Wall clock time and date at job start Mon Mar 30 2020 03:05:00 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31516 * 1 3 3 Si 1.86803 * 119.99827 * 2 1 4 4 H 1.48495 * 109.47283 * 179.97438 * 3 2 1 5 5 H 1.48498 * 109.47081 * 300.00379 * 3 2 1 6 6 H 1.48508 * 109.46924 * 59.99736 * 3 2 1 7 7 C 1.37871 * 120.00242 * 180.02562 * 2 1 3 8 8 H 1.08008 * 119.99824 * 180.02562 * 7 2 1 9 9 C 1.50698 * 120.00313 * 359.97438 * 7 2 1 10 10 H 1.09000 * 110.45890 * 302.42053 * 9 7 2 11 11 N 1.48561 * 110.40734 * 64.82940 * 9 7 2 12 12 C 1.48559 * 104.22103 * 158.26282 * 11 9 7 13 13 C 1.54376 * 104.59510 * 320.51821 * 12 11 9 14 14 C 1.54261 * 105.06236 * 23.85370 * 13 12 11 15 15 H 1.08996 * 110.32238 * 241.00603 * 14 13 12 16 16 C 1.53002 * 110.32743 * 118.89651 * 14 13 12 17 17 C 1.52997 * 109.47143 * 181.45368 * 16 14 13 18 18 C 1.52999 * 109.46991 * 179.97438 * 17 16 14 19 19 C 1.53006 * 109.46626 * 60.00378 * 18 17 16 20 20 C 1.52997 * 109.47127 * 299.99539 * 19 18 17 21 21 C 1.52996 * 109.46969 * 61.45438 * 16 14 13 22 22 H 0.96998 * 119.99941 * 0.02562 * 1 2 3 23 23 H 1.00900 * 110.99794 * 38.70832 * 11 9 7 24 24 H 1.09000 * 110.41111 * 201.73751 * 12 11 9 25 25 H 1.09001 * 110.50974 * 79.34466 * 12 11 9 26 26 H 1.09000 * 110.32682 * 264.95629 * 13 12 11 27 27 H 1.09008 * 110.41207 * 142.79165 * 13 12 11 28 28 H 1.09000 * 109.46497 * 301.45598 * 16 14 13 29 29 H 1.09002 * 109.47153 * 60.00035 * 17 16 14 30 30 H 1.08993 * 109.47194 * 300.00323 * 17 16 14 31 31 H 1.08993 * 109.47839 * 300.00447 * 18 17 16 32 32 H 1.09000 * 109.47160 * 180.02562 * 18 17 16 33 33 H 1.09001 * 109.46801 * 59.99811 * 19 18 17 34 34 H 1.09001 * 109.46998 * 179.97438 * 19 18 17 35 35 H 1.09002 * 109.47153 * 180.02562 * 20 19 18 36 36 H 1.08996 * 109.46952 * 300.00302 * 20 19 18 37 37 H 1.08996 * 109.47452 * 59.99938 * 21 16 14 38 38 H 1.09000 * 109.47054 * 300.00097 * 21 16 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 3.7091 1.3465 0.0006 5 1 1.8903 2.3965 -1.2124 6 1 1.8903 2.3965 1.2125 7 6 2.0046 -1.1940 -0.0005 8 1 3.0847 -1.1939 -0.0001 9 6 1.2512 -2.4991 -0.0005 10 1 0.5869 -2.5556 0.8618 11 7 0.4789 -2.6514 -1.2604 12 6 0.2523 -4.1152 -1.3749 13 6 1.5779 -4.7519 -0.9053 14 6 2.2351 -3.6888 -0.0011 15 1 3.1980 -3.3854 -0.4118 16 6 2.4113 -4.2333 1.4179 17 6 3.0305 -3.1521 2.3058 18 6 3.2062 -3.6965 3.7248 19 6 4.1265 -4.9183 3.6920 20 6 3.5073 -5.9995 2.8040 21 6 3.3319 -5.4549 1.3846 22 1 -0.4850 0.8400 -0.0004 23 1 1.0024 -2.3038 -2.0498 24 1 0.0451 -4.3880 -2.4097 25 1 -0.5687 -4.4263 -0.7289 26 1 2.2176 -4.9691 -1.7607 27 1 1.3826 -5.6624 -0.3386 28 1 1.4398 -4.5212 1.8197 29 1 2.3747 -2.2818 2.3295 30 1 4.0018 -2.8642 1.9038 31 1 2.2347 -3.9842 4.1266 32 1 3.6469 -2.9261 4.3576 33 1 5.0981 -4.6306 3.2902 34 1 4.2521 -5.3059 4.7030 35 1 4.1628 -6.8702 2.7810 36 1 2.5357 -6.2871 3.2058 37 1 4.3032 -5.1671 0.9826 38 1 2.8907 -6.2252 0.7520 RHF calculation, no. of doubly occupied orbitals= 43 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000261241006.