Wall clock time and date at job start Mon Mar 30 2020 02:57:11 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31513 * 1 3 3 Si 1.86809 * 119.99938 * 2 1 4 4 H 1.48503 * 109.47037 * 269.99617 * 3 2 1 5 5 H 1.48500 * 109.46988 * 29.99774 * 3 2 1 6 6 H 1.48505 * 109.47005 * 149.99601 * 3 2 1 7 7 C 1.37877 * 119.99992 * 179.97438 * 2 1 3 8 8 H 1.07992 * 119.99844 * 0.02562 * 7 2 1 9 9 C 1.50701 * 120.00011 * 180.02562 * 7 2 1 10 10 C 1.52995 * 109.47348 * 180.02562 * 9 7 2 11 11 H 1.08997 * 109.90473 * 298.09489 * 10 9 7 12 12 N 1.47907 * 109.91533 * 59.19181 * 10 9 7 13 13 C 1.48530 * 105.81675 * 144.68287 * 12 10 9 14 14 C 1.54930 * 103.23346 * 320.79294 * 13 12 10 15 15 C 1.53991 * 109.92084 * 176.98684 * 10 9 7 16 16 H 1.09003 * 110.30990 * 120.50457 * 15 10 9 17 17 C 1.53003 * 110.30670 * 358.34120 * 15 10 9 18 18 C 1.54269 * 110.03298 * 185.15026 * 17 15 10 19 19 C 1.54963 * 104.16161 * 217.13901 * 18 17 15 20 20 C 1.54891 * 102.77594 * 37.88156 * 19 18 17 21 21 C 1.53869 * 110.03288 * 67.92896 * 17 15 10 22 22 H 0.97005 * 119.99664 * 0.02562 * 1 2 3 23 23 H 1.09000 * 109.47243 * 59.99922 * 9 7 2 24 24 H 1.09005 * 109.46986 * 300.00701 * 9 7 2 25 25 H 1.00897 * 111.00055 * 265.19891 * 12 10 9 26 26 H 1.08999 * 110.66652 * 79.23316 * 13 12 10 27 27 H 1.09006 * 110.66378 * 202.35776 * 13 12 10 28 28 H 1.09002 * 110.72820 * 155.76893 * 14 13 12 29 29 H 1.08996 * 110.72714 * 278.88520 * 14 13 12 30 30 H 1.09004 * 110.01700 * 306.53887 * 17 15 10 31 31 H 1.09009 * 110.48472 * 335.78092 * 18 17 15 32 32 H 1.08998 * 110.48587 * 98.41964 * 18 17 15 33 33 H 1.09001 * 110.71174 * 279.57284 * 19 18 17 34 34 H 1.08994 * 110.92744 * 156.29391 * 19 18 17 35 35 H 1.09005 * 110.48511 * 203.40999 * 20 19 18 36 36 H 1.08999 * 110.48529 * 80.76964 * 20 19 18 37 37 H 1.08993 * 110.03342 * 238.56716 * 21 17 15 38 38 H 1.09002 * 110.03196 * 359.95448 * 21 17 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6178 0.0000 4 1 2.4967 2.0464 -1.4001 5 1 1.4465 2.6527 0.7000 6 1 3.5467 1.4403 0.7002 7 6 2.0045 -1.1941 0.0005 8 1 1.4645 -2.1293 0.0005 9 6 3.5115 -1.1941 0.0011 10 6 4.0216 -2.6365 0.0010 11 1 3.6899 -3.1475 0.9048 12 7 3.5185 -3.3487 -1.1937 13 6 4.6071 -4.2728 -1.6024 14 6 5.8895 -3.4353 -1.3693 15 6 5.5596 -2.6492 -0.0745 16 1 5.9769 -3.1559 0.7957 17 6 6.0984 -1.2202 -0.1674 18 6 7.6273 -1.2442 -0.3723 19 6 8.1399 -0.0397 0.4569 20 6 7.2250 -0.0698 1.7064 21 6 5.8425 -0.4735 1.1534 22 1 -0.4850 0.8401 -0.0004 23 1 3.8745 -0.6800 0.8911 24 1 3.8752 -0.6803 -0.8888 25 1 2.6729 -3.8569 -0.9824 26 1 4.6105 -5.1643 -0.9753 27 1 4.5090 -4.5415 -2.6543 28 1 6.7515 -4.0844 -1.2153 29 1 6.0639 -2.7564 -2.2040 30 1 5.6193 -0.6937 -0.9929 31 1 8.0485 -2.1752 0.0072 32 1 7.8729 -1.1150 -1.4264 33 1 8.0098 0.8914 -0.0947 34 1 9.1837 -0.1772 0.7390 35 1 7.1778 0.9163 2.1685 36 1 7.5809 -0.8109 2.4220 37 1 5.2400 0.4159 0.9688 38 1 5.3337 -1.1288 1.8603 RHF calculation, no. of doubly occupied orbitals= 43 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000261244011.