Wall clock time and date at job start Mon Mar 30 2020 02:57:10 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31513 * 1 3 3 Si 1.86809 * 119.99938 * 2 1 4 4 H 1.48503 * 109.47037 * 269.99617 * 3 2 1 5 5 H 1.48500 * 109.46988 * 29.99774 * 3 2 1 6 6 H 1.48505 * 109.47005 * 149.99601 * 3 2 1 7 7 C 1.37877 * 119.99992 * 179.97438 * 2 1 3 8 8 H 1.07992 * 119.99844 * 0.02562 * 7 2 1 9 9 C 1.50701 * 120.00011 * 180.02562 * 7 2 1 10 10 C 1.52995 * 109.47348 * 180.02562 * 9 7 2 11 11 H 1.08997 * 109.90473 * 298.09489 * 10 9 7 12 12 N 1.47907 * 109.91533 * 59.19181 * 10 9 7 13 13 C 1.48530 * 105.81675 * 144.68287 * 12 10 9 14 14 C 1.54930 * 103.23346 * 320.79294 * 13 12 10 15 15 C 1.53991 * 109.92084 * 176.98684 * 10 9 7 16 16 H 1.09003 * 110.30990 * 120.50457 * 15 10 9 17 17 C 1.53003 * 110.30670 * 358.34120 * 15 10 9 18 18 C 1.54269 * 110.03298 * 185.15026 * 17 15 10 19 19 C 1.54963 * 104.16161 * 217.13901 * 18 17 15 20 20 C 1.54891 * 102.77594 * 37.88156 * 19 18 17 21 21 C 1.53869 * 110.03288 * 67.92896 * 17 15 10 22 22 H 0.97005 * 119.99664 * 0.02562 * 1 2 3 23 23 H 1.09000 * 109.47243 * 59.99922 * 9 7 2 24 24 H 1.09005 * 109.46986 * 300.00701 * 9 7 2 25 25 H 1.00897 * 111.00055 * 265.19891 * 12 10 9 26 26 H 1.08999 * 110.66652 * 79.23316 * 13 12 10 27 27 H 1.09006 * 110.66378 * 202.35776 * 13 12 10 28 28 H 1.09002 * 110.72820 * 155.76893 * 14 13 12 29 29 H 1.08996 * 110.72714 * 278.88520 * 14 13 12 30 30 H 1.09004 * 110.01700 * 306.53887 * 17 15 10 31 31 H 1.09009 * 110.48472 * 335.78092 * 18 17 15 32 32 H 1.08998 * 110.48587 * 98.41964 * 18 17 15 33 33 H 1.09001 * 110.71174 * 279.57284 * 19 18 17 34 34 H 1.08994 * 110.92744 * 156.29391 * 19 18 17 35 35 H 1.09005 * 110.48511 * 203.40999 * 20 19 18 36 36 H 1.08999 * 110.48529 * 80.76964 * 20 19 18 37 37 H 1.08993 * 110.03342 * 238.56716 * 21 17 15 38 38 H 1.09002 * 110.03196 * 359.95448 * 21 17 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6178 0.0000 4 1 2.4967 2.0464 -1.4001 5 1 1.4465 2.6527 0.7000 6 1 3.5467 1.4403 0.7002 7 6 2.0045 -1.1941 0.0005 8 1 1.4645 -2.1293 0.0005 9 6 3.5115 -1.1941 0.0011 10 6 4.0216 -2.6365 0.0010 11 1 3.6899 -3.1475 0.9048 12 7 3.5185 -3.3487 -1.1937 13 6 4.6071 -4.2728 -1.6024 14 6 5.8895 -3.4353 -1.3693 15 6 5.5596 -2.6492 -0.0745 16 1 5.9769 -3.1559 0.7957 17 6 6.0984 -1.2202 -0.1674 18 6 7.6273 -1.2442 -0.3723 19 6 8.1399 -0.0397 0.4569 20 6 7.2250 -0.0698 1.7064 21 6 5.8425 -0.4735 1.1534 22 1 -0.4850 0.8401 -0.0004 23 1 3.8745 -0.6800 0.8911 24 1 3.8752 -0.6803 -0.8888 25 1 2.6729 -3.8569 -0.9824 26 1 4.6105 -5.1643 -0.9753 27 1 4.5090 -4.5415 -2.6543 28 1 6.7515 -4.0844 -1.2153 29 1 6.0639 -2.7564 -2.2040 30 1 5.6193 -0.6937 -0.9929 31 1 8.0485 -2.1752 0.0072 32 1 7.8729 -1.1150 -1.4264 33 1 8.0098 0.8914 -0.0947 34 1 9.1837 -0.1772 0.7390 35 1 7.1778 0.9163 2.1685 36 1 7.5809 -0.8109 2.4220 37 1 5.2400 0.4159 0.9688 38 1 5.3337 -1.1288 1.8603 RHF calculation, no. of doubly occupied orbitals= 43 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000261244011.