Wall clock time and date at job start Mon Mar 30 2020 02:57:15 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31517 * 1 3 3 Si 1.86802 * 119.99510 * 2 1 4 4 H 1.48501 * 109.47269 * 269.99861 * 3 2 1 5 5 H 1.48505 * 109.47138 * 30.00256 * 3 2 1 6 6 H 1.48501 * 109.47040 * 149.99905 * 3 2 1 7 7 C 1.37871 * 120.00122 * 180.02562 * 2 1 3 8 8 H 1.07996 * 120.00094 * 0.02562 * 7 2 1 9 9 C 1.50711 * 119.99916 * 180.02562 * 7 2 1 10 10 C 1.52995 * 109.46930 * 179.97438 * 9 7 2 11 11 H 1.08998 * 110.33762 * 304.20323 * 10 9 7 12 12 N 1.47842 * 110.37443 * 66.45642 * 10 9 7 13 13 C 1.47440 * 108.57011 * 143.03339 * 12 10 9 14 14 C 1.54317 * 107.23368 * 359.01064 * 13 12 10 15 15 C 1.54909 * 110.46612 * 181.88328 * 10 9 7 16 16 H 1.09000 * 110.98552 * 322.14658 * 15 10 9 17 17 C 1.52996 * 110.99196 * 85.96156 * 15 10 9 18 18 C 1.54274 * 110.03175 * 290.89234 * 17 15 10 19 19 C 1.54887 * 104.19337 * 217.10299 * 18 17 15 20 20 C 1.54893 * 102.74881 * 37.94207 * 19 18 17 21 21 C 1.53871 * 110.03410 * 173.72399 * 17 15 10 22 22 H 0.96997 * 120.00375 * 0.02562 * 1 2 3 23 23 H 1.08999 * 109.46634 * 59.99923 * 9 7 2 24 24 H 1.09001 * 109.46630 * 299.99871 * 9 7 2 25 25 H 1.00903 * 110.99910 * 20.76492 * 12 10 9 26 26 H 1.09000 * 109.89463 * 239.60653 * 13 12 10 27 27 H 1.09001 * 110.02673 * 118.48886 * 13 12 10 28 28 H 1.08999 * 110.70846 * 96.09223 * 14 13 12 29 29 H 1.09000 * 110.71111 * 219.33808 * 14 13 12 30 30 H 1.09002 * 110.01464 * 52.32969 * 17 15 10 31 31 H 1.08998 * 110.48419 * 335.77779 * 18 17 15 32 32 H 1.09002 * 110.48790 * 98.42530 * 18 17 15 33 33 H 1.09000 * 110.75868 * 279.62586 * 19 18 17 34 34 H 1.08997 * 110.91911 * 156.32635 * 19 18 17 35 35 H 1.09010 * 110.48751 * 203.37875 * 20 19 18 36 36 H 1.08998 * 110.60075 * 80.79037 * 20 19 18 37 37 H 1.09007 * 110.03128 * 238.56756 * 21 17 15 38 38 H 1.08994 * 110.03354 * 359.94571 * 21 17 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2490 1.6178 0.0000 4 1 2.4966 2.0466 -1.4001 5 1 1.4464 2.6527 0.7001 6 1 3.5466 1.4404 0.7001 7 6 2.0046 -1.1940 -0.0005 8 1 1.4646 -2.1293 -0.0014 9 6 3.5117 -1.1939 0.0000 10 6 4.0217 -2.6364 -0.0001 11 1 3.6059 -3.1852 0.8449 12 7 3.6718 -3.3059 -1.2709 13 6 4.7824 -4.1969 -1.6535 14 6 5.8785 -4.0493 -0.5773 15 6 5.5698 -2.6635 0.0482 16 1 5.9933 -1.8600 -0.5544 17 6 6.0745 -2.5885 1.4906 18 6 5.7872 -1.1916 2.0790 19 6 7.0233 -0.8900 2.9622 20 6 8.1890 -1.4841 2.1330 21 6 7.6016 -2.7744 1.5250 22 1 -0.4850 0.8400 -0.0004 23 1 3.8745 -0.6807 0.8905 24 1 3.8752 -0.6795 -0.8895 25 1 3.4843 -2.6299 -1.9961 26 1 5.1760 -3.9023 -2.6264 27 1 4.4364 -5.2298 -1.6910 28 1 5.7927 -4.8374 0.1708 29 1 6.8689 -4.0546 -1.0325 30 1 5.5912 -3.3558 2.0954 31 1 5.6983 -0.4531 1.2823 32 1 4.8813 -1.2118 2.6848 33 1 6.9406 -1.3911 3.9266 34 1 7.1530 0.1839 3.0965 35 1 9.0359 -1.7177 2.7784 36 1 8.4900 -0.7937 1.3451 37 1 7.8594 -3.6315 2.1472 38 1 7.9830 -2.9191 0.5142 RHF calculation, no. of doubly occupied orbitals= 43 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000261244015.