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:57:11 Heat of formation + Delta-G solvation = -11.376149 kcal Electronic energy + Delta-G solvation = -16367.228811 eV Core-core repulsion = 14015.622349 eV Total energy + Delta-G solvation = -2351.606462 eV No. of doubly occupied orbitals = 43 Molecular weight (most abundant/longest-lived isotopes) = 223.163 amu Computer time = 0.27 seconds Orbital eigenvalues (eV) -39.48092 -36.54741 -32.93724 -31.08873 -30.55843 -28.19919 -26.94943 -25.78295 -22.46668 -20.90244 -20.12930 -19.85701 -18.17642 -16.97655 -15.81966 -15.33703 -15.04672 -14.04156 -13.94601 -13.35152 -13.08647 -12.76691 -12.44633 -12.37609 -11.73970 -11.48078 -11.36901 -11.19950 -10.87577 -10.80475 -10.66450 -10.45696 -10.36188 -10.03734 -10.00844 -9.71565 -9.52896 -9.37666 -8.86119 -8.36513 -7.65271 -5.90677 -3.83940 3.38208 3.45193 3.45967 4.55690 4.82361 4.88204 4.93511 4.97572 5.27668 5.30598 5.41588 5.48346 5.69044 5.74347 5.85334 5.88322 5.89899 5.98898 6.00421 6.08424 6.11226 6.14980 6.22369 6.34459 6.38816 6.42333 6.53488 6.66051 6.76029 6.87032 6.88098 7.30996 7.46664 7.71740 7.98588 8.15321 8.69777 9.15346 9.73001 11.23606 Molecular weight = 223.16amu Principal moments of inertia in cm(-1) A = 0.021974 B = 0.011972 C = 0.008359 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1273.933381 B = 2338.150365 C = 3348.756599 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.911 5.911 2 C 0.061 3.939 3 Si 0.874 3.126 4 H -0.280 1.280 5 H -0.292 1.292 6 H -0.261 1.261 7 C -0.498 4.498 8 H 0.067 0.933 9 C -0.013 4.013 10 C 0.090 3.910 11 H 0.034 0.966 12 N -0.650 5.650 13 C 0.033 3.967 14 C -0.115 4.115 15 C -0.088 4.088 16 H 0.063 0.937 17 C -0.079 4.079 18 C -0.119 4.119 19 C -0.125 4.125 20 C -0.128 4.128 21 C -0.122 4.122 22 H 0.259 0.741 23 H 0.036 0.964 24 H 0.020 0.980 25 H 0.337 0.663 26 H 0.027 0.973 27 H 0.070 0.930 28 H 0.058 0.942 29 H 0.071 0.929 30 H 0.082 0.918 31 H 0.061 0.939 32 H 0.059 0.941 33 H 0.063 0.937 34 H 0.058 0.942 35 H 0.058 0.942 36 H 0.059 0.941 37 H 0.073 0.927 38 H 0.068 0.932 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 15.492 -3.771 0.493 15.952 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.551 5.551 2 C -0.138 4.138 3 Si 0.702 3.298 4 H -0.206 1.206 5 H -0.219 1.219 6 H -0.186 1.186 7 C -0.536 4.536 8 H 0.085 0.915 9 C -0.050 4.050 10 C -0.020 4.020 11 H 0.053 0.947 12 N -0.280 5.280 13 C -0.097 4.097 14 C -0.153 4.153 15 C -0.108 4.108 16 H 0.081 0.919 17 C -0.098 4.098 18 C -0.156 4.156 19 C -0.163 4.163 20 C -0.166 4.166 21 C -0.159 4.159 22 H 0.069 0.931 23 H 0.054 0.946 24 H 0.039 0.961 25 H 0.153 0.847 26 H 0.045 0.955 27 H 0.089 0.911 28 H 0.077 0.923 29 H 0.090 0.910 30 H 0.100 0.900 31 H 0.079 0.921 32 H 0.078 0.922 33 H 0.082 0.918 34 H 0.077 0.923 35 H 0.077 0.923 36 H 0.078 0.922 37 H 0.091 0.909 38 H 0.087 0.913 Dipole moment (debyes) X Y Z Total from point charges 15.454 -3.124 0.011 15.767 hybrid contribution 0.155 0.149 0.648 0.683 sum 15.609 -2.975 0.659 15.904 Atomic orbital electron populations 1.69922 1.06253 1.26433 1.52517 1.24993 0.94643 0.98906 0.95250 0.86900 0.80438 0.84062 0.78370 1.20564 1.21862 1.18565 1.21101 