Wall clock time and date at job start Mon Mar 30 2020 03:04:55 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31521 * 1 3 3 Si 1.86800 * 120.00092 * 2 1 4 4 H 1.48502 * 109.47001 * 180.02562 * 3 2 1 5 5 H 1.48502 * 109.47255 * 300.00145 * 3 2 1 6 6 H 1.48497 * 109.46914 * 60.00032 * 3 2 1 7 7 C 1.37875 * 119.99743 * 180.02562 * 2 1 3 8 8 H 1.08001 * 119.99589 * 179.97438 * 7 2 1 9 9 C 1.50699 * 120.00309 * 0.02562 * 7 2 1 10 10 H 1.09003 * 109.90594 * 295.41977 * 9 7 2 11 11 N 1.47900 * 109.91766 * 56.73015 * 9 7 2 12 12 C 1.48534 * 105.82183 * 144.68577 * 11 9 7 13 13 C 1.54939 * 103.22792 * 320.79480 * 12 11 9 14 14 C 1.53988 * 109.91777 * 174.32141 * 9 7 2 15 15 H 1.08999 * 110.31060 * 120.50537 * 14 9 7 16 16 C 1.52998 * 110.31149 * 358.43460 * 14 9 7 17 17 C 1.53004 * 109.47211 * 292.95555 * 16 14 9 18 18 C 1.52993 * 109.47303 * 179.97438 * 17 16 14 19 19 C 1.53001 * 109.47074 * 60.00208 * 18 17 16 20 20 C 1.53004 * 109.47258 * 300.00012 * 19 18 17 21 21 C 1.52998 * 109.46996 * 59.99672 * 20 19 18 22 22 H 0.97001 * 119.99629 * 359.97438 * 1 2 3 23 23 H 1.00902 * 111.00485 * 24.16857 * 11 9 7 24 24 H 1.09004 * 110.66549 * 79.22299 * 12 11 9 25 25 H 1.08993 * 110.67019 * 202.18775 * 12 11 9 26 26 H 1.09002 * 110.72224 * 279.05967 * 13 12 11 27 27 H 1.08993 * 110.72829 * 155.76846 * 13 12 11 28 28 H 1.09001 * 109.47326 * 52.95593 * 16 14 9 29 29 H 1.09001 * 109.47007 * 300.00234 * 17 16 14 30 30 H 1.09005 * 109.46667 * 60.00015 * 17 16 14 31 31 H 1.09004 * 109.47249 * 300.00666 * 18 17 16 32 32 H 1.08998 * 109.47227 * 179.97438 * 18 17 16 33 33 H 1.08999 * 109.47485 * 180.02562 * 19 18 17 34 34 H 1.09001 * 109.46917 * 59.99637 * 19 18 17 35 35 H 1.09005 * 109.46748 * 300.00170 * 20 19 18 36 36 H 1.08996 * 109.47185 * 179.97438 * 20 19 18 37 37 H 1.08998 * 109.47136 * 180.02562 * 21 20 19 38 38 H 1.09001 * 109.47326 * 60.00286 * 21 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 3.7092 1.3463 -0.0006 5 1 1.8905 2.3965 -1.2125 6 1 1.8905 2.3964 1.2125 7 6 2.0045 -1.1941 -0.0005 8 1 3.0845 -1.1940 -0.0010 9 6 1.2510 -2.4992 -0.0017 10 1 0.6841 -2.6012 0.9237 11 7 0.3389 -2.5533 -1.1647 12 6 0.3280 -3.9719 -1.6050 13 6 1.8055 -4.4069 -1.4364 14 6 2.2365 -3.6737 -0.1454 15 1 2.1574 -4.3410 0.7129 16 6 3.6683 -3.1521 -0.2812 17 6 3.8157 -2.4064 -1.6091 18 6 5.2473 -1.8842 -1.7447 19 6 6.2248 -3.0607 -1.7093 20 6 6.0776 -3.8064 -0.3815 21 6 4.6458 -4.3286 -0.2458 22 1 -0.4850 0.8401 0.0004 23 1 0.6602 -1.9474 -1.9048 24 1 -0.3238 -4.5679 -0.9662 25 1 0.0181 -4.0488 -2.6472 26 1 2.4040 -4.0767 -2.2855 27 1 1.8775 -5.4869 -1.3090 28 1 3.8875 -2.4732 0.5429 29 1 3.5965 -3.0853 -2.4333 30 1 3.1196 -1.5679 -1.6341 31 1 5.4661 -1.2053 -0.9204 32 1 5.3524 -1.3534 -2.6909 33 1 7.2448 -2.6887 -1.8055 34 1 6.0061 -3.7397 -2.5335 35 1 6.2962 -3.1274 0.4427 36 1 6.7736 -4.6449 -0.3565 37 1 4.5408 -4.8594 0.7003 38 1 4.4271 -5.0076 -1.0700 RHF calculation, no. of doubly occupied orbitals= 43 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000261241004.