Wall clock time and date at job start Mon Mar 30 2020 03:05:00 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31516 * 1 3 3 Si 1.86803 * 119.99827 * 2 1 4 4 H 1.48495 * 109.47283 * 179.97438 * 3 2 1 5 5 H 1.48498 * 109.47081 * 300.00379 * 3 2 1 6 6 H 1.48508 * 109.46924 * 59.99736 * 3 2 1 7 7 C 1.37871 * 120.00242 * 180.02562 * 2 1 3 8 8 H 1.08008 * 119.99824 * 180.02562 * 7 2 1 9 9 C 1.50698 * 120.00313 * 359.97438 * 7 2 1 10 10 H 1.09000 * 110.45890 * 302.42053 * 9 7 2 11 11 N 1.48561 * 110.40734 * 64.82940 * 9 7 2 12 12 C 1.48559 * 104.22103 * 158.26282 * 11 9 7 13 13 C 1.54376 * 104.59510 * 320.51821 * 12 11 9 14 14 C 1.54261 * 105.06236 * 23.85370 * 13 12 11 15 15 H 1.08996 * 110.32238 * 241.00603 * 14 13 12 16 16 C 1.53002 * 110.32743 * 118.89651 * 14 13 12 17 17 C 1.52997 * 109.47143 * 181.45368 * 16 14 13 18 18 C 1.52999 * 109.46991 * 179.97438 * 17 16 14 19 19 C 1.53006 * 109.46626 * 60.00378 * 18 17 16 20 20 C 1.52997 * 109.47127 * 299.99539 * 19 18 17 21 21 C 1.52996 * 109.46969 * 61.45438 * 16 14 13 22 22 H 0.96998 * 119.99941 * 0.02562 * 1 2 3 23 23 H 1.00900 * 110.99794 * 38.70832 * 11 9 7 24 24 H 1.09000 * 110.41111 * 201.73751 * 12 11 9 25 25 H 1.09001 * 110.50974 * 79.34466 * 12 11 9 26 26 H 1.09000 * 110.32682 * 264.95629 * 13 12 11 27 27 H 1.09008 * 110.41207 * 142.79165 * 13 12 11 28 28 H 1.09000 * 109.46497 * 301.45598 * 16 14 13 29 29 H 1.09002 * 109.47153 * 60.00035 * 17 16 14 30 30 H 1.08993 * 109.47194 * 300.00323 * 17 16 14 31 31 H 1.08993 * 109.47839 * 300.00447 * 18 17 16 32 32 H 1.09000 * 109.47160 * 180.02562 * 18 17 16 33 33 H 1.09001 * 109.46801 * 59.99811 * 19 18 17 34 34 H 1.09001 * 109.46998 * 179.97438 * 19 18 17 35 35 H 1.09002 * 109.47153 * 180.02562 * 20 19 18 36 36 H 1.08996 * 109.46952 * 300.00302 * 20 19 18 37 37 H 1.08996 * 109.47452 * 59.99938 * 21 16 14 38 38 H 1.09000 * 109.47054 * 300.00097 * 21 16 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 3.7091 1.3465 0.0006 5 1 1.8903 2.3965 -1.2124 6 1 1.8903 2.3965 1.2125 7 6 2.0046 -1.1940 -0.0005 8 1 3.0847 -1.1939 -0.0001 9 6 1.2512 -2.4991 -0.0005 10 1 0.5869 -2.5556 0.8618 11 7 0.4789 -2.6514 -1.2604 12 6 0.2523 -4.1152 -1.3749 13 6 1.5779 -4.7519 -0.9053 14 6 2.2351 -3.6888 -0.0011 15 1 3.1980 -3.3854 -0.4118 16 6 2.4113 -4.2333 1.4179 17 6 3.0305 -3.1521 2.3058 18 6 3.2062 -3.6965 3.7248 19 6 4.1265 -4.9183 3.6920 20 6 3.5073 -5.9995 2.8040 21 6 3.3319 -5.4549 1.3846 22 1 -0.4850 0.8400 -0.0004 23 1 1.0024 -2.3038 -2.0498 24 1 0.0451 -4.3880 -2.4097 25 1 -0.5687 -4.4263 -0.7289 26 1 2.2176 -4.9691 -1.7607 27 1 1.3826 -5.6624 -0.3386 28 1 1.4398 -4.5212 1.8197 29 1 2.3747 -2.2818 2.3295 30 1 4.0018 -2.8642 1.9038 31 1 2.2347 -3.9842 4.1266 32 1 3.6469 -2.9261 4.3576 33 1 5.0981 -4.6306 3.2902 34 1 4.2521 -5.3059 4.7030 35 1 4.1628 -6.8702 2.7810 36 1 2.5357 -6.2871 3.2058 37 1 4.3032 -5.1671 0.9826 38 1 2.8907 -6.2252 0.7520 RHF calculation, no. of doubly occupied orbitals= 43 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000261241006.