Wall clock time and date at job start Mon Mar 30 2020 02:57:08 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31512 * 1 3 3 Si 1.86808 * 119.99849 * 2 1 4 4 H 1.48500 * 109.46892 * 89.99824 * 3 2 1 5 5 H 1.48498 * 109.46942 * 210.00006 * 3 2 1 6 6 H 1.48494 * 109.46887 * 329.99690 * 3 2 1 7 7 C 1.37877 * 120.00290 * 180.27481 * 2 1 3 8 8 H 1.07999 * 120.00185 * 359.72305 * 7 2 1 9 9 C 1.50700 * 120.00058 * 179.72424 * 7 2 1 10 10 C 1.53006 * 109.47136 * 179.97438 * 9 7 2 11 11 H 1.09004 * 109.90251 * 54.46529 * 10 9 7 12 12 N 1.47893 * 109.91694 * 293.36454 * 10 9 7 13 13 C 1.48538 * 105.81911 * 215.31506 * 12 10 9 14 14 C 1.54931 * 103.22628 * 39.20877 * 13 12 10 15 15 C 1.53994 * 109.91778 * 175.77151 * 10 9 7 16 16 H 1.08994 * 110.31128 * 239.49648 * 15 10 9 17 17 C 1.53003 * 110.30864 * 1.66613 * 15 10 9 18 18 C 1.54262 * 110.03053 * 184.59077 * 17 15 10 19 19 C 1.54890 * 104.19619 * 217.10320 * 18 17 15 20 20 C 1.54893 * 102.74686 * 37.94044 * 19 18 17 21 21 C 1.53870 * 110.03405 * 67.42363 * 17 15 10 22 22 H 0.96994 * 120.00358 * 359.97438 * 1 2 3 23 23 H 1.08997 * 109.47170 * 299.99940 * 9 7 2 24 24 H 1.08997 * 109.47113 * 60.00064 * 9 7 2 25 25 H 1.00904 * 111.00499 * 335.82977 * 12 10 9 26 26 H 1.09001 * 110.66441 * 157.64282 * 13 12 10 27 27 H 1.09004 * 110.66637 * 280.60570 * 13 12 10 28 28 H 1.08999 * 110.72473 * 80.94715 * 14 13 12 29 29 H 1.09001 * 110.72226 * 204.04981 * 14 13 12 30 30 H 1.08997 * 110.01629 * 306.03293 * 17 15 10 31 31 H 1.08997 * 110.48743 * 335.78127 * 18 17 15 32 32 H 1.09001 * 110.49007 * 98.42579 * 18 17 15 33 33 H 1.09001 * 110.76021 * 279.63109 * 19 18 17 34 34 H 1.08998 * 110.92001 * 156.33105 * 19 18 17 35 35 H 1.09004 * 110.48773 * 203.37989 * 20 19 18 36 36 H 1.09002 * 110.59682 * 80.79177 * 20 19 18 37 37 H 1.09002 * 110.03202 * 238.56958 * 21 17 15 38 38 H 1.09003 * 110.03560 * 359.95097 * 21 17 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 2.4965 2.0465 1.4001 5 1 3.5467 1.4403 -0.7000 6 1 1.4466 2.6526 -0.7001 7 6 2.0046 -1.1940 -0.0057 8 1 1.4647 -2.1293 -0.0057 9 6 3.5116 -1.1939 -0.0120 10 6 4.0216 -2.6364 -0.0169 11 1 3.5803 -3.1833 -0.8502 12 7 3.6750 -3.2977 1.2597 13 6 4.8090 -4.2070 1.5656 14 6 6.0495 -3.3827 1.1388 15 6 5.5574 -2.6495 -0.1301 16 1 5.8663 -3.1913 -1.0240 17 6 6.0997 -1.2191 -0.1608 18 6 7.6252 -1.2372 -0.3896 19 6 8.1548 -0.0765 0.4886 20 6 7.2595 -0.1658 1.7494 21 6 5.8673 -0.5379 1.1991 22 1 -0.4850 0.8400 0.0004 23 1 3.8711 -0.6780 -0.9022 24 1 3.8786 -0.6822 0.8777 25 1 3.5470 -2.6192 1.9954 26 1 4.8448 -4.4321 2.6315 27 1 4.7344 -5.1248 0.9822 28 1 6.3238 -2.6685 1.9152 29 1 6.8880 -4.0395 0.9073 30 1 5.6096 -0.6511 -0.9515 31 1 8.0487 -2.1869 -0.0626 32 1 7.8557 -1.0570 -1.4396 33 1 8.0194 0.8812 -0.0142 34 1 9.2024 -0.2306 0.7470 35 1 7.2231 0.7964 2.2604 36 1 7.6230 -0.9413 2.4236 37 1 5.2650 0.3612 1.0683 38 1 5.3673 -1.2260 1.8808 RHF calculation, no. of doubly occupied orbitals= 43 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000261244009.