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:57:15 Heat of formation + Delta-G solvation = -46.486011 kcal Electronic energy + Delta-G solvation = -16126.530691 eV Core-core repulsion = 13773.401752 eV Total energy + Delta-G solvation = -2353.128940 eV No. of doubly occupied orbitals = 43 Molecular weight (most abundant/longest-lived isotopes) = 223.163 amu Computer time = 0.32 seconds Orbital eigenvalues (eV) -40.59392 -37.94500 -35.07890 -32.55724 -32.04087 -29.45810 -28.62579 -27.14438 -24.11217 -22.12930 -21.32299 -21.23048 -20.24224 -18.72456 -17.07789 -16.60685 -16.54186 -16.05777 -15.02761 -14.74256 -14.61851 -14.47225 -14.18419 -13.64139 -13.32869 -13.21998 -13.11825 -12.57541 -12.26526 -11.95755 -11.88184 -11.85857 -11.71404 -11.66566 -11.50563 -11.26968 -11.21618 -11.16100 -10.87397 -10.72025 -9.10995 -8.23474 -6.25019 1.33819 1.35891 1.47060 2.37252 3.09863 3.48559 3.62427 3.74997 3.82426 4.05346 4.16863 4.20239 4.46418 4.56761 4.63041 4.63653 4.78035 4.79473 4.82773 4.88028 4.90877 4.94548 5.03979 5.07875 5.15346 5.18172 5.26925 5.31653 5.37806 5.45994 5.53544 5.57242 5.66811 5.72147 6.25174 6.42039 6.63788 6.84907 7.37354 8.93862 Molecular weight = 223.16amu Principal moments of inertia in cm(-1) A = 0.023375 B = 0.010140 C = 0.007604 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1197.564205 B = 2760.627311 C = 3681.190934 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.955 5.955 2 C 0.001 3.999 3 Si 0.945 3.055 4 H -0.270 1.270 5 H -0.287 1.287 6 H -0.245 1.245 7 C -0.509 4.509 8 H 0.030 0.970 9 C -0.014 4.014 10 C 0.105 3.895 11 H 0.049 0.951 12 N -0.698 5.698 13 C 0.042 3.958 14 C -0.124 4.124 15 C -0.104 4.104 16 H 0.070 0.930 17 C -0.074 4.074 18 C -0.128 4.128 19 C -0.124 4.124 20 C -0.120 4.120 21 C -0.113 4.113 22 H 0.263 0.737 23 H 0.039 0.961 24 H 0.010 0.990 25 H 0.335 0.665 26 H 0.059 0.941 27 H 0.068 0.932 28 H 0.071 0.929 29 H 0.090 0.910 30 H 0.063 0.937 31 H 0.055 0.945 32 H 0.048 0.952 33 H 0.071 0.929 34 H 0.065 0.935 35 H 0.078 0.922 36 H 0.063 0.937 37 H 0.072 0.928 38 H 0.070 0.930 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 19.425 -3.956 2.105 19.935 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.596 5.596 2 C -0.194 4.194 3 Si 0.769 3.231 4 H -0.195 1.195 5 H -0.213 1.213 6 H -0.168 1.168 7 C -0.548 4.548 8 H 0.049 0.951 9 C -0.052 4.052 10 C -0.004 4.004 11 H 0.068 0.932 12 N -0.327 5.327 13 C -0.087 4.087 14 C -0.162 4.162 15 C -0.124 4.124 16 H 0.088 0.912 17 C -0.093 4.093 18 C -0.166 4.166 19 C -0.161 4.161 20 C -0.158 4.158 21 C -0.150 4.150 22 H 0.072 0.928 23 H 0.057 0.943 24 H 0.029 0.971 25 H 0.152 0.848 26 H 0.077 0.923 27 H 0.087 0.913 28 H 0.090 0.910 29 H 0.109 0.891 30 H 0.081 0.919 31 H 0.073 0.927 32 H 0.067 0.933 33 H 0.090 0.910 34 H 0.084 0.916 35 H 0.097 0.903 36 H 0.081 0.919 37 H 0.091 0.909 38 H 0.089 0.911 Dipole moment (debyes) X Y Z Total from point charges 18.865 -4.383 2.381 19.513 hybrid contribution -0.173 1.405 -0.405 1.472 sum 18.692 -2.978 1.976 19.030 Atomic orbital electron populations 1.70087 1.08294 1.27734 1.53529 1.25983 0.95516 