Wall clock time and date at job start Mon Mar 30 2020 02:57:15 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31517 * 1 3 3 Si 1.86802 * 119.99510 * 2 1 4 4 H 1.48501 * 109.47269 * 269.99861 * 3 2 1 5 5 H 1.48505 * 109.47138 * 30.00256 * 3 2 1 6 6 H 1.48501 * 109.47040 * 149.99905 * 3 2 1 7 7 C 1.37871 * 120.00122 * 180.02562 * 2 1 3 8 8 H 1.07996 * 120.00094 * 0.02562 * 7 2 1 9 9 C 1.50711 * 119.99916 * 180.02562 * 7 2 1 10 10 C 1.52995 * 109.46930 * 179.97438 * 9 7 2 11 11 H 1.08998 * 110.33762 * 304.20323 * 10 9 7 12 12 N 1.47842 * 110.37443 * 66.45642 * 10 9 7 13 13 C 1.47440 * 108.57011 * 143.03339 * 12 10 9 14 14 C 1.54317 * 107.23368 * 359.01064 * 13 12 10 15 15 C 1.54909 * 110.46612 * 181.88328 * 10 9 7 16 16 H 1.09000 * 110.98552 * 322.14658 * 15 10 9 17 17 C 1.52996 * 110.99196 * 85.96156 * 15 10 9 18 18 C 1.54274 * 110.03175 * 290.89234 * 17 15 10 19 19 C 1.54887 * 104.19337 * 217.10299 * 18 17 15 20 20 C 1.54893 * 102.74881 * 37.94207 * 19 18 17 21 21 C 1.53871 * 110.03410 * 173.72399 * 17 15 10 22 22 H 0.96997 * 120.00375 * 0.02562 * 1 2 3 23 23 H 1.08999 * 109.46634 * 59.99923 * 9 7 2 24 24 H 1.09001 * 109.46630 * 299.99871 * 9 7 2 25 25 H 1.00903 * 110.99910 * 20.76492 * 12 10 9 26 26 H 1.09000 * 109.89463 * 239.60653 * 13 12 10 27 27 H 1.09001 * 110.02673 * 118.48886 * 13 12 10 28 28 H 1.08999 * 110.70846 * 96.09223 * 14 13 12 29 29 H 1.09000 * 110.71111 * 219.33808 * 14 13 12 30 30 H 1.09002 * 110.01464 * 52.32969 * 17 15 10 31 31 H 1.08998 * 110.48419 * 335.77779 * 18 17 15 32 32 H 1.09002 * 110.48790 * 98.42530 * 18 17 15 33 33 H 1.09000 * 110.75868 * 279.62586 * 19 18 17 34 34 H 1.08997 * 110.91911 * 156.32635 * 19 18 17 35 35 H 1.09010 * 110.48751 * 203.37875 * 20 19 18 36 36 H 1.08998 * 110.60075 * 80.79037 * 20 19 18 37 37 H 1.09007 * 110.03128 * 238.56756 * 21 17 15 38 38 H 1.08994 * 110.03354 * 359.94571 * 21 17 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2490 1.6178 0.0000 4 1 2.4966 2.0466 -1.4001 5 1 1.4464 2.6527 0.7001 6 1 3.5466 1.4404 0.7001 7 6 2.0046 -1.1940 -0.0005 8 1 1.4646 -2.1293 -0.0014 9 6 3.5117 -1.1939 0.0000 10 6 4.0217 -2.6364 -0.0001 11 1 3.6059 -3.1852 0.8449 12 7 3.6718 -3.3059 -1.2709 13 6 4.7824 -4.1969 -1.6535 14 6 5.8785 -4.0493 -0.5773 15 6 5.5698 -2.6635 0.0482 16 1 5.9933 -1.8600 -0.5544 17 6 6.0745 -2.5885 1.4906 18 6 5.7872 -1.1916 2.0790 19 6 7.0233 -0.8900 2.9622 20 6 8.1890 -1.4841 2.1330 21 6 7.6016 -2.7744 1.5250 22 1 -0.4850 0.8400 -0.0004 23 1 3.8745 -0.6807 0.8905 24 1 3.8752 -0.6795 -0.8895 25 1 3.4843 -2.6299 -1.9961 26 1 5.1760 -3.9023 -2.6264 27 1 4.4364 -5.2298 -1.6910 28 1 5.7927 -4.8374 0.1708 29 1 6.8689 -4.0546 -1.0325 30 1 5.5912 -3.3558 2.0954 31 1 5.6983 -0.4531 1.2823 32 1 4.8813 -1.2118 2.6848 33 1 6.9406 -1.3911 3.9266 34 1 7.1530 0.1839 3.0965 35 1 9.0359 -1.7177 2.7784 36 1 8.4900 -0.7937 1.3451 37 1 7.8594 -3.6315 2.1472 38 1 7.9830 -2.9191 0.5142 RHF calculation, no. of doubly occupied orbitals= 43 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000261244015.