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:05:00 Heat of formation + Delta-G solvation = -33.728654 kcal Electronic energy + Delta-G solvation = -16314.322011 eV Core-core repulsion = 13961.746272 eV Total energy + Delta-G solvation = -2352.575739 eV No. of doubly occupied orbitals = 43 Molecular weight (most abundant/longest-lived isotopes) = 223.163 amu Computer time = 0.26 seconds Orbital eigenvalues (eV) -38.93141 -36.56588 -32.47241 -31.40089 -30.37925 -28.26074 -26.93132 -24.19636 -22.24649 -21.60180 -20.23581 -19.30704 -18.66937 -16.68053 -15.24319 -14.60741 -14.18438 -13.92266 -13.65145 -13.59367 -12.93914 -12.70067 -12.46906 -12.02255 -11.78312 -11.67759 -11.16220 -10.93638 -10.77223 -10.71954 -10.67754 -10.46891 -10.14246 -10.08046 -9.75902 -9.55714 -9.39815 -9.11955 -8.82045 -8.41195 -7.01541 -5.89189 -4.00623 3.32560 3.41547 3.44299 4.48339 5.05659 5.14973 5.16572 5.30924 5.59344 5.59681 5.68972 5.75775 5.85026 5.91751 5.97109 5.98885 6.05794 6.13815 6.30846 6.32572 6.40345 6.46183 6.46753 6.54508 6.57362 6.69723 6.78285 6.88927 6.95170 7.00182 7.20109 7.26748 7.75532 7.93785 8.21717 8.47082 9.01356 9.09648 9.67145 11.16371 Molecular weight = 223.16amu Principal moments of inertia in cm(-1) A = 0.024986 B = 0.010191 C = 0.007816 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1120.368729 B = 2746.973587 C = 3581.536215 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.855 5.855 2 C 0.078 3.922 3 Si 0.879 3.121 4 H -0.274 1.274 5 H -0.285 1.285 6 H -0.285 1.285 7 C -0.531 4.531 8 H 0.055 0.945 9 C 0.216 3.784 10 H 0.045 0.955 11 N -0.644 5.644 12 C 0.033 3.967 13 C -0.154 4.154 14 C -0.112 4.112 15 H 0.059 0.941 16 C -0.064 4.064 17 C -0.110 4.110 18 C -0.120 4.120 19 C -0.117 4.117 20 C -0.117 4.117 21 C -0.115 4.115 22 H 0.256 0.744 23 H 0.321 0.679 24 H 0.048 0.952 25 H 0.060 0.940 26 H 0.047 0.953 27 H 0.054 0.946 28 H 0.059 0.941 29 H 0.086 0.914 30 H 0.053 0.947 31 H 0.056 0.944 32 H 0.054 0.946 33 H 0.057 0.943 34 H 0.051 0.949 35 H 0.051 0.949 36 H 0.057 0.943 37 H 0.055 0.945 38 H 0.055 0.945 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.463 -9.393 3.555 11.433 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.490 5.490 2 C -0.128 4.128 3 Si 0.707 3.293 4 H -0.199 1.199 5 H -0.211 1.211 6 H -0.211 1.211 7 C -0.570 4.570 8 H 0.073 0.927 9 C 0.108 3.892 10 H 0.063 0.937 11 N -0.270 5.270 12 C -0.098 4.098 13 C -0.194 4.194 14 C -0.133 4.133 15 H 0.078 0.922 16 C -0.083 4.083 17 C -0.148 4.148 18 C -0.158 4.158 19 C -0.155 4.155 20 C -0.155 4.155 21 C -0.153 4.153 22 H 0.066 0.934 23 H 0.136 0.864 24 H 0.066 0.934 25 H 0.078 0.922 26 H 0.065 0.935 27 H 0.073 0.927 28 H 0.077 0.923 29 H 0.105 0.895 30 H 0.072 0.928 31 H 0.075 0.925 32 H 0.073 0.927 33 H 0.076 0.924 34 H 0.070 0.930 35 H 0.070 0.930 36 H 0.076 0.924 37 H 0.074 0.926 38 H 0.074 0.926 Dipole moment (debyes) X Y Z Total from point charges 4.589 -9.057 3.802 10.842 hybrid contribution 1.423 0.491 -0.288 1.532 sum 6.012 -8.565 3.515 11.039 Atomic orbital electron populations 1.70102 1.05649 1.25750 1.47517 1.25016 0.94633 0.98669 0.94502 0.86760 0.80312 0.84684 0.77508 1.19899 1.21141 1.21143 1.21104 0.92394 