1.03189 0.94755 0.85739 0.79654 0.78760 0.78978 1.19495 1.21328 1.16801 1.21378 0.91883 0.92752 1.48744 0.95115 1.19910 0.94254 0.94110 0.96919 1.22241 0.92672 0.93740 0.91776 0.93244 1.61658 1.41156 1.24141 1.05764 1.22719 0.90113 0.97818 0.98035 1.22778 0.99038 0.96349 0.98006 1.22870 0.95077 0.97658 0.96757 0.91194 1.21628 0.96686 0.96821 0.94161 1.22554 0.98113 0.97001 0.98913 1.22516 0.94382 1.00758 0.98458 1.22350 0.97554 0.96739 0.99127 1.22185 0.93058 0.98255 1.01527 0.92832 0.94293 0.97144 0.84838 0.92266 0.91326 0.90993 0.89130 0.91850 0.92669 0.93344 0.91048 0.91588 0.90293 0.91854 0.90947 0.91090 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.95 -61.51 13.96 21.45 0.30 -61.21 16 2 C 0.00 0.08 5.47 84.65 0.46 0.54 16 3 Si 0.94 44.97 27.47 68.60 1.88 46.85 16 4 H -0.27 -12.36 7.11 99.48 0.71 -11.66 16 5 H -0.29 -13.53 7.11 99.48 0.71 -12.83 16 6 H -0.24 -10.69 6.54 99.48 0.65 -10.04 16 7 C -0.51 -29.90 9.45 25.60 0.24 -29.66 16 8 H 0.03 2.04 7.99 -2.91 -0.02 2.02 16 9 C -0.01 -0.67 3.07 29.85 0.09 -0.58 16 10 C 0.11 4.21 2.69 45.38 0.12 4.34 16 11 H 0.05 2.22 8.00 -2.39 -0.02 2.20 16 12 N -0.70 -27.37 7.09 -482.48 -3.42 -30.79 16 13 C 0.04 1.23 7.58 86.65 0.66 1.88 16 14 C -0.12 -3.09 5.66 31.78 0.18 -2.91 16 15 C -0.10 -3.10 1.79 -9.41 -0.02 -3.12 16 16 H 0.07 2.13 8.02 -2.39 -0.02 2.11 16 17 C -0.07 -1.99 2.44 -10.07 -0.02 -2.01 16 18 C -0.13 -3.78 4.64 31.67 0.15 -3.63 16 19 C -0.12 -2.79 6.91 31.89 0.22 -2.57 16 20 C -0.12 -2.29 6.83 31.67 0.22 -2.07 16 21 C -0.11 -2.27 6.09 31.32 0.19 -2.08 16 22 H 0.26 15.83 8.31 -92.71 -0.77 15.06 16 23 H 0.04 1.78 4.18 -2.39 -0.01 1.77 16 24 H 0.01 0.48 7.48 -2.39 -0.02 0.46 16 25 H 0.34 13.67 8.31 -89.69 -0.75 12.92 16 26 H 0.06 1.51 8.14 -2.39 -0.02 1.49 16 27 H 0.07 1.93 8.14 -2.39 -0.02 1.91 16 28 H 0.07 1.75 8.04 -2.39 -0.02 1.73 16 29 H 0.09 1.79 7.73 -2.39 -0.02 1.77 16 30 H 0.06 1.78 8.09 -2.39 -0.02 1.77 16 31 H 0.05 1.79 6.62 -2.39 -0.02 1.78 16 32 H 0.05 1.60 7.86 -2.39 -0.02 1.58 16 33 H 0.07 1.49 8.14 -2.39 -0.02 1.47 16 34 H 0.07 1.42 8.14 -2.39 -0.02 1.41 16 35 H 0.08 1.22 8.14 -2.38 -0.02 1.20 16 36 H 0.06 1.20 8.14 -2.39 -0.02 1.18 16 37 H 0.07 1.29 8.14 -2.38 -0.02 1.27 16 38 H 0.07 1.33 6.93 -2.39 -0.02 1.32 16 Total: -1.00 -66.60 286.46 1.47 -65.14 By element: Atomic # 1 Polarization: 21.67 SS G_CDS: 0.22 Total: 21.89 kcal Atomic # 6 Polarization: -44.37 SS G_CDS: 2.49 Total: -41.88 kcal Atomic # 7 Polarization: -88.88 SS G_CDS: -3.12 Total: -92.00 kcal Atomic # 14 Polarization: 44.97 SS G_CDS: 1.88 Total: 46.85 kcal Total: -66.60 1.47 -65.14 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000261244015.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 18.652 kcal (2) G-P(sol) polarization free energy of solvation -66.604 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -47.952 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.466 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.138 kcal (6) G-S(sol) free energy of system = (1) + (5) -46.486 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.32 seconds