Wall clock time and date at job start Mon Mar 30 2020 02:57:08 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31512 * 1 3 3 Si 1.86808 * 119.99849 * 2 1 4 4 H 1.48500 * 109.46892 * 89.99824 * 3 2 1 5 5 H 1.48498 * 109.46942 * 210.00006 * 3 2 1 6 6 H 1.48494 * 109.46887 * 329.99690 * 3 2 1 7 7 C 1.37877 * 120.00290 * 180.27481 * 2 1 3 8 8 H 1.07999 * 120.00185 * 359.72305 * 7 2 1 9 9 C 1.50700 * 120.00058 * 179.72424 * 7 2 1 10 10 C 1.53006 * 109.47136 * 179.97438 * 9 7 2 11 11 H 1.09004 * 109.90251 * 54.46529 * 10 9 7 12 12 N 1.47893 * 109.91694 * 293.36454 * 10 9 7 13 13 C 1.48538 * 105.81911 * 215.31506 * 12 10 9 14 14 C 1.54931 * 103.22628 * 39.20877 * 13 12 10 15 15 C 1.53994 * 109.91778 * 175.77151 * 10 9 7 16 16 H 1.08994 * 110.31128 * 239.49648 * 15 10 9 17 17 C 1.53003 * 110.30864 * 1.66613 * 15 10 9 18 18 C 1.54262 * 110.03053 * 184.59077 * 17 15 10 19 19 C 1.54890 * 104.19619 * 217.10320 * 18 17 15 20 20 C 1.54893 * 102.74686 * 37.94044 * 19 18 17 21 21 C 1.53870 * 110.03405 * 67.42363 * 17 15 10 22 22 H 0.96994 * 120.00358 * 359.97438 * 1 2 3 23 23 H 1.08997 * 109.47170 * 299.99940 * 9 7 2 24 24 H 1.08997 * 109.47113 * 60.00064 * 9 7 2 25 25 H 1.00904 * 111.00499 * 335.82977 * 12 10 9 26 26 H 1.09001 * 110.66441 * 157.64282 * 13 12 10 27 27 H 1.09004 * 110.66637 * 280.60570 * 13 12 10 28 28 H 1.08999 * 110.72473 * 80.94715 * 14 13 12 29 29 H 1.09001 * 110.72226 * 204.04981 * 14 13 12 30 30 H 1.08997 * 110.01629 * 306.03293 * 17 15 10 31 31 H 1.08997 * 110.48743 * 335.78127 * 18 17 15 32 32 H 1.09001 * 110.49007 * 98.42579 * 18 17 15 33 33 H 1.09001 * 110.76021 * 279.63109 * 19 18 17 34 34 H 1.08998 * 110.92001 * 156.33105 * 19 18 17 35 35 H 1.09004 * 110.48773 * 203.37989 * 20 19 18 36 36 H 1.09002 * 110.59682 * 80.79177 * 20 19 18 37 37 H 1.09002 * 110.03202 * 238.56958 * 21 17 15 38 38 H 1.09003 * 110.03560 * 359.95097 * 21 17 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 2.4965 2.0465 1.4001 5 1 3.5467 1.4403 -0.7000 6 1 1.4466 2.6526 -0.7001 7 6 2.0046 -1.1940 -0.0057 8 1 1.4647 -2.1293 -0.0057 9 6 3.5116 -1.1939 -0.0120 10 6 4.0216 -2.6364 -0.0169 11 1 3.5803 -3.1833 -0.8502 12 7 3.6750 -3.2977 1.2597 13 6 4.8090 -4.2070 1.5656 14 6 6.0495 -3.3827 1.1388 15 6 5.5574 -2.6495 -0.1301 16 1 5.8663 -3.1913 -1.0240 17 6 6.0997 -1.2191 -0.1608 18 6 7.6252 -1.2372 -0.3896 19 6 8.1548 -0.0765 0.4886 20 6 7.2595 -0.1658 1.7494 21 6 5.8673 -0.5379 1.1991 22 1 -0.4850 0.8400 0.0004 23 1 3.8711 -0.6780 -0.9022 24 1 3.8786 -0.6822 0.8777 25 1 3.5470 -2.6192 1.9954 26 1 4.8448 -4.4321 2.6315 27 1 4.7344 -5.1248 0.9822 28 1 6.3238 -2.6685 1.9152 29 1 6.8880 -4.0395 0.9073 30 1 5.6096 -0.6511 -0.9515 31 1 8.0487 -2.1869 -0.0626 32 1 7.8557 -1.0570 -1.4396 33 1 8.0194 0.8812 -0.0142 34 1 9.2024 -0.2306 0.7470 35 1 7.2231 0.7964 2.2604 36 1 7.6230 -0.9413 2.4236 37 1 5.2650 0.3612 1.0683 38 1 5.3673 -1.2260 1.8808 RHF calculation, no. of doubly occupied orbitals= 43 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000261244009.