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:57:15 Heat of formation + Delta-G solvation = -27.510280 kcal Electronic energy + Delta-G solvation = -16125.707842 eV Core-core repulsion = 13773.401752 eV Total energy + Delta-G solvation = -2352.306090 eV No. of doubly occupied orbitals = 43 Molecular weight (most abundant/longest-lived isotopes) = 223.163 amu Computer time = 0.27 seconds Orbital eigenvalues (eV) -39.31390 -36.75187 -32.98777 -30.83948 -30.72304 -28.36121 -27.15664 -25.68197 -22.30454 -21.00612 -20.11276 -19.72647 -19.07499 -16.58671 -15.66821 -15.47880 -15.18768 -14.11051 -13.87741 -13.35204 -13.19638 -13.07001 -12.51178 -12.29240 -11.93180 -11.58859 -11.49032 -11.07358 -10.91275 -10.86213 -10.75271 -10.51453 -10.42478 -10.20677 -10.05335 -9.99052 -9.86428 -9.29840 -9.08522 -8.47757 -7.63008 -5.96482 -3.92689 3.31717 3.40021 3.41685 4.49126 4.70041 4.78628 4.84967 4.96275 5.20213 5.23497 5.36052 5.48940 5.61985 5.63474 5.77980 5.80132 5.84805 5.90200 5.97313 6.01532 6.04500 6.12543 6.21102 6.24623 6.30041 6.40436 6.45908 6.60037 6.64177 6.71101 6.82194 7.14537 7.38022 7.74048 7.87539 8.19111 8.65010 9.15869 9.65996 11.17170 Molecular weight = 223.16amu Principal moments of inertia in cm(-1) A = 0.023375 B = 0.010140 C = 0.007604 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1197.564205 B = 2760.627311 C = 3681.190934 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.904 5.904 2 C 0.065 3.935 3 Si 0.873 3.127 4 H -0.280 1.280 5 H -0.289 1.289 6 H -0.266 1.266 7 C -0.506 4.506 8 H 0.079 0.921 9 C -0.023 4.023 10 C 0.104 3.896 11 H 0.076 0.924 12 N -0.673 5.673 13 C 0.045 3.955 14 C -0.135 4.135 15 C -0.115 4.115 16 H 0.070 0.930 17 C -0.074 4.074 18 C -0.121 4.121 19 C -0.127 4.127 20 C -0.124 4.124 21 C -0.119 4.119 22 H 0.261 0.739 23 H 0.033 0.967 24 H 0.006 0.994 25 H 0.342 0.658 26 H 0.040 0.960 27 H 0.064 0.936 28 H 0.066 0.934 29 H 0.060 0.940 30 H 0.070 0.930 31 H 0.072 0.928 32 H 0.071 0.929 33 H 0.063 0.937 34 H 0.061 0.939 35 H 0.058 0.942 36 H 0.061 0.939 37 H 0.057 0.943 38 H 0.061 0.939 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 15.915 -4.221 2.114 16.600 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.544 5.544 2 C -0.136 4.136 3 Si 0.701 3.299 4 H -0.206 1.206 5 H -0.215 1.215 6 H -0.191 1.191 7 C -0.544 4.544 8 H 0.097 0.903 9 C -0.061 4.061 10 C -0.006 4.006 11 H 0.094 0.906 12 N -0.302 5.302 13 C -0.084 4.084 14 C -0.173 4.173 15 C -0.135 4.135 16 H 0.088 0.912 17 C -0.093 4.093 18 C -0.159 4.159 19 C -0.165 4.165 20 C -0.162 4.162 21 C -0.157 4.157 22 H 0.071 0.929 23 H 0.051 0.949 24 H 0.024 0.976 25 H 0.160 0.840 26 H 0.059 0.941 27 H 0.082 0.918 28 H 0.085 0.915 29 H 0.079 0.921 30 H 0.088 0.912 31 H 0.090 0.910 32 H 0.089 0.911 33 H 0.081 0.919 34 H 0.080 0.920 35 H 0.076 0.924 36 H 0.080 0.920 37 H 0.076 0.924 38 H 0.080 0.920 Dipole moment (debyes) X Y Z Total from point charges 15.329 -4.623 2.387 16.188 hybrid contribution 1.035 1.584 -0.402 1.934 sum 16.364 -3.039 1.985 16.762 Atomic orbital electron populations 1.69917 1.06202 1.26539 1.51708 1.25028 0.94661 0.98800 0.95074 0.86894 0.80437 0.84292 0.78322 1.20584 1.21530 1.19070 1.21135 