0.89752 0.93980 1.48806 0.91494 1.20091 0.96891 0.91103 0.96957 1.22147 0.91136 0.98120 0.90554 0.94736 1.62978 1.04342 1.26205 1.34461 1.23015 0.92608 0.94123 0.99950 1.22571 0.96425 0.98169 0.98155 1.22258 0.96385 0.95249 0.96863 0.91853 1.21837 0.94028 0.95339 0.98559 1.22453 0.96015 0.97820 0.99325 1.22493 0.98324 0.98641 0.96809 1.22445 0.96294 1.00638 0.97224 1.22531 0.95780 1.00843 0.96741 0.93108 0.94618 0.96149 0.84704 0.95464 0.91113 0.92337 0.91036 0.89984 0.92056 0.92219 0.91846 0.92347 0.92313 0.92234 0.90878 0.91297 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.91 -28.65 13.96 55.43 0.77 -27.88 16 2 C 0.06 1.82 5.47 -17.82 -0.10 1.72 16 3 Si 0.87 22.01 27.47 -169.99 -4.67 17.34 16 4 H -0.28 -7.05 7.11 56.52 0.40 -6.65 16 5 H -0.29 -7.37 7.11 56.52 0.40 -6.97 16 6 H -0.26 -6.09 5.13 56.52 0.29 -5.80 16 7 C -0.50 -14.18 9.29 -34.44 -0.32 -14.50 16 8 H 0.07 2.05 7.67 -52.49 -0.40 1.65 16 9 C -0.01 -0.31 2.34 -27.89 -0.07 -0.38 16 10 C 0.09 1.79 3.06 -66.64 -0.20 1.59 16 11 H 0.03 0.71 8.14 -51.93 -0.42 0.29 16 12 N -0.65 -12.71 6.68 -103.14 -0.69 -13.40 16 13 C 0.03 0.51 7.55 -1.90 -0.01 0.49 16 14 C -0.12 -1.68 5.96 -24.64 -0.15 -1.82 16 15 C -0.09 -1.43 2.22 -89.03 -0.20 -1.63 16 16 H 0.06 0.96 8.14 -51.93 -0.42 0.54 16 17 C -0.08 -1.26 1.81 -89.50 -0.16 -1.43 16 18 C -0.12 -1.54 5.70 -25.03 -0.14 -1.68 16 19 C -0.13 -1.53 6.91 -24.70 -0.17 -1.71 16 20 C -0.13 -1.72 6.83 -25.07 -0.17 -1.89 16 21 C -0.12 -2.00 4.28 -25.61 -0.11 -2.11 16 22 H 0.26 7.69 8.31 -40.82 -0.34 7.36 16 23 H 0.04 0.83 3.41 -51.93 -0.18 0.65 16 24 H 0.02 0.50 5.80 -51.93 -0.30 0.20 16 25 H 0.34 6.59 8.67 -39.29 -0.34 6.25 16 26 H 0.03 0.39 8.14 -51.93 -0.42 -0.03 16 27 H 0.07 1.02 8.14 -51.93 -0.42 0.60 16 28 H 0.06 0.72 8.14 -51.93 -0.42 0.30 16 29 H 0.07 1.07 7.87 -51.93 -0.41 0.66 16 30 H 0.08 1.50 6.33 -51.93 -0.33 1.17 16 31 H 0.06 0.74 7.85 -51.92 -0.41 0.34 16 32 H 0.06 0.73 8.14 -51.93 -0.42 0.31 16 33 H 0.06 0.78 8.14 -51.93 -0.42 0.36 16 34 H 0.06 0.62 8.14 -51.93 -0.42 0.20 16 35 H 0.06 0.75 8.14 -51.93 -0.42 0.33 16 36 H 0.06 0.73 8.14 -51.93 -0.42 0.31 16 37 H 0.07 1.37 5.75 -51.93 -0.30 1.07 16 38 H 0.07 1.17 6.80 -51.93 -0.35 0.82 16 LS Contribution 278.74 15.07 4.20 4.20 Total: -1.00 -30.45 278.74 -8.68 -39.13 By element: Atomic # 1 Polarization: 10.43 SS G_CDS: -6.49 Total: 3.94 kcal Atomic # 6 Polarization: -21.54 SS G_CDS: -1.80 Total: -23.34 kcal Atomic # 7 Polarization: -41.36 SS G_CDS: 0.08 Total: -41.28 kcal Atomic # 14 Polarization: 22.01 SS G_CDS: -4.67 Total: 17.34 kcal Total LS contribution 4.20 Total: 4.20 kcal Total: -30.45 -8.68 -39.13 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000261244011.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 27.753 kcal (2) G-P(sol) polarization free energy of solvation -30.451 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -2.698 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.678 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.129 kcal (6) G-S(sol) free energy of system = (1) + (5) -11.376 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.27 seconds