0.90198 1.53266 0.92676 1.20099 0.88618 0.90712 0.89725 0.93700 1.63685 1.49098 1.08203 1.06050 1.22988 0.95896 0.92279 0.98645 1.23032 0.98625 0.98841 0.98874 1.22719 1.00603 0.96777 0.93179 0.92204 1.21017 0.97616 0.93904 0.95760 1.21568 1.01446 0.99019 0.92739 1.21584 0.99089 0.96731 0.98399 1.21530 0.99090 0.96207 0.98666 1.21529 1.00318 0.97384 0.96246 1.21682 0.99955 0.97982 0.95653 0.93392 0.86356 0.93385 0.92194 0.93464 0.92693 0.92267 0.89512 0.92772 0.92543 0.92696 0.92443 0.93034 0.93010 0.92424 0.92635 0.92593 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.85 -24.73 13.02 55.43 0.72 -24.01 16 2 C 0.08 2.13 5.43 -17.82 -0.10 2.03 16 3 Si 0.88 21.04 29.54 -169.99 -5.02 16.02 16 4 H -0.27 -6.48 7.11 56.52 0.40 -6.08 16 5 H -0.29 -6.86 7.11 56.52 0.40 -6.46 16 6 H -0.29 -6.83 7.11 56.52 0.40 -6.43 16 7 C -0.53 -14.02 7.24 -34.44 -0.25 -14.27 16 8 H 0.06 1.46 7.56 -52.48 -0.40 1.06 16 9 C 0.22 5.24 1.89 -67.22 -0.13 5.11 16 10 H 0.05 1.23 7.77 -51.93 -0.40 0.83 16 11 N -0.64 -15.39 7.08 -103.95 -0.74 -16.12 16 12 C 0.03 0.65 7.47 -2.18 -0.02 0.63 16 13 C -0.15 -2.78 6.11 -25.35 -0.15 -2.93 16 14 C -0.11 -2.25 2.20 -89.24 -0.20 -2.45 16 15 H 0.06 1.27 7.69 -51.93 -0.40 0.87 16 16 C -0.06 -1.13 1.48 -90.62 -0.13 -1.27 16 17 C -0.11 -1.99 4.69 -26.73 -0.13 -2.11 16 18 C -0.12 -1.81 5.92 -26.73 -0.16 -1.97 16 19 C -0.12 -1.54 5.92 -26.73 -0.16 -1.70 16 20 C -0.12 -1.53 5.92 -26.71 -0.16 -1.69 16 21 C -0.12 -1.72 4.97 -26.71 -0.13 -1.85 16 22 H 0.26 7.10 8.31 -40.82 -0.34 6.76 16 23 H 0.32 7.71 8.63 -39.29 -0.34 7.37 16 24 H 0.05 0.85 8.14 -51.93 -0.42 0.43 16 25 H 0.06 1.19 8.14 -51.93 -0.42 0.76 16 26 H 0.05 0.80 8.14 -51.93 -0.42 0.38 16 27 H 0.05 0.91 6.49 -51.92 -0.34 0.57 16 28 H 0.06 1.10 8.12 -51.93 -0.42 0.68 16 29 H 0.09 1.84 6.57 -51.93 -0.34 1.49 16 30 H 0.05 0.99 8.14 -51.93 -0.42 0.57 16 31 H 0.06 0.84 8.14 -51.93 -0.42 0.42 16 32 H 0.05 0.78 8.14 -51.93 -0.42 0.36 16 33 H 0.06 0.75 8.14 -51.93 -0.42 0.33 16 34 H 0.05 0.60 8.14 -51.93 -0.42 0.17 16 35 H 0.05 0.60 8.14 -51.93 -0.42 0.18 16 36 H 0.06 0.75 8.14 -51.93 -0.42 0.33 16 37 H 0.05 0.84 8.14 -51.93 -0.42 0.42 16 38 H 0.06 0.80 6.59 -51.93 -0.34 0.46 16 LS Contribution 287.50 15.07 4.33 4.33 Total: -1.00 -27.59 287.50 -9.18 -36.77 By element: Atomic # 1 Polarization: 12.23 SS G_CDS: -6.77 Total: 5.46 kcal Atomic # 6 Polarization: -20.75 SS G_CDS: -1.71 Total: -22.46 kcal Atomic # 7 Polarization: -40.11 SS G_CDS: -0.01 Total: -40.13 kcal Atomic # 14 Polarization: 21.04 SS G_CDS: -5.02 Total: 16.02 kcal Total LS contribution 4.33 Total: 4.33 kcal Total: -27.59 -9.18 -36.77 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000261241006.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 3.037 kcal (2) G-P(sol) polarization free energy of solvation -27.589 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -24.553 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.176 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.765 kcal (6) G-S(sol) free energy of system = (1) + (5) -33.729 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.26 seconds