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:05:00 Heat of formation + Delta-G solvation = -50.000504 kcal Electronic energy + Delta-G solvation = -16315.027611 eV Core-core repulsion = 13961.746272 eV Total energy + Delta-G solvation = -2353.281340 eV No. of doubly occupied orbitals = 43 Molecular weight (most abundant/longest-lived isotopes) = 223.163 amu Computer time = 0.31 seconds Orbital eigenvalues (eV) -40.42470 -38.04674 -34.52263 -32.83185 -31.67261 -30.03105 -28.51663 -26.08979 -23.55643 -22.99199 -21.93343 -20.59451 -20.28364 -18.66593 -16.61336 -16.56210 -15.94608 -15.28922 -15.01963 -14.85218 -14.47206 -14.23567 -14.08950 -13.72200 -13.38290 -12.99455 -12.89320 -12.82875 -12.34608 -12.17372 -12.08763 -11.93497 -11.61965 -11.53440 -11.28743 -11.09269 -11.07534 -10.66131 -10.55291 -10.48295 -8.83515 -8.00866 -6.16850 1.39816 1.42789 1.52518 2.45899 3.23502 3.81544 3.90228 3.93813 4.06189 4.22791 4.28534 4.40187 4.52751 4.59818 4.68226 4.71482 4.77027 4.84213 4.89606 4.92579 4.98618 5.10912 5.17703 5.24030 5.28942 5.34747 5.34934 5.43215 5.46995 5.54766 5.67764 5.74281 5.77766 5.92573 6.22458 6.54763 7.03341 7.12077 7.53845 9.05159 Molecular weight = 223.16amu Principal moments of inertia in cm(-1) A = 0.024986 B = 0.010191 C = 0.007816 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1120.368729 B = 2746.973587 C = 3581.536215 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.892 5.892 2 C 0.028 3.972 3 Si 0.942 3.058 4 H -0.268 1.268 5 H -0.283 1.283 6 H -0.284 1.284 7 C -0.532 4.532 8 H 0.050 0.950 9 C 0.218 3.782 10 H 0.003 0.997 11 N -0.670 5.670 12 C 0.033 3.967 13 C -0.142 4.142 14 C -0.106 4.106 15 H 0.048 0.952 16 C -0.060 4.060 17 C -0.107 4.107 18 C -0.118 4.118 19 C -0.114 4.114 20 C -0.115 4.115 21 C -0.109 4.109 22 H 0.255 0.745 23 H 0.318 0.682 24 H 0.072 0.928 25 H 0.054 0.946 26 H 0.064 0.936 27 H 0.076 0.924 28 H 0.047 0.953 29 H 0.043 0.957 30 H 0.046 0.954 31 H 0.055 0.945 32 H 0.059 0.941 33 H 0.059 0.941 34 H 0.074 0.926 35 H 0.076 0.924 36 H 0.059 0.941 37 H 0.055 0.945 38 H 0.067 0.933 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.947 -11.120 3.736 13.634 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.529 5.529 2 C -0.174 4.174 3 Si 0.769 3.231 4 H -0.192 1.192 5 H -0.209 1.209 6 H -0.210 1.210 7 C -0.570 4.570 8 H 0.068 0.932 9 C 0.110 3.890 10 H 0.021 0.979 11 N -0.297 5.297 12 C -0.098 4.098 13 C -0.181 4.181 14 C -0.126 4.126 15 H 0.066 0.934 16 C -0.079 4.079 17 C -0.144 4.144 18 C -0.155 4.155 19 C -0.151 4.151 20 C -0.152 4.152 21 C -0.146 4.146 22 H 0.064 0.936 23 H 0.133 0.867 24 H 0.090 0.910 25 H 0.073 0.927 26 H 0.083 0.917 27 H 0.095 0.905 28 H 0.066 0.934 29 H 0.062 0.938 30 H 0.065 0.935 31 H 0.073 0.927 32 H 0.078 0.922 33 H 0.078 0.922 34 H 0.092 0.908 35 H 0.095 0.905 36 H 0.078 0.922 37 H 0.074 0.926 38 H 0.085 0.915 Dipole moment (debyes) X Y Z Total from point charges 6.088 -10.796 3.985 13.019 hybrid contribution 0.928 1.030 -0.345 1.428 sum 7.015 -9.766 3.640 12.563 Atomic orbital electron populations 1.70232 1.07100 1.26323 1.49275 1.25716 0.95336 1.01894 