Wall clock time and date at job start Mon Mar 30 2020 02:57:12 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31508 * 1 3 3 Si 1.86807 * 120.00004 * 2 1 4 4 H 1.48495 * 109.46915 * 269.99750 * 3 2 1 5 5 H 1.48497 * 109.47099 * 29.99807 * 3 2 1 6 6 H 1.48496 * 109.47151 * 149.99821 * 3 2 1 7 7 C 1.37881 * 120.00430 * 179.97438 * 2 1 3 8 8 H 1.08002 * 119.99271 * 0.02562 * 7 2 1 9 9 C 1.50694 * 120.00360 * 180.02562 * 7 2 1 10 10 C 1.52999 * 109.47372 * 180.02562 * 9 7 2 11 11 H 1.09006 * 110.36959 * 55.05452 * 10 9 7 12 12 N 1.48851 * 110.49132 * 292.67710 * 10 9 7 13 13 C 1.48562 * 104.07855 * 201.70315 * 12 10 9 14 14 C 1.54381 * 104.69933 * 39.46733 * 13 12 10 15 15 C 1.54263 * 105.05711 * 336.08996 * 14 13 12 16 16 H 1.09004 * 110.32451 * 118.89659 * 15 14 13 17 17 C 1.53001 * 110.32235 * 241.00081 * 15 14 13 18 18 C 1.54257 * 110.03397 * 303.36666 * 17 15 14 19 19 C 1.54972 * 104.16015 * 217.13708 * 18 17 15 20 20 C 1.54879 * 102.77677 * 37.88701 * 19 18 17 21 21 C 1.53877 * 110.03042 * 186.14719 * 17 15 14 22 22 H 0.97001 * 120.00232 * 0.02562 * 1 2 3 23 23 H 1.08996 * 109.47331 * 60.00046 * 9 7 2 24 24 H 1.09010 * 109.46991 * 300.00036 * 9 7 2 25 25 H 1.00906 * 111.13949 * 82.16104 * 12 10 9 26 26 H 1.09001 * 110.41010 * 280.62812 * 13 12 10 27 27 H 1.08994 * 110.41627 * 158.30259 * 13 12 10 28 28 H 1.09000 * 110.32682 * 94.98172 * 14 13 12 29 29 H 1.08996 * 110.32340 * 217.10017 * 14 13 12 30 30 H 1.09004 * 110.01831 * 64.76232 * 17 15 14 31 31 H 1.09005 * 110.48935 * 335.78371 * 18 17 15 32 32 H 1.09001 * 110.49118 * 98.42764 * 18 17 15 33 33 H 1.09004 * 110.71829 * 279.57445 * 19 18 17 34 34 H 1.09001 * 110.92445 * 156.29549 * 19 18 17 35 35 H 1.08997 * 110.49034 * 203.40616 * 20 19 18 36 36 H 1.09000 * 110.49002 * 80.76163 * 20 19 18 37 37 H 1.09003 * 110.03319 * 238.56731 * 21 17 15 38 38 H 1.08996 * 110.03774 * 0.02562 * 21 17 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 2.4966 2.0464 -1.4000 5 1 1.4466 2.6527 0.7000 6 1 3.5466 1.4403 0.7001 7 6 2.0046 -1.1940 0.0005 8 1 1.4645 -2.1293 0.0005 9 6 3.5115 -1.1940 0.0011 10 6 4.0216 -2.6365 0.0010 11 1 3.5966 -3.1891 -0.8369 12 7 3.6880 -3.3072 1.2872 13 6 4.6591 -4.4283 1.3727 14 6 5.9832 -3.8411 0.8386 15 6 5.5638 -2.6623 -0.0638 16 1 5.9744 -1.7279 0.3187 17 6 6.0336 -2.8996 -1.5004 18 6 7.5607 -3.1154 -1.5282 19 6 8.0193 -2.4127 -2.8311 20 6 7.1128 -1.1579 -2.8808 21 6 5.7486 -1.6557 -2.3603 22 1 -0.4850 0.8400 -0.0004 23 1 3.8745 -0.6800 0.8911 24 1 3.8752 -0.6803 -0.8889 25 1 2.7391 -3.6504 1.2833 26 1 4.3339 -5.2613 0.7495 27 1 4.7766 -4.7516 2.4070 28 1 6.5998 -3.4851 1.6640 29 1 6.5230 -4.5900 0.2591 30 1 5.5260 -3.7680 -1.9204 31 1 8.0276 -2.6506 -0.6597 32 1 7.7952 -4.1792 -1.5648 33 1 7.8425 -3.0515 -3.6965 34 1 9.0698 -2.1282 -2.7710 35 1 7.0209 -0.7939 -3.9041 36 1 7.5069 -0.3765 -2.2310 37 1 5.1035 -1.9207 -3.1981 38 1 5.2760 -0.8829 -1.7542 RHF calculation, no. of doubly occupied orbitals= 43 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000261244013.