Wall clock time and date at job start Mon Mar 30 2020 02:57:13 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31508 * 1 3 3 Si 1.86807 * 120.00004 * 2 1 4 4 H 1.48495 * 109.46915 * 269.99750 * 3 2 1 5 5 H 1.48497 * 109.47099 * 29.99807 * 3 2 1 6 6 H 1.48496 * 109.47151 * 149.99821 * 3 2 1 7 7 C 1.37881 * 120.00430 * 179.97438 * 2 1 3 8 8 H 1.08002 * 119.99271 * 0.02562 * 7 2 1 9 9 C 1.50694 * 120.00360 * 180.02562 * 7 2 1 10 10 C 1.52999 * 109.47372 * 180.02562 * 9 7 2 11 11 H 1.09006 * 110.36959 * 55.05452 * 10 9 7 12 12 N 1.48851 * 110.49132 * 292.67710 * 10 9 7 13 13 C 1.48562 * 104.07855 * 201.70315 * 12 10 9 14 14 C 1.54381 * 104.69933 * 39.46733 * 13 12 10 15 15 C 1.54263 * 105.05711 * 336.08996 * 14 13 12 16 16 H 1.09004 * 110.32451 * 118.89659 * 15 14 13 17 17 C 1.53001 * 110.32235 * 241.00081 * 15 14 13 18 18 C 1.54257 * 110.03397 * 303.36666 * 17 15 14 19 19 C 1.54972 * 104.16015 * 217.13708 * 18 17 15 20 20 C 1.54879 * 102.77677 * 37.88701 * 19 18 17 21 21 C 1.53877 * 110.03042 * 186.14719 * 17 15 14 22 22 H 0.97001 * 120.00232 * 0.02562 * 1 2 3 23 23 H 1.08996 * 109.47331 * 60.00046 * 9 7 2 24 24 H 1.09010 * 109.46991 * 300.00036 * 9 7 2 25 25 H 1.00906 * 111.13949 * 82.16104 * 12 10 9 26 26 H 1.09001 * 110.41010 * 280.62812 * 13 12 10 27 27 H 1.08994 * 110.41627 * 158.30259 * 13 12 10 28 28 H 1.09000 * 110.32682 * 94.98172 * 14 13 12 29 29 H 1.08996 * 110.32340 * 217.10017 * 14 13 12 30 30 H 1.09004 * 110.01831 * 64.76232 * 17 15 14 31 31 H 1.09005 * 110.48935 * 335.78371 * 18 17 15 32 32 H 1.09001 * 110.49118 * 98.42764 * 18 17 15 33 33 H 1.09004 * 110.71829 * 279.57445 * 19 18 17 34 34 H 1.09001 * 110.92445 * 156.29549 * 19 18 17 35 35 H 1.08997 * 110.49034 * 203.40616 * 20 19 18 36 36 H 1.09000 * 110.49002 * 80.76163 * 20 19 18 37 37 H 1.09003 * 110.03319 * 238.56731 * 21 17 15 38 38 H 1.08996 * 110.03774 * 0.02562 * 21 17 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 2.4966 2.0464 -1.4000 5 1 1.4466 2.6527 0.7000 6 1 3.5466 1.4403 0.7001 7 6 2.0046 -1.1940 0.0005 8 1 1.4645 -2.1293 0.0005 9 6 3.5115 -1.1940 0.0011 10 6 4.0216 -2.6365 0.0010 11 1 3.5966 -3.1891 -0.8369 12 7 3.6880 -3.3072 1.2872 13 6 4.6591 -4.4283 1.3727 14 6 5.9832 -3.8411 0.8386 15 6 5.5638 -2.6623 -0.0638 16 1 5.9744 -1.7279 0.3187 17 6 6.0336 -2.8996 -1.5004 18 6 7.5607 -3.1154 -1.5282 19 6 8.0193 -2.4127 -2.8311 20 6 7.1128 -1.1579 -2.8808 21 6 5.7486 -1.6557 -2.3603 22 1 -0.4850 0.8400 -0.0004 23 1 3.8745 -0.6800 0.8911 24 1 3.8752 -0.6803 -0.8889 25 1 2.7391 -3.6504 1.2833 26 1 4.3339 -5.2613 0.7495 27 1 4.7766 -4.7516 2.4070 28 1 6.5998 -3.4851 1.6640 29 1 6.5230 -4.5900 0.2591 30 1 5.5260 -3.7680 -1.9204 31 1 8.0276 -2.6506 -0.6597 32 1 7.7952 -4.1792 -1.5648 33 1 7.8425 -3.0515 -3.6965 34 1 9.0698 -2.1282 -2.7710 35 1 7.0209 -0.7939 -3.9041 36 1 7.5069 -0.3765 -2.2310 37 1 5.1035 -1.9207 -3.1981 38 1 5.2760 -0.8829 -1.7542 RHF calculation, no. of doubly occupied orbitals= 43 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000261244013.