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:57:08 Heat of formation + Delta-G solvation = -29.543800 kcal Electronic energy + Delta-G solvation = -16538.663409 eV Core-core repulsion = 14186.269139 eV Total energy + Delta-G solvation = -2352.394270 eV No. of doubly occupied orbitals = 43 Molecular weight (most abundant/longest-lived isotopes) = 223.163 amu Computer time = 0.32 seconds Orbital eigenvalues (eV) -41.24165 -37.60905 -35.05486 -32.67007 -31.74965 -29.63661 -28.41850 -27.22951 -24.17780 -22.65012 -21.53086 -21.19389 -19.32109 -18.71115 -17.28366 -16.69020 -16.16922 -15.81354 -15.48212 -15.31793 -14.65554 -14.59340 -14.05269 -13.51201 -13.28496 -13.05628 -12.66527 -12.52574 -12.36403 -12.02446 -11.89497 -11.83496 -11.73465 -11.53614 -11.39331 -11.27969 -11.04379 -11.01799 -10.91611 -10.63247 -9.21829 -8.23063 -6.23213 1.32136 1.34662 1.45563 2.36836 3.10555 3.51473 3.68786 3.75330 3.83632 4.05080 4.17095 4.30227 4.49448 4.60457 4.61266 4.62500 4.71550 4.78155 4.85392 4.90043 4.93939 5.00936 5.07770 5.10830 5.16628 5.21283 5.24637 5.31598 5.36361 5.49073 5.56251 5.60941 5.66476 5.75503 6.19606 6.43363 6.64437 6.86745 7.38427 8.94595 Molecular weight = 223.16amu Principal moments of inertia in cm(-1) A = 0.025029 B = 0.011434 C = 0.008694 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1118.419437 B = 2448.307870 C = 3219.877392 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.957 5.957 2 C 0.001 3.999 3 Si 0.941 3.059 4 H -0.266 1.266 5 H -0.245 1.245 6 H -0.290 1.290 7 C -0.509 4.509 8 H 0.029 0.971 9 C -0.018 4.018 10 C 0.093 3.907 11 H 0.043 0.957 12 N -0.682 5.682 13 C 0.038 3.962 14 C -0.143 4.143 15 C -0.102 4.102 16 H 0.074 0.926 17 C -0.086 4.086 18 C -0.113 4.113 19 C -0.121 4.121 20 C -0.123 4.123 21 C -0.125 4.125 22 H 0.262 0.738 23 H 0.019 0.981 24 H 0.044 0.956 25 H 0.333 0.667 26 H 0.083 0.917 27 H 0.073 0.927 28 H 0.080 0.920 29 H 0.087 0.913 30 H 0.054 0.946 31 H 0.078 0.922 32 H 0.064 0.936 33 H 0.059 0.941 34 H 0.082 0.918 35 H 0.063 0.937 36 H 0.076 0.924 37 H 0.040 0.960 38 H 0.064 0.936 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 19.773 -2.162 2.932 20.106 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.599 5.599 2 C -0.194 4.194 3 Si 0.765 3.235 4 H -0.191 1.191 5 H -0.169 1.169 6 H -0.216 1.216 7 C -0.547 4.547 8 H 0.047 0.953 9 C -0.055 4.055 10 C -0.017 4.017 11 H 0.062 0.938 12 N -0.310 5.310 13 C -0.092 4.092 14 C -0.182 4.182 15 C -0.122 4.122 16 H 0.093 0.907 17 C -0.104 4.104 18 C -0.151 4.151 19 C -0.158 4.158 20 C -0.160 4.160 21 C -0.162 4.162 22 H 0.071 0.929 23 H 0.037 0.963 24 H 0.062 0.938 25 H 0.150 0.850 26 H 0.101 0.899 27 H 0.091 0.909 28 H 0.098 0.902 29 H 0.105 0.895 30 H 0.072 0.928 31 H 0.096 0.904 32 H 0.083 0.917 33 H 0.078 0.922 34 H 0.101 0.899 35 H 0.082 0.918 36 H 0.094 0.906 37 H 0.058 0.942 38 H 0.082 0.918 Dipole moment (debyes) X Y Z Total from point charges 19.140 -2.570 2.662 19.495 hybrid contribution -0.168 1.375 -0.027 1.385 sum 18.972 -1.196 2.635 19.192 Atomic orbital electron populations 1.70088 1.08294 1.27629 1.53858 1.25958 0.95466 1.03089 