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:57:08 Heat of formation + Delta-G solvation = -10.075833 kcal Electronic energy + Delta-G solvation = -16537.819215 eV Core-core repulsion = 14186.269139 eV Total energy + Delta-G solvation = -2351.550076 eV No. of doubly occupied orbitals = 43 Molecular weight (most abundant/longest-lived isotopes) = 223.163 amu Computer time = 0.26 seconds Orbital eigenvalues (eV) -39.94320 -36.40712 -32.97131 -31.02245 -30.34879 -28.55927 -26.82044 -25.84543 -22.37095 -21.42414 -20.46966 -19.75792 -17.95766 -16.62194 -16.04762 -15.27107 -14.73518 -14.36965 -14.05890 -13.74646 -13.36402 -13.02020 -12.51569 -12.00951 -11.76747 -11.40599 -11.21307 -11.16841 -10.93830 -10.86993 -10.80141 -10.51197 -10.36519 -10.19723 -10.04316 -9.72876 -9.63550 -9.31113 -8.98937 -8.43979 -7.76183 -5.95112 -3.90356 3.31311 3.40057 3.41300 4.49789 4.77650 4.81259 4.86837 4.96905 5.20654 5.28709 5.37957 5.59845 5.65659 5.71865 5.75794 5.79940 5.82478 5.92171 5.97061 6.01731 6.05599 6.09841 6.26209 6.31806 6.37671 6.40842 6.45567 6.60252 6.70799 6.77504 6.80634 7.16327 7.40727 7.68526 7.89581 8.16321 8.67282 9.17707 9.67658 11.18801 Molecular weight = 223.16amu Principal moments of inertia in cm(-1) A = 0.025029 B = 0.011434 C = 0.008694 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1118.419437 B = 2448.307870 C = 3219.877392 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.905 5.905 2 C 0.064 3.936 3 Si 0.870 3.130 4 H -0.279 1.279 5 H -0.265 1.265 6 H -0.290 1.290 7 C -0.506 4.506 8 H 0.078 0.922 9 C -0.030 4.030 10 C 0.093 3.907 11 H 0.073 0.927 12 N -0.657 5.657 13 C 0.038 3.962 14 C -0.157 4.157 15 C -0.110 4.110 16 H 0.066 0.934 17 C -0.083 4.083 18 C -0.120 4.120 19 C -0.124 4.124 20 C -0.128 4.128 21 C -0.119 4.119 22 H 0.260 0.740 23 H 0.022 0.978 24 H 0.030 0.970 25 H 0.339 0.661 26 H 0.063 0.937 27 H 0.070 0.930 28 H 0.073 0.927 29 H 0.058 0.942 30 H 0.080 0.920 31 H 0.063 0.937 32 H 0.058 0.942 33 H 0.063 0.937 34 H 0.058 0.942 35 H 0.059 0.941 36 H 0.060 0.940 37 H 0.065 0.935 38 H 0.071 0.929 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 16.138 -2.508 2.227 16.483 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.545 5.545 2 C -0.136 4.136 3 Si 0.698 3.302 4 H -0.205 1.205 5 H -0.190 1.190 6 H -0.216 1.216 7 C -0.544 4.544 8 H 0.096 0.904 9 C -0.067 4.067 10 C -0.017 4.017 11 H 0.092 0.908 12 N -0.285 5.285 13 C -0.092 4.092 14 C -0.196 4.196 15 C -0.130 4.130 16 H 0.084 0.916 17 C -0.101 4.101 18 C -0.158 4.158 19 C -0.162 4.162 20 C -0.166 4.166 21 C -0.157 4.157 22 H 0.070 0.930 23 H 0.040 0.960 24 H 0.048 0.952 25 H 0.156 0.844 26 H 0.081 0.919 27 H 0.088 0.912 28 H 0.091 0.909 29 H 0.077 0.923 30 H 0.098 0.902 31 H 0.082 0.918 32 H 0.077 0.923 33 H 0.082 0.918 34 H 0.077 0.923 35 H 0.077 0.923 36 H 0.078 0.922 37 H 0.084 0.916 38 H 0.090 0.910 Dipole moment (debyes) X Y Z Total from point charges 15.479 -2.895 1.958 15.868 hybrid contribution 1.067 1.595 0.200 1.930 sum 16.546 -1.299 2.157 16.736 Atomic orbital electron populations 1.69914 1.06206 1.26473 1.51933 1.25020 0.94631 0.98739 0.95190 0.86940 0.80500 0.84413 0.78372 1.20464 1.18994 1.21617 1.21208 0.89432 