0.94485 0.85771 0.79271 0.80777 0.77330 1.19237 1.20932 1.21030 1.21349 0.92215 0.91456 1.52028 0.93209 1.19852 0.88659 0.91855 0.88597 0.97918 1.63489 1.49254 1.11419 1.05504 1.23035 0.96716 0.89850 1.00174 1.22929 0.97434 0.98595 0.99167 1.22557 0.98804 0.95941 0.95345 0.93366 1.20959 0.97915 0.95129 0.93934 1.21455 0.99847 0.97896 0.95224 1.21552 0.99867 0.98044 0.96066 1.21516 0.98384 0.95057 1.00154 1.21531 1.01073 0.98004 0.94610 1.21612 0.98977 0.96512 0.97504 0.93618 0.86714 0.90985 0.92719 0.91742 0.90536 0.93407 0.93830 0.93518 0.92663 0.92187 0.92210 0.90771 0.90537 0.92222 0.92632 0.91463 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -53.29 13.02 21.45 0.28 -53.01 16 2 C 0.03 1.57 5.43 84.65 0.46 2.03 16 3 Si 0.94 44.17 29.54 68.60 2.03 46.19 16 4 H -0.27 -12.16 7.11 99.48 0.71 -11.45 16 5 H -0.28 -13.13 7.11 99.48 0.71 -12.42 16 6 H -0.28 -13.19 7.11 99.48 0.71 -12.48 16 7 C -0.53 -28.94 7.24 25.60 0.19 -28.75 16 8 H 0.05 2.70 7.56 -2.91 -0.02 2.68 16 9 C 0.22 10.93 1.89 44.31 0.08 11.01 16 10 H 0.00 0.17 7.77 -2.39 -0.02 0.15 16 11 N -0.67 -32.54 7.08 -482.80 -3.42 -35.96 16 12 C 0.03 1.25 7.47 86.45 0.65 1.89 16 13 C -0.14 -4.83 6.11 31.49 0.19 -4.64 16 14 C -0.11 -4.23 2.20 -9.90 -0.02 -4.25 16 15 H 0.05 2.03 7.69 -2.39 -0.02 2.01 16 16 C -0.06 -2.11 1.48 -10.79 -0.02 -2.13 16 17 C -0.11 -3.90 4.69 30.59 0.14 -3.76 16 18 C -0.12 -3.42 5.92 30.60 0.18 -3.24 16 19 C -0.11 -2.65 5.92 30.60 0.18 -2.47 16 20 C -0.11 -2.60 5.92 30.61 0.18 -2.42 16 21 C -0.11 -2.95 4.97 30.61 0.15 -2.80 16 22 H 0.25 14.56 8.31 -92.71 -0.77 13.79 16 23 H 0.32 15.48 8.63 -89.69 -0.77 14.70 16 24 H 0.07 2.41 8.14 -2.39 -0.02 2.39 16 25 H 0.05 2.14 8.14 -2.39 -0.02 2.12 16 26 H 0.06 1.99 8.14 -2.39 -0.02 1.97 16 27 H 0.08 2.29 6.49 -2.38 -0.02 2.27 16 28 H 0.05 1.77 8.12 -2.39 -0.02 1.75 16 29 H 0.04 1.94 6.57 -2.39 -0.02 1.92 16 30 H 0.05 1.73 8.14 -2.39 -0.02 1.71 16 31 H 0.05 1.60 8.14 -2.39 -0.02 1.58 16 32 H 0.06 1.66 8.14 -2.39 -0.02 1.64 16 33 H 0.06 1.38 8.14 -2.39 -0.02 1.36 16 34 H 0.07 1.44 8.14 -2.39 -0.02 1.42 16 35 H 0.08 1.42 8.14 -2.39 -0.02 1.40 16 36 H 0.06 1.35 8.14 -2.39 -0.02 1.33 16 37 H 0.05 1.52 8.14 -2.39 -0.02 1.50 16 38 H 0.07 1.69 6.59 -2.39 -0.02 1.67 16 Total: -1.00 -60.75 287.50 1.49 -59.26 By element: Atomic # 1 Polarization: 22.78 SS G_CDS: 0.24 Total: 23.02 kcal Atomic # 6 Polarization: -41.87 SS G_CDS: 2.37 Total: -39.50 kcal Atomic # 7 Polarization: -85.83 SS G_CDS: -3.14 Total: -88.97 kcal Atomic # 14 Polarization: 44.17 SS G_CDS: 2.03 Total: 46.19 kcal Total: -60.75 1.49 -59.26 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000261241006.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 9.260 kcal (2) G-P(sol) polarization free energy of solvation -60.753 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -51.494 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.493 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -59.260 kcal (6) G-S(sol) free energy of system = (1) + (5) -50.001 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.31 seconds