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:57:10 Heat of formation + Delta-G solvation = -31.178771 kcal Electronic energy + Delta-G solvation = -16368.087517 eV Core-core repulsion = 14015.622349 eV Total energy + Delta-G solvation = -2352.465168 eV No. of doubly occupied orbitals = 43 Molecular weight (most abundant/longest-lived isotopes) = 223.163 amu Computer time = 0.30 seconds Orbital eigenvalues (eV) -40.80554 -37.77447 -35.03183 -32.70981 -32.00698 -29.36913 -28.53446 -27.19053 -24.28656 -22.14180 -21.39682 -21.06599 -19.63465 -18.95432 -17.43113 -16.61515 -16.44024 -15.82542 -15.21216 -14.96248 -14.59401 -14.12411 -14.10715 -13.62363 -13.18715 -13.09848 -13.05372 -12.58745 -12.38811 -12.05066 -11.90753 -11.79022 -11.69360 -11.46548 -11.35079 -11.19359 -11.14653 -10.94062 -10.83091 -10.56978 -9.17111 -8.20813 -6.18408 1.34970 1.35988 1.47295 2.40264 3.14551 3.53650 3.67348 3.75724 3.85611 4.04011 4.11469 4.29064 4.43281 4.61097 4.65953 4.72992 4.77647 4.80797 4.85675 4.91525 4.94011 5.06790 5.07465 5.14433 5.16747 5.20117 5.31244 5.35397 5.45962 5.53993 5.55485 5.59322 5.71565 5.78610 6.20797 6.43605 6.59014 6.87957 7.42150 8.96598 Molecular weight = 223.16amu Principal moments of inertia in cm(-1) A = 0.021974 B = 0.011972 C = 0.008359 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1273.933381 B = 2338.150365 C = 3348.756599 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.960 5.960 2 C -0.003 4.003 3 Si 0.939 3.061 4 H -0.277 1.277 5 H -0.290 1.290 6 H -0.234 1.234 7 C -0.501 4.501 8 H 0.029 0.971 9 C -0.003 4.003 10 C 0.087 3.913 11 H 0.021 0.979 12 N -0.677 5.677 13 C 0.033 3.967 14 C -0.107 4.107 15 C -0.081 4.081 16 H 0.081 0.919 17 C -0.081 4.081 18 C -0.110 4.110 19 C -0.122 4.122 20 C -0.124 4.124 21 C -0.127 4.127 22 H 0.260 0.740 23 H 0.044 0.956 24 H 0.013 0.987 25 H 0.329 0.671 26 H 0.044 0.956 27 H 0.081 0.919 28 H 0.093 0.907 29 H 0.067 0.933 30 H 0.053 0.947 31 H 0.078 0.922 32 H 0.068 0.932 33 H 0.059 0.941 34 H 0.083 0.917 35 H 0.062 0.938 36 H 0.074 0.926 37 H 0.044 0.956 38 H 0.056 0.944 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 19.096 -3.854 0.556 19.489 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.603 5.603 2 C -0.197 4.197 3 Si 0.764 3.236 4 H -0.202 1.202 5 H -0.216 1.216 6 H -0.158 1.158 7 C -0.539 4.539 8 H 0.047 0.953 9 C -0.040 4.040 10 C -0.022 4.022 11 H 0.039 0.961 12 N -0.306 5.306 13 C -0.096 4.096 14 C -0.145 4.145 15 C -0.100 4.100 16 H 0.099 0.901 17 C -0.099 4.099 18 C -0.148 4.148 19 C -0.159 4.159 20 C -0.161 4.161 21 C -0.164 4.164 22 H 0.069 0.931 23 H 0.061 0.939 24 H 0.031 0.969 25 H 0.144 0.856 26 H 0.062 0.938 27 H 0.100 0.900 28 H 0.111 0.889 29 H 0.085 0.915 30 H 0.072 0.928 31 H 0.096 0.904 32 H 0.086 0.914 33 H 0.078 0.922 34 H 0.101 0.899 35 H 0.081 0.919 36 H 0.093 0.907 37 H 0.063 0.937 38 H 0.075 0.925 Dipole moment (debyes) X Y Z Total from point charges 19.088 -3.225 0.071 19.359 hybrid contribution -1.060 0.080 0.617 1.229 sum 18.028 -3.145 0.689 18.313 Atomic orbital electron populations 1.70086 1.08203 1.27459 1.54517 1.25926 0.95484 