0.94935 0.85797 0.79610 0.78914 0.79156 1.19111 1.16903 1.21590 1.21500 0.92318 0.92621 1.48305 0.95272 1.20214 0.93646 0.94160 0.97482 1.22107 0.93027 0.94381 0.92191 0.93838 1.62671 1.41552 1.21865 1.04900 1.23204 0.88293 0.96515 1.01157 1.23231 0.98776 0.99133 0.97019 1.22458 0.94537 0.96025 0.99179 0.90730 1.21819 0.96476 0.94955 0.97184 1.22421 0.93338 0.99431 0.99898 1.22474 0.99465 0.98270 0.95613 1.22426 0.94245 1.01465 0.97870 1.22477 0.97508 0.99331 0.96874 0.92920 0.96294 0.93826 0.85020 0.89866 0.90904 0.90174 0.89491 0.92770 0.90363 0.91674 0.92214 0.89922 0.91808 0.90564 0.94162 0.91777 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.96 -62.00 13.96 21.45 0.30 -61.70 16 2 C 0.00 0.05 5.47 84.66 0.46 0.52 16 3 Si 0.94 45.20 27.47 68.60 1.88 47.08 16 4 H -0.27 -12.19 7.11 99.48 0.71 -11.48 16 5 H -0.25 -10.89 6.54 99.48 0.65 -10.24 16 6 H -0.29 -13.85 7.11 99.48 0.71 -13.15 16 7 C -0.51 -29.98 9.45 25.60 0.24 -29.73 16 8 H 0.03 1.94 7.99 -2.91 -0.02 1.92 16 9 C -0.02 -0.83 2.04 29.85 0.06 -0.77 16 10 C 0.09 3.72 3.05 45.06 0.14 3.86 16 11 H 0.04 1.96 8.14 -2.38 -0.02 1.94 16 12 N -0.68 -26.07 7.16 -480.20 -3.44 -29.50 16 13 C 0.04 1.05 7.55 86.65 0.65 1.70 16 14 C -0.14 -3.46 5.26 31.80 0.17 -3.30 16 15 C -0.10 -3.04 2.75 -9.91 -0.03 -3.07 16 16 H 0.07 2.11 8.14 -2.39 -0.02 2.09 16 17 C -0.09 -2.48 2.20 -10.07 -0.02 -2.50 16 18 C -0.11 -2.47 6.23 31.67 0.20 -2.27 16 19 C -0.12 -2.40 6.91 31.89 0.22 -2.18 16 20 C -0.12 -2.71 6.64 31.67 0.21 -2.50 16 21 C -0.12 -3.65 3.51 31.31 0.11 -3.54 16 22 H 0.26 15.90 8.31 -92.71 -0.77 15.13 16 23 H 0.02 0.89 5.45 -2.39 -0.01 0.88 16 24 H 0.04 1.93 3.63 -2.39 -0.01 1.93 16 25 H 0.33 13.14 7.93 -89.69 -0.71 12.43 16 26 H 0.08 1.99 8.14 -2.39 -0.02 1.97 16 27 H 0.07 1.99 8.14 -2.38 -0.02 1.97 16 28 H 0.08 1.87 5.07 -2.39 -0.01 1.86 16 29 H 0.09 1.70 8.14 -2.39 -0.02 1.68 16 30 H 0.05 1.84 6.26 -2.39 -0.01 1.83 16 31 H 0.08 1.50 7.24 -2.39 -0.02 1.48 16 32 H 0.06 1.35 8.14 -2.39 -0.02 1.33 16 33 H 0.06 1.23 8.14 -2.39 -0.02 1.21 16 34 H 0.08 1.30 8.14 -2.39 -0.02 1.28 16 35 H 0.06 1.36 8.14 -2.39 -0.02 1.34 16 36 H 0.08 1.46 7.68 -2.39 -0.02 1.44 16 37 H 0.04 1.37 7.17 -2.39 -0.02 1.35 16 38 H 0.06 1.96 4.87 -2.39 -0.01 1.94 16 Total: -1.00 -67.20 275.26 1.43 -65.77 By element: Atomic # 1 Polarization: 21.86 SS G_CDS: 0.27 Total: 22.13 kcal Atomic # 6 Polarization: -46.19 SS G_CDS: 2.41 Total: -43.78 kcal Atomic # 7 Polarization: -88.07 SS G_CDS: -3.14 Total: -91.21 kcal Atomic # 14 Polarization: 45.20 SS G_CDS: 1.88 Total: 47.08 kcal Total: -67.20 1.43 -65.77 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000261244009.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 36.229 kcal (2) G-P(sol) polarization free energy of solvation -67.204 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -30.975 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.431 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.773 kcal (6) G-S(sol) free energy of system = (1) + (5) -29.544 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.32 seconds