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:57:13 Heat of formation + Delta-G solvation = -25.803314 kcal Electronic energy + Delta-G solvation = -16079.989965 eV Core-core repulsion = 13727.757894 eV Total energy + Delta-G solvation = -2352.232071 eV No. of doubly occupied orbitals = 43 Molecular weight (most abundant/longest-lived isotopes) = 223.163 amu Computer time = 0.27 seconds Orbital eigenvalues (eV) -39.29627 -36.65277 -32.96337 -30.90781 -30.67411 -28.37509 -27.27195 -25.63982 -22.33268 -21.09273 -20.06222 -19.33487 -19.13204 -16.63419 -15.86572 -15.60666 -14.78586 -14.38148 -13.97071 -13.50227 -13.14984 -12.78975 -12.48599 -12.12846 -11.87508 -11.51484 -11.48094 -11.23887 -10.89996 -10.82315 -10.73173 -10.59114 -10.45427 -10.17926 -10.07373 -9.87744 -9.71167 -9.37539 -8.99354 -8.45425 -7.79616 -5.97325 -3.92834 3.34966 3.42867 3.47911 4.51757 4.72758 4.75559 4.82931 5.04405 5.18793 5.31031 5.37652 5.48741 5.58887 5.65011 5.76613 5.79052 5.86032 5.89442 5.95536 6.00411 6.07887 6.12722 6.21006 6.29348 6.32993 6.39471 6.44580 6.58263 6.61025 6.76166 6.90407 7.23053 7.37745 7.67282 7.89270 8.11283 8.60339 9.06281 9.65933 11.16472 Molecular weight = 223.16amu Principal moments of inertia in cm(-1) A = 0.024545 B = 0.009571 C = 0.007432 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1140.507891 B = 2924.865994 C = 3766.838490 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.907 5.907 2 C 0.065 3.935 3 Si 0.877 3.123 4 H -0.279 1.279 5 H -0.289 1.289 6 H -0.264 1.264 7 C -0.507 4.507 8 H 0.067 0.933 9 C -0.004 4.004 10 C 0.091 3.909 11 H 0.039 0.961 12 N -0.653 5.653 13 C 0.032 3.968 14 C -0.118 4.118 15 C -0.086 4.086 16 H 0.075 0.925 17 C -0.079 4.079 18 C -0.117 4.117 19 C -0.125 4.125 20 C -0.125 4.125 21 C -0.132 4.132 22 H 0.261 0.739 23 H 0.024 0.976 24 H 0.019 0.981 25 H 0.340 0.660 26 H 0.028 0.972 27 H 0.069 0.931 28 H 0.063 0.937 29 H 0.062 0.938 30 H 0.065 0.935 31 H 0.065 0.935 32 H 0.059 0.941 33 H 0.062 0.938 34 H 0.059 0.941 35 H 0.059 0.941 36 H 0.062 0.938 37 H 0.061 0.939 38 H 0.082 0.918 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 15.058 -6.197 -3.193 16.593 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.547 5.547 2 C -0.135 4.135 3 Si 0.704 3.296 4 H -0.205 1.205 5 H -0.215 1.215 6 H -0.189 1.189 7 C -0.546 4.546 8 H 0.085 0.915 9 C -0.041 4.041 10 C -0.019 4.019 11 H 0.057 0.943 12 N -0.282 5.282 13 C -0.098 4.098 14 C -0.156 4.156 15 C -0.105 4.105 16 H 0.093 0.907 17 C -0.098 4.098 18 C -0.155 4.155 19 C -0.163 4.163 20 C -0.162 4.162 21 C -0.169 4.169 22 H 0.071 0.929 23 H 0.042 0.958 24 H 0.037 0.963 25 H 0.156 0.844 26 H 0.046 0.954 27 H 0.087 0.913 28 H 0.081 0.919 29 H 0.080 0.920 30 H 0.084 0.916 31 H 0.084 0.916 32 H 0.077 0.923 33 H 0.081 0.919 34 H 0.078 0.922 35 H 0.078 0.922 36 H 0.081 0.919 37 H 0.080 0.920 38 H 0.100 0.900 Dipole moment (debyes) X Y Z Total from point charges 15.221 -5.601 -2.714 16.444 hybrid contribution -0.123 0.219 -0.678 0.723 sum 15.098 -5.382 -3.392 16.383 Atomic orbital electron populations 1.69912 1.06271 1.26675 1.51798 1.24993 0.94671 0.99035 0.94824 0.86821 0.80565 0.83865 0.78324 1.20460 1.21536 1.18902 1.21054 