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:57:12 Heat of formation + Delta-G solvation = -45.065412 kcal Electronic energy + Delta-G solvation = -16080.825232 eV Core-core repulsion = 13727.757894 eV Total energy + Delta-G solvation = -2353.067338 eV No. of doubly occupied orbitals = 43 Molecular weight (most abundant/longest-lived isotopes) = 223.163 amu Computer time = 0.32 seconds Orbital eigenvalues (eV) -40.56815 -37.85533 -35.08348 -32.52536 -32.12540 -29.49417 -28.67030 -27.15438 -24.12314 -22.25557 -21.19412 -20.85029 -20.40121 -18.72797 -17.29147 -16.78715 -16.33027 -15.84937 -15.44112 -14.99986 -14.59031 -14.18603 -13.97409 -13.54467 -13.34784 -13.28407 -12.93002 -12.64712 -12.39222 -11.97785 -11.91509 -11.81022 -11.77259 -11.65447 -11.46002 -11.29460 -11.24692 -11.00098 -10.82488 -10.69756 -9.32646 -8.26090 -6.26438 1.33131 1.36018 1.48013 2.37301 3.08801 3.46039 3.65945 3.76763 3.86345 3.97244 4.13217 4.31675 4.40094 4.56625 4.62753 4.69778 4.78138 4.79838 4.80667 4.84866 4.91357 5.02911 5.06440 5.12021 5.14890 5.16713 5.26966 5.36996 5.44052 5.46031 5.52311 5.55320 5.64148 5.72398 6.12087 6.31210 6.52633 6.78748 7.35895 8.90840 Molecular weight = 223.16amu Principal moments of inertia in cm(-1) A = 0.024545 B = 0.009571 C = 0.007432 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1140.507891 B = 2924.865994 C = 3766.838490 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.953 5.953 2 C 0.003 3.997 3 Si 0.944 3.056 4 H -0.265 1.265 5 H -0.286 1.286 6 H -0.252 1.252 7 C -0.511 4.511 8 H 0.031 0.969 9 C 0.004 3.996 10 C 0.092 3.908 11 H 0.024 0.976 12 N -0.674 5.674 13 C 0.030 3.970 14 C -0.110 4.110 15 C -0.079 4.079 16 H 0.064 0.936 17 C -0.077 4.077 18 C -0.111 4.111 19 C -0.119 4.119 20 C -0.123 4.123 21 C -0.138 4.138 22 H 0.263 0.737 23 H 0.012 0.988 24 H 0.027 0.973 25 H 0.330 0.670 26 H 0.038 0.962 27 H 0.084 0.916 28 H 0.073 0.927 29 H 0.088 0.912 30 H 0.062 0.938 31 H 0.069 0.931 32 H 0.077 0.923 33 H 0.069 0.931 34 H 0.079 0.921 35 H 0.067 0.933 36 H 0.063 0.937 37 H 0.053 0.947 38 H 0.054 0.946 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 18.207 -6.449 -3.476 19.626 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.595 5.595 2 C -0.193 4.193 3 Si 0.768 3.232 4 H -0.190 1.190 5 H -0.211 1.211 6 H -0.175 1.175 7 C -0.550 4.550 8 H 0.049 0.951 9 C -0.034 4.034 10 C -0.018 4.018 11 H 0.042 0.958 12 N -0.302 5.302 13 C -0.099 4.099 14 C -0.148 4.148 15 C -0.098 4.098 16 H 0.083 0.917 17 C -0.096 4.096 18 C -0.149 4.149 19 C -0.156 4.156 20 C -0.161 4.161 21 C -0.175 4.175 22 H 0.072 0.928 23 H 0.030 0.970 24 H 0.045 0.955 25 H 0.145 0.855 26 H 0.056 0.944 27 H 0.102 0.898 28 H 0.092 0.908 29 H 0.107 0.893 30 H 0.081 0.919 31 H 0.088 0.912 32 H 0.096 0.904 33 H 0.088 0.912 34 H 0.097 0.903 35 H 0.086 0.914 36 H 0.081 0.919 37 H 0.072 0.928 38 H 0.072 0.928 Dipole moment (debyes) X Y Z Total from point charges 18.396 -5.869 -2.997 19.541 hybrid contribution -1.200 0.225 -0.578 1.351 sum 17.196 -5.644 -3.574 18.448 Atomic orbital electron populations 1.70063 1.08122 1.27798 1.53517 1.25924 0.95529 