1.03129 0.95210 0.85855 0.80111 0.78952 0.78713 1.20249 1.21625 1.15769 1.21499 0.92488 0.92492 1.47460 0.95272 1.19998 0.93294 0.94017 0.96710 1.22073 0.94198 0.95592 0.90366 0.96113 1.62926 1.05534 1.27898 1.34234 1.23135 0.91594 0.94118 1.00784 1.22578 0.96984 0.98112 0.96835 1.22210 0.93016 0.96128 0.98651 0.90100 1.21795 0.96454 0.94553 0.97131 1.22405 0.93132 0.99022 1.00216 1.22502 0.99374 0.98191 0.95859 1.22421 0.94389 1.01251 0.98058 1.22486 0.97425 0.99449 0.97087 0.93111 0.93860 0.96928 0.85579 0.93813 0.90050 0.88876 0.91459 0.92817 0.90354 0.91370 0.92187 0.89859 0.91927 0.90736 0.93704 0.92478 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.96 -62.66 13.96 21.45 0.30 -62.36 16 2 C 0.00 -0.17 5.47 84.65 0.46 0.29 16 3 Si 0.94 46.20 27.47 68.60 1.88 48.08 16 4 H -0.28 -13.43 7.11 99.48 0.71 -12.72 16 5 H -0.29 -14.09 7.11 99.48 0.71 -13.39 16 6 H -0.23 -10.42 5.13 99.48 0.51 -9.91 16 7 C -0.50 -29.61 9.29 25.60 0.24 -29.37 16 8 H 0.03 1.88 7.67 -2.91 -0.02 1.86 16 9 C 0.00 -0.14 2.34 29.85 0.07 -0.07 16 10 C 0.09 3.49 3.06 45.05 0.14 3.63 16 11 H 0.02 0.87 8.14 -2.39 -0.02 0.85 16 12 N -0.68 -26.58 6.68 -480.22 -3.21 -29.79 16 13 C 0.03 0.94 7.55 86.65 0.65 1.59 16 14 C -0.11 -2.77 5.96 31.95 0.19 -2.58 16 15 C -0.08 -2.44 2.22 -9.76 -0.02 -2.46 16 16 H 0.08 2.19 8.14 -2.39 -0.02 2.17 16 17 C -0.08 -2.41 1.81 -10.07 -0.02 -2.42 16 18 C -0.11 -2.42 5.70 31.70 0.18 -2.24 16 19 C -0.12 -2.50 6.91 31.91 0.22 -2.28 16 20 C -0.12 -2.91 6.83 31.67 0.22 -2.70 16 21 C -0.13 -3.97 4.28 31.32 0.13 -3.83 16 22 H 0.26 15.98 8.31 -92.70 -0.77 15.21 16 23 H 0.04 2.01 3.41 -2.39 -0.01 2.00 16 24 H 0.01 0.62 5.80 -2.38 -0.01 0.61 16 25 H 0.33 13.37 8.67 -89.70 -0.78 12.59 16 26 H 0.04 1.13 8.14 -2.39 -0.02 1.11 16 27 H 0.08 2.17 8.14 -2.38 -0.02 2.15 16 28 H 0.09 1.81 8.14 -2.39 -0.02 1.79 16 29 H 0.07 1.81 7.87 -2.39 -0.02 1.79 16 30 H 0.05 1.91 6.33 -2.38 -0.02 1.89 16 31 H 0.08 1.49 7.85 -2.38 -0.02 1.47 16 32 H 0.07 1.40 8.14 -2.39 -0.02 1.38 16 33 H 0.06 1.28 8.14 -2.39 -0.02 1.26 16 34 H 0.08 1.34 8.14 -2.39 -0.02 1.32 16 35 H 0.06 1.42 8.14 -2.38 -0.02 1.40 16 36 H 0.07 1.55 8.14 -2.39 -0.02 1.53 16 37 H 0.04 1.63 5.75 -2.39 -0.01 1.61 16 38 H 0.06 1.88 6.80 -2.39 -0.02 1.86 16 Total: -1.00 -68.15 278.74 1.50 -66.65 By element: Atomic # 1 Polarization: 19.79 SS G_CDS: 0.05 Total: 19.85 kcal Atomic # 6 Polarization: -44.90 SS G_CDS: 2.46 Total: -42.44 kcal Atomic # 7 Polarization: -89.24 SS G_CDS: -2.91 Total: -92.15 kcal Atomic # 14 Polarization: 46.20 SS G_CDS: 1.88 Total: 48.08 kcal Total: -68.15 1.50 -66.65 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000261244011.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 35.471 kcal (2) G-P(sol) polarization free energy of solvation -68.146 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -32.675 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.496 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.650 kcal (6) G-S(sol) free energy of system = (1) + (5) -31.179 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.30 seconds