0.89152 0.94586 1.49559 0.90288 1.20016 0.97860 0.91432 0.96766 1.22446 0.89529 0.96355 0.92223 0.90596 1.61720 1.38468 1.23855 1.06147 1.22602 0.90719 0.98556 0.96561 1.22815 0.98216 0.97765 0.98513 1.23004 0.98779 0.96280 0.95401 0.91207 1.21627 0.94510 0.97643 0.95534 1.22569 0.97515 0.96709 0.99075 1.22526 0.95360 1.00141 0.98435 1.22351 0.97590 0.97227 0.99000 1.22227 0.95611 0.97322 1.00522 0.92942 0.94857 0.97625 0.84027 0.94120 0.91807 0.91497 0.92137 0.91176 0.90969 0.91062 0.91869 0.92038 0.92368 0.92025 0.92388 0.91991 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -28.11 13.96 55.43 0.77 -27.33 16 2 C 0.06 1.89 5.47 -17.82 -0.10 1.79 16 3 Si 0.87 21.66 27.47 -169.99 -4.67 16.99 16 4 H -0.28 -6.87 7.11 56.52 0.40 -6.47 16 5 H -0.29 -7.18 7.11 56.52 0.40 -6.78 16 6 H -0.27 -6.26 6.54 56.52 0.37 -5.89 16 7 C -0.51 -14.29 9.45 -34.44 -0.33 -14.61 16 8 H 0.08 2.47 7.99 -52.49 -0.42 2.05 16 9 C -0.02 -0.54 3.07 -27.88 -0.09 -0.62 16 10 C 0.10 2.06 2.69 -66.19 -0.18 1.88 16 11 H 0.08 1.63 8.00 -51.93 -0.42 1.22 16 12 N -0.67 -13.10 7.09 -103.85 -0.74 -13.83 16 13 C 0.05 0.70 7.58 -2.84 -0.02 0.68 16 14 C -0.13 -1.89 5.66 -24.91 -0.14 -2.03 16 15 C -0.11 -1.82 1.79 -88.48 -0.16 -1.98 16 16 H 0.07 1.15 8.02 -51.93 -0.42 0.74 16 17 C -0.07 -1.07 2.44 -89.50 -0.22 -1.29 16 18 C -0.12 -1.86 4.64 -25.07 -0.12 -1.97 16 19 C -0.13 -1.60 6.91 -24.74 -0.17 -1.77 16 20 C -0.12 -1.42 6.83 -25.07 -0.17 -1.59 16 21 C -0.12 -1.43 6.09 -25.62 -0.16 -1.59 16 22 H 0.26 7.62 8.31 -40.82 -0.34 7.28 16 23 H 0.03 0.76 4.18 -51.93 -0.22 0.55 16 24 H 0.01 0.13 7.48 -51.93 -0.39 -0.26 16 25 H 0.34 6.88 8.31 -39.29 -0.33 6.56 16 26 H 0.04 0.57 8.14 -51.93 -0.42 0.15 16 27 H 0.06 0.95 8.14 -51.93 -0.42 0.53 16 28 H 0.07 0.91 8.04 -51.93 -0.42 0.50 16 29 H 0.06 0.74 7.73 -51.93 -0.40 0.34 16 30 H 0.07 1.03 8.09 -51.93 -0.42 0.61 16 31 H 0.07 1.22 6.62 -51.93 -0.34 0.88 16 32 H 0.07 1.17 7.86 -51.93 -0.41 0.76 16 33 H 0.06 0.74 8.14 -51.93 -0.42 0.32 16 34 H 0.06 0.74 8.14 -51.93 -0.42 0.32 16 35 H 0.06 0.58 8.14 -51.92 -0.42 0.16 16 36 H 0.06 0.70 8.14 -51.93 -0.42 0.28 16 37 H 0.06 0.64 8.14 -51.93 -0.42 0.22 16 38 H 0.06 0.73 6.93 -51.93 -0.36 0.37 16 LS Contribution 286.46 15.07 4.32 4.32 Total: -1.00 -29.73 286.46 -8.82 -38.55 By element: Atomic # 1 Polarization: 11.07 SS G_CDS: -6.66 Total: 4.41 kcal Atomic # 6 Polarization: -21.26 SS G_CDS: -1.84 Total: -23.10 kcal Atomic # 7 Polarization: -41.20 SS G_CDS: 0.04 Total: -41.17 kcal Atomic # 14 Polarization: 21.66 SS G_CDS: -4.67 Total: 16.99 kcal Total LS contribution 4.32 Total: 4.32 kcal Total: -29.73 -8.82 -38.55 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000261244015.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 11.037 kcal (2) G-P(sol) polarization free energy of solvation -29.731 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -18.695 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.816 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.547 kcal (6) G-S(sol) free energy of system = (1) + (5) -27.510 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.27 seconds