1.03176 0.94639 0.85751 0.79500 0.78884 0.79107 1.19044 1.21149 1.17549 1.21377 0.91918 0.92744 1.48926 0.95098 1.19590 0.93907 0.93970 0.95923 1.22362 0.94629 0.95203 0.89593 0.95821 1.63688 1.06904 1.24934 1.34717 1.23006 0.93173 0.92516 1.01183 1.22361 0.96428 0.97082 0.98945 1.22033 0.93268 0.98952 0.95545 0.91727 1.21784 0.97120 0.97353 0.93377 1.22422 0.93154 1.01055 0.98253 1.22493 0.99316 0.96121 0.97716 1.22366 0.94567 0.98305 1.00850 1.22424 0.98107 0.97945 0.99058 0.92775 0.96979 0.95529 0.85504 0.94382 0.89750 0.90798 0.89302 0.91903 0.91239 0.90417 0.91195 0.90279 0.91405 0.91860 0.92842 0.92776 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.95 -61.26 13.96 21.45 0.30 -60.96 16 2 C 0.00 0.20 5.47 84.66 0.46 0.66 16 3 Si 0.94 46.05 27.47 68.60 1.88 47.93 16 4 H -0.27 -12.32 7.11 99.48 0.71 -11.61 16 5 H -0.29 -13.70 7.11 99.48 0.71 -12.99 16 6 H -0.25 -11.66 6.54 99.48 0.65 -11.01 16 7 C -0.51 -30.13 9.44 25.60 0.24 -29.89 16 8 H 0.03 1.98 7.85 -2.91 -0.02 1.96 16 9 C 0.00 0.17 3.51 29.85 0.10 0.28 16 10 C 0.09 3.71 2.39 45.00 0.11 3.82 16 11 H 0.02 1.02 7.77 -2.38 -0.02 1.00 16 12 N -0.67 -26.39 7.13 -478.32 -3.41 -29.80 16 13 C 0.03 0.89 7.46 86.45 0.64 1.53 16 14 C -0.11 -2.84 6.15 31.49 0.19 -2.64 16 15 C -0.08 -2.47 1.89 -9.90 -0.02 -2.48 16 16 H 0.06 2.16 7.86 -2.39 -0.02 2.15 16 17 C -0.08 -2.07 2.31 -10.07 -0.02 -2.10 16 18 C -0.11 -2.22 5.24 31.69 0.17 -2.06 16 19 C -0.12 -2.20 6.91 31.91 0.22 -1.97 16 20 C -0.12 -2.81 6.83 31.67 0.22 -2.59 16 21 C -0.14 -4.03 6.14 31.32 0.19 -3.83 16 22 H 0.26 15.85 8.31 -92.71 -0.77 15.08 16 23 H 0.01 0.61 7.20 -2.39 -0.02 0.59 16 24 H 0.03 1.26 4.97 -2.38 -0.01 1.25 16 25 H 0.33 13.67 8.73 -89.69 -0.78 12.89 16 26 H 0.04 1.04 8.14 -2.39 -0.02 1.02 16 27 H 0.08 2.20 8.14 -2.39 -0.02 2.18 16 28 H 0.07 1.77 8.14 -2.39 -0.02 1.75 16 29 H 0.09 1.84 6.92 -2.39 -0.02 1.82 16 30 H 0.06 1.72 8.01 -2.38 -0.02 1.70 16 31 H 0.07 1.37 7.80 -2.38 -0.02 1.35 16 32 H 0.08 1.30 7.95 -2.39 -0.02 1.29 16 33 H 0.07 1.21 8.14 -2.39 -0.02 1.19 16 34 H 0.08 1.21 8.14 -2.39 -0.02 1.19 16 35 H 0.07 1.43 8.14 -2.39 -0.02 1.41 16 36 H 0.06 1.43 8.14 -2.39 -0.02 1.41 16 37 H 0.05 1.60 8.14 -2.39 -0.02 1.58 16 38 H 0.05 1.87 4.93 -2.39 -0.01 1.86 16 Total: -1.00 -66.53 286.48 1.46 -65.07 By element: Atomic # 1 Polarization: 18.87 SS G_CDS: 0.18 Total: 19.05 kcal Atomic # 6 Polarization: -43.80 SS G_CDS: 2.51 Total: -41.29 kcal Atomic # 7 Polarization: -87.65 SS G_CDS: -3.11 Total: -90.76 kcal Atomic # 14 Polarization: 46.05 SS G_CDS: 1.88 Total: 47.93 kcal Total: -66.53 1.46 -65.07 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000261244013.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 20.001 kcal (2) G-P(sol) polarization free energy of solvation -66.528 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -46.527 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.462 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.066 kcal (6) G-S(sol) free energy of system = (1) + (5) -45.065 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.32 seconds