 4.134 18 C -0.119 4.119 19 C -0.116 4.116 20 C -0.116 4.116 21 C -0.117 4.117 22 H 0.255 0.745 23 H 0.330 0.670 24 H 0.057 0.943 25 H 0.048 0.952 26 H 0.068 0.932 27 H 0.044 0.956 28 H 0.078 0.922 29 H 0.046 0.954 30 H 0.115 0.885 31 H 0.057 0.943 32 H 0.050 0.950 33 H 0.049 0.951 34 H 0.054 0.946 35 H 0.058 0.942 36 H 0.049 0.951 37 H 0.050 0.950 38 H 0.052 0.948 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.307 -6.267 -3.102 10.858 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.489 5.489 2 C -0.133 4.133 3 Si 0.702 3.298 4 H -0.197 1.197 5 H -0.212 1.212 6 H -0.212 1.212 7 C -0.587 4.587 8 H 0.102 0.898 9 C 0.101 3.899 10 H 0.051 0.949 11 N -0.270 5.270 12 C -0.097 4.097 13 C -0.197 4.197 14 C -0.125 4.125 15 H 0.066 0.934 16 C -0.078 4.078 17 C -0.171 4.171 18 C -0.157 4.157 19 C -0.154 4.154 20 C -0.154 4.154 21 C -0.155 4.155 22 H 0.065 0.935 23 H 0.146 0.854 24 H 0.075 0.925 25 H 0.067 0.933 26 H 0.087 0.913 27 H 0.063 0.937 28 H 0.097 0.903 29 H 0.065 0.935 30 H 0.133 0.867 31 H 0.076 0.924 32 H 0.069 0.931 33 H 0.067 0.933 34 H 0.073 0.927 35 H 0.076 0.924 36 H 0.067 0.933 37 H 0.069 0.931 38 H 0.070 0.930 Dipole moment (debyes) X Y Z Total from point charges 7.471 -6.141 -2.722 10.046 hybrid contribution 1.381 0.712 -0.360 1.595 sum 8.852 -5.429 -3.082 10.831 Atomic orbital electron populations 1.70153 1.05569 1.25632 1.47586 1.25098 0.94631 0.98666 0.94875 0.86833 0.80498 0.84967 0.77519 1.19655 1.21189 1.21243 1.21878 0.94119 0.90094 1.52659 0.89758 1.19786 0.87369 0.91523 0.91176 0.94852 1.62996 1.53152 1.01523 1.09348 1.23088 0.94283 0.94129 0.98233 1.23359 0.98764 0.98441 0.99130 1.22453 0.96373 0.98272 0.95416 0.93447 1.20990 0.93136 0.94969 0.98668 1.22311 0.96255 1.02219 0.96268 1.21546 0.96382 0.96955 1.00793 1.21530 0.98521 0.97880 0.97452 1.21507 0.97114 0.99087 0.97690 1.21700 0.94640 0.98689 1.00463 0.93468 0.85353 0.92453 0.93292 0.91320 0.93684 0.90343 0.93542 0.86742 0.92430 0.93129 0.93264 0.92743 0.92356 0.93271 0.93147 0.92965 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.85 -24.20 12.64 55.43 0.70 -23.50 16 2 C 0.07 1.94 5.31 -17.82 -0.09 1.84 16 3 Si 0.87 20.51 29.54 -169.99 -5.02 15.49 16 4 H -0.27 -6.24 7.11 56.52 0.40 -5.84 16 5 H -0.29 -6.75 7.11 56.52 0.40 -6.35 16 6 H -0.29 -6.84 7.11 56.52 0.40 -6.44 16 7 C -0.55 -13.85 5.55 -34.44 -0.19 -14.04 16 8 H 0.08 2.05 3.76 -52.49 -0.20 1.85 16 9 C 0.21 5.07 3.22 -67.80 -0.22 4.85 16 10 H 0.03 0.93 8.14 -51.93 -0.42 0.51 16 11 N -0.64 -15.19 6.55 -104.34 -0.68 -15.87 16 12 C 0.03 0.65 7.55 -1.90 -0.01 0.64 16 13 C -0.16 -2.86 5.77 -24.87 -0.14 -3.01 16 14 C -0.10 -2.10 2.78 -89.26 -0.25 -2.35 16 15 H 0.05 0.95 8.14 -51.93 -0.42 0.52 16 16 C -0.06 -1.10 1.45 -90.62 -0.13 -1.23 16 17 C -0.13 -2.45 3.87 -26.73 -0.10 -2.56 16 18 C -0.12 -1.94 5.92 -26.73 -0.16 -2.10 16 19 C -0.12 -1.64 5.92 -26.73 -0.16 -1.80 16 20 C -0.12 -1.65 5.92 -26.73 -0.16 -1.81 16 21 C -0.12 -1.84 5.09 -26.73 -0.14 -1.98 16 22 H 0.26 6.98 8.31 -40.82 -0.34 6.64 16 23 H 0.33 8.05 8.33 -39.29 -0.33 7.72 16 24 H 0.06 1.12 8.14 -51.93 -0.42 0.69 16 25 H 0.05 0.87 8.14 -51.93 -0.42 0.45 16 26 H 0.07 1.23 5.17 -51.93 -0.27 0.96 16 27 H 0.04 0.74 8.14 -51.93 -0.42 0.32 16 28 H 0.08 1.62 6.41 -51.93 -0.33 1.29 16 29 H 0.05 0.82 5.72 -51.93 -0.30 0.53 16 30 H 0.11 2.45 5.01 -51.93 -0.26 2.19 16 31 H 0.06 0.99 8.14 -51.93 -0.42 0.57 16 32 H 0.05 0.78 8.14 -51.93 -0.42 0.35 16 33 H 0.05 0.63 8.14 -51.93 -0.42 0.20 16 34 H 0.05 0.75 8.14 -51.93 -0.42 0.32 16 35 H 0.06 0.84 8.14 -51.93 -0.42 0.42 16 36 H 0.05 0.62 8.14 -51.93 -0.42 0.19 16 37 H 0.05 0.77 8.14 -51.93 -0.42 0.35 16 38 H 0.05 0.81 7.66 -51.93 -0.40 0.41 16 LS Contribution 276.47 15.07 4.17 4.17 Total: -1.00 -26.51 276.47 -8.88 -35.39 By element: Atomic # 1 Polarization: 14.15 SS G_CDS: -6.29 Total: 7.86 kcal Atomic # 6 Polarization: -21.78 SS G_CDS: -1.76 Total: -23.54 kcal Atomic # 7 Polarization: -39.38 SS G_CDS: 0.02 Total: -39.37 kcal Atomic # 14 Polarization: 20.51 SS G_CDS: -5.02 Total: 15.49 kcal Total LS contribution 4.17 Total: 4.17 kcal Total: -26.51 -8.88 -35.39 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000261241004.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 27.435 kcal (2) G-P(sol) polarization free energy of solvation -26.509 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 0.927 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.882 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.391 kcal (6) G-S(sol) free energy of system = (1) + (5) -7.956 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.28 seconds