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:04:55 Heat of formation + Delta-G solvation = -23.186072 kcal Electronic energy + Delta-G solvation = -16750.061396 eV Core-core repulsion = 14397.942817 eV Total energy + Delta-G solvation = -2352.118579 eV No. of doubly occupied orbitals = 43 Molecular weight (most abundant/longest-lived isotopes) = 223.163 amu Computer time = 0.32 seconds Orbital eigenvalues (eV) -40.82971 -37.79519 -34.45829 -32.82527 -31.57272 -30.12623 -28.27779 -26.17919 -23.37773 -23.10866 -22.41239 -20.72081 -19.65055 -18.31923 -16.74427 -16.11740 -15.78155 -15.67290 -15.16288 -14.94555 -14.79322 -14.43934 -13.79951 -13.43593 -13.04980 -12.86045 -12.80101 -12.66374 -12.41627 -12.14416 -12.05254 -11.70515 -11.56228 -11.48907 -11.30398 -10.95672 -10.75471 -10.64498 -10.44755 -10.24569 -8.68625 -7.94455 -6.04938 1.41175 1.45840 1.54176 2.49206 3.29069 3.88205 3.95817 3.98437 4.14130 4.20759 4.33231 4.53967 4.57961 4.64967 4.72273 4.80317 4.81630 4.84059 4.95159 4.99522 5.05491 5.11373 5.23657 5.27189 5.34015 5.40505 5.46587 5.51503 5.56761 5.61992 5.77272 5.85362 5.93033 6.03955 6.30485 6.61020 7.13234 7.23017 7.60511 9.10653 Molecular weight = 223.16amu Principal moments of inertia in cm(-1) A = 0.022741 B = 0.013206 C = 0.009345 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1230.987184 B = 2119.782204 C = 2995.619154 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.894 5.894 2 C 0.023 3.977 3 Si 0.933 3.067 4 H -0.262 1.262 5 H -0.286 1.286 6 H -0.292 1.292 7 C -0.539 4.539 8 H 0.093 0.907 9 C 0.206 3.794 10 H -0.016 1.016 11 N -0.664 5.664 12 C 0.032 3.968 13 C -0.143 4.143 14 C -0.102 4.102 15 H 0.045 0.955 16 C -0.054 4.054 17 C -0.128 4.128 18 C -0.119 4.119 19 C -0.111 4.111 20 C -0.115 4.115 21 C -0.111 4.111 22 H 0.251 0.749 23 H 0.324 0.676 24 H 0.055 0.945 25 H 0.070 0.930 26 H 0.077 0.923 27 H 0.070 0.930 28 H 0.050 0.950 29 H 0.056 0.944 30 H 0.079 0.921 31 H 0.042 0.958 32 H 0.059 0.941 33 H 0.067 0.933 34 H 0.064 0.936 35 H 0.051 0.949 36 H 0.074 0.926 37 H 0.053 0.947 38 H 0.062 0.938 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 10.568 -7.599 -4.262 13.697 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.532 5.532 2 C -0.179 4.179 3 Si 0.760 3.240 4 H -0.186 1.186 5 H -0.212 1.212 6 H -0.219 1.219 7 C -0.578 4.578 8 H 0.111 0.889 9 C 0.098 3.902 10 H 0.001 0.999 11 N -0.291 5.291 12 C -0.098 4.098 13 C -0.181 4.181 14 C -0.122 4.122 15 H 0.063 0.937 16 C -0.073 4.073 17 C -0.165 4.165 18 C -0.157 4.157 19 C -0.149 4.149 20 C -0.153 4.153 21 C -0.149 4.149 22 H 0.060 0.940 23 H 0.139 0.861 24 H 0.074 0.926 25 H 0.089 0.911 26 H 0.095 0.905 27 H 0.089 0.911 28 H 0.068 0.932 29 H 0.075 0.925 30 H 0.097 0.903 31 H 0.061 0.939 32 H 0.078 0.922 33 H 0.086 0.914 34 H 0.083 0.917 35 H 0.070 0.930 36 H 0.092 0.908 37 H 0.072 0.928 38 H 0.081 0.919 Dipole moment (debyes) X Y Z Total from point charges 9.753 -7.484 -3.881 12.892 hybrid contribution 0.636 1.079 0.023 1.252 sum 10.389 -6.405 -3.858 12.800 Atomic orbital electron populations 1.70299 1.07049 1.25920 1.49962 1.25756 0.95210 1.01692 