0.89499 0.94107 1.49903 0.91465 1.19682 0.97032 0.90993 0.96382 1.22494 0.91794 0.97907 0.89662 0.94284 1.63702 1.06575 1.22733 1.35202 1.22874 0.93692 0.93465 0.99815 1.22355 0.96904 0.97549 0.98830 1.22127 0.96574 0.98274 0.93515 0.90685 1.21799 0.94911 0.97966 0.95148 1.22449 0.95752 0.99691 0.97613 1.22503 0.98717 0.97149 0.97898 1.22366 0.95893 0.97395 1.00561 1.22417 0.96720 0.98218 0.99526 0.92927 0.95805 0.96274 0.84371 0.95400 0.91291 0.91863 0.91971 0.91622 0.91590 0.92250 0.91925 0.92175 0.92173 0.91917 0.91997 0.89977 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.91 -28.25 13.96 55.43 0.77 -27.48 16 2 C 0.07 1.92 5.47 -17.82 -0.10 1.82 16 3 Si 0.88 22.11 27.47 -169.99 -4.67 17.44 16 4 H -0.28 -6.85 7.11 56.52 0.40 -6.45 16 5 H -0.29 -7.28 7.11 56.52 0.40 -6.87 16 6 H -0.26 -6.46 6.54 56.52 0.37 -6.09 16 7 C -0.51 -14.42 9.44 -34.44 -0.33 -14.75 16 8 H 0.07 2.04 7.85 -52.49 -0.41 1.63 16 9 C 0.00 -0.09 3.51 -27.89 -0.10 -0.18 16 10 C 0.09 1.82 2.39 -65.91 -0.16 1.66 16 11 H 0.04 0.82 7.77 -51.93 -0.40 0.41 16 12 N -0.65 -12.73 7.13 -102.54 -0.73 -13.46 16 13 C 0.03 0.49 7.46 -2.18 -0.02 0.47 16 14 C -0.12 -1.70 6.15 -25.35 -0.16 -1.86 16 15 C -0.09 -1.41 1.89 -89.24 -0.17 -1.58 16 16 H 0.07 1.31 7.86 -51.93 -0.41 0.90 16 17 C -0.08 -1.14 2.31 -89.50 -0.21 -1.35 16 18 C -0.12 -1.39 5.24 -25.03 -0.13 -1.53 16 19 C -0.13 -1.39 6.91 -24.70 -0.17 -1.56 16 20 C -0.12 -1.56 6.83 -25.08 -0.17 -1.74 16 21 C -0.13 -1.98 6.14 -25.61 -0.16 -2.14 16 22 H 0.26 7.65 8.31 -40.82 -0.34 7.31 16 23 H 0.02 0.60 7.20 -51.93 -0.37 0.23 16 24 H 0.02 0.45 4.97 -51.92 -0.26 0.19 16 25 H 0.34 6.79 8.73 -39.29 -0.34 6.45 16 26 H 0.03 0.41 8.14 -51.93 -0.42 -0.02 16 27 H 0.07 0.98 8.14 -51.93 -0.42 0.56 16 28 H 0.06 0.87 8.14 -51.93 -0.42 0.45 16 29 H 0.06 0.78 6.92 -51.93 -0.36 0.42 16 30 H 0.07 0.96 8.01 -51.93 -0.42 0.54 16 31 H 0.07 0.78 7.80 -51.93 -0.40 0.38 16 32 H 0.06 0.64 7.95 -51.93 -0.41 0.23 16 33 H 0.06 0.66 8.14 -51.93 -0.42 0.24 16 34 H 0.06 0.59 8.14 -51.93 -0.42 0.17 16 35 H 0.06 0.70 8.14 -51.93 -0.42 0.28 16 36 H 0.06 0.78 8.14 -51.93 -0.42 0.36 16 37 H 0.06 0.93 8.14 -51.93 -0.42 0.51 16 38 H 0.08 1.43 4.93 -51.93 -0.26 1.17 16 LS Contribution 286.48 15.07 4.32 4.32 Total: -1.00 -30.14 286.48 -8.76 -38.91 By element: Atomic # 1 Polarization: 9.59 SS G_CDS: -6.60 Total: 2.99 kcal Atomic # 6 Polarization: -20.86 SS G_CDS: -1.86 Total: -22.71 kcal Atomic # 7 Polarization: -40.98 SS G_CDS: 0.04 Total: -40.94 kcal Atomic # 14 Polarization: 22.11 SS G_CDS: -4.67 Total: 17.44 kcal Total LS contribution 4.32 Total: 4.32 kcal Total: -30.14 -8.76 -38.91 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000261244013.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 13.102 kcal (2) G-P(sol) polarization free energy of solvation -30.143 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -17.041 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.762 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.905 kcal (6) G-S(sol) free energy of system = (1) + (5) -25.803 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.27 seconds