0.94504 1.49252 0.90402 1.20325 0.97518 0.91588 0.97264 1.22283 0.90002 0.96947 0.92494 0.90843 1.62752 1.38765 1.21539 1.05455 1.23102 0.89185 0.97226 0.99727 1.23321 0.98759 0.99192 0.98305 1.22559 0.97993 0.94985 0.97463 0.91575 1.21846 0.94256 0.95932 0.98107 1.22466 0.95991 0.98233 0.99116 1.22467 0.98384 0.98821 0.96491 1.22452 0.96196 1.00705 0.97217 1.22500 0.95834 1.00645 0.96686 0.92992 0.95967 0.95201 0.84407 0.91880 0.91186 0.90867 0.92281 0.90159 0.91842 0.92292 0.91841 0.92293 0.92266 0.92154 0.91620 0.91036 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.91 -28.25 13.96 55.43 0.77 -27.48 16 2 C 0.06 1.88 5.47 -17.82 -0.10 1.78 16 3 Si 0.87 21.60 27.47 -169.99 -4.67 16.93 16 4 H -0.28 -6.79 7.11 56.52 0.40 -6.39 16 5 H -0.27 -6.25 6.54 56.52 0.37 -5.88 16 6 H -0.29 -7.25 7.11 56.52 0.40 -6.85 16 7 C -0.51 -14.27 9.45 -34.44 -0.33 -14.60 16 8 H 0.08 2.44 7.99 -52.49 -0.42 2.02 16 9 C -0.03 -0.68 2.04 -27.88 -0.06 -0.74 16 10 C 0.09 1.83 3.05 -66.64 -0.20 1.63 16 11 H 0.07 1.58 8.14 -51.93 -0.42 1.16 16 12 N -0.66 -12.51 7.16 -103.13 -0.74 -13.24 16 13 C 0.04 0.56 7.55 -1.90 -0.01 0.55 16 14 C -0.16 -2.17 5.26 -24.87 -0.13 -2.30 16 15 C -0.11 -1.74 2.75 -89.26 -0.25 -1.99 16 16 H 0.07 1.01 8.14 -51.93 -0.42 0.59 16 17 C -0.08 -1.29 2.20 -89.50 -0.20 -1.49 16 18 C -0.12 -1.54 6.23 -25.07 -0.16 -1.70 16 19 C -0.12 -1.49 6.91 -24.74 -0.17 -1.66 16 20 C -0.13 -1.65 6.64 -25.07 -0.17 -1.82 16 21 C -0.12 -1.88 3.51 -25.62 -0.09 -1.97 16 22 H 0.26 7.64 8.31 -40.82 -0.34 7.30 16 23 H 0.02 0.52 5.45 -51.93 -0.28 0.24 16 24 H 0.03 0.67 3.63 -51.93 -0.19 0.48 16 25 H 0.34 6.62 7.93 -39.29 -0.31 6.31 16 26 H 0.06 0.84 8.14 -51.93 -0.42 0.42 16 27 H 0.07 1.03 8.14 -51.93 -0.42 0.60 16 28 H 0.07 1.00 5.07 -51.93 -0.26 0.74 16 29 H 0.06 0.73 8.14 -51.93 -0.42 0.30 16 30 H 0.08 1.41 6.26 -51.93 -0.33 1.09 16 31 H 0.06 0.77 7.24 -51.93 -0.38 0.39 16 32 H 0.06 0.72 8.14 -51.93 -0.42 0.29 16 33 H 0.06 0.77 8.14 -51.93 -0.42 0.34 16 34 H 0.06 0.61 8.14 -51.93 -0.42 0.19 16 35 H 0.06 0.73 8.14 -51.93 -0.42 0.31 16 36 H 0.06 0.72 7.68 -51.93 -0.40 0.32 16 37 H 0.07 1.17 7.17 -51.93 -0.37 0.80 16 38 H 0.07 1.16 4.87 -51.93 -0.25 0.91 16 LS Contribution 275.26 15.07 4.15 4.15 Total: -1.00 -29.76 275.26 -8.50 -38.26 By element: Atomic # 1 Polarization: 11.84 SS G_CDS: -6.16 Total: 5.68 kcal Atomic # 6 Polarization: -22.45 SS G_CDS: -1.85 Total: -24.30 kcal Atomic # 7 Polarization: -40.76 SS G_CDS: 0.04 Total: -40.72 kcal Atomic # 14 Polarization: 21.60 SS G_CDS: -4.67 Total: 16.93 kcal Total LS contribution 4.15 Total: 4.15 kcal Total: -29.76 -8.50 -38.26 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000261244009.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 28.188 kcal (2) G-P(sol) polarization free energy of solvation -29.761 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -1.573 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.503 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.264 kcal (6) G-S(sol) free energy of system = (1) + (5) -10.076 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.26 seconds