0.95201 0.85893 0.79794 0.81358 0.76943 1.18585 1.21209 1.21857 1.22207 0.94596 0.90541 1.50421 0.88937 1.19641 0.87805 0.93135 0.89620 0.99858 1.62784 1.53377 1.03932 1.09045 1.23158 0.95588 0.91683 0.99363 1.23233 0.97290 0.99647 0.97970 1.22360 0.96477 0.96738 0.96657 0.93677 1.20867 0.92834 0.95820 0.97754 1.22122 0.96956 1.01020 0.96384 1.21534 0.95586 0.97890 1.00687 1.21499 0.98738 0.96920 0.97704 1.21511 0.96372 0.99839 0.97551 1.21619 0.94782 0.97311 1.01139 0.93975 0.86073 0.92619 0.91142 0.90512 0.91093 0.93156 0.92518 0.90308 0.93891 0.92242 0.91388 0.91683 0.93043 0.90773 0.92790 0.91890 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -52.52 12.64 21.45 0.27 -52.25 16 2 C 0.02 1.25 5.31 84.65 0.45 1.70 16 3 Si 0.93 43.10 29.54 68.60 2.03 45.12 16 4 H -0.26 -11.51 7.11 99.48 0.71 -10.81 16 5 H -0.29 -13.13 7.11 99.48 0.71 -12.42 16 6 H -0.29 -13.67 7.11 99.48 0.71 -12.97 16 7 C -0.54 -27.87 5.55 25.60 0.14 -27.73 16 8 H 0.09 4.56 3.76 -2.91 -0.01 4.55 16 9 C 0.21 10.27 3.22 44.31 0.14 10.41 16 10 H -0.02 -0.96 8.14 -2.39 -0.02 -0.98 16 11 N -0.66 -31.95 6.55 -484.03 -3.17 -35.12 16 12 C 0.03 1.22 7.55 86.65 0.65 1.88 16 13 C -0.14 -4.84 5.77 31.80 0.18 -4.65 16 14 C -0.10 -4.03 2.78 -9.91 -0.03 -4.06 16 15 H 0.04 1.78 8.14 -2.39 -0.02 1.76 16 16 C -0.05 -1.94 1.45 -10.79 -0.02 -1.96 16 17 C -0.13 -4.50 3.87 30.59 0.12 -4.38 16 18 C -0.12 -3.62 5.92 30.59 0.18 -3.44 16 19 C -0.11 -2.71 5.92 30.60 0.18 -2.53 16 20 C -0.12 -2.85 5.92 30.60 0.18 -2.67 16 21 C -0.11 -3.15 5.09 30.59 0.16 -2.99 16 22 H 0.25 14.25 8.31 -92.71 -0.77 13.48 16 23 H 0.32 16.09 8.33 -89.69 -0.75 15.34 16 24 H 0.06 2.12 8.14 -2.38 -0.02 2.10 16 25 H 0.07 2.37 8.14 -2.39 -0.02 2.35 16 26 H 0.08 2.50 5.17 -2.39 -0.01 2.49 16 27 H 0.07 2.08 8.14 -2.39 -0.02 2.06 16 28 H 0.05 2.07 6.41 -2.39 -0.02 2.06 16 29 H 0.06 1.86 5.72 -2.39 -0.01 1.85 16 30 H 0.08 3.36 5.01 -2.38 -0.01 3.35 16 31 H 0.04 1.41 8.14 -2.38 -0.02 1.39 16 32 H 0.06 1.68 8.14 -2.39 -0.02 1.66 16 33 H 0.07 1.44 8.14 -2.39 -0.02 1.42 16 34 H 0.06 1.48 8.14 -2.39 -0.02 1.46 16 35 H 0.05 1.34 8.14 -2.38 -0.02 1.33 16 36 H 0.07 1.51 8.14 -2.39 -0.02 1.49 16 37 H 0.05 1.49 8.14 -2.39 -0.02 1.48 16 38 H 0.06 1.68 7.66 -2.39 -0.02 1.66 16 Total: -1.00 -58.33 276.47 1.76 -56.57 By element: Atomic # 1 Polarization: 25.80 SS G_CDS: 0.29 Total: 26.09 kcal Atomic # 6 Polarization: -42.76 SS G_CDS: 2.35 Total: -40.41 kcal Atomic # 7 Polarization: -84.47 SS G_CDS: -2.90 Total: -87.37 kcal Atomic # 14 Polarization: 43.10 SS G_CDS: 2.03 Total: 45.12 kcal Total: -58.33 1.76 -56.57 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000261241004.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 33.382 kcal (2) G-P(sol) polarization free energy of solvation -58.328 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -24.946 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.760 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -56.568 kcal (6) G-S(sol) free energy of system = (1) + (5) -23.186 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.32 seconds