Wall clock time and date at job start Mon Mar 30 2020 03:00:29 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31516 * 1 3 3 Si 1.86800 * 120.00017 * 2 1 4 4 H 1.48501 * 109.47057 * 359.97438 * 3 2 1 5 5 H 1.48500 * 109.47389 * 119.99828 * 3 2 1 6 6 H 1.48504 * 109.47102 * 240.00177 * 3 2 1 7 7 C 1.37871 * 120.00217 * 179.97438 * 2 1 3 8 8 H 1.08005 * 120.00140 * 180.02562 * 7 2 1 9 9 C 1.50706 * 120.00102 * 0.02562 * 7 2 1 10 10 H 1.09001 * 110.23381 * 300.70238 * 9 7 2 11 11 C 1.54452 * 110.26253 * 62.68079 * 9 7 2 12 12 C 1.54895 * 102.90749 * 140.91571 * 11 9 7 13 13 N 1.48388 * 103.12793 * 322.21514 * 12 11 9 14 14 C 1.48752 * 105.91006 * 39.93830 * 13 12 11 15 15 C 1.54747 * 107.20503 * 88.52145 * 14 13 12 16 16 C 1.50216 * 109.02516 * 44.27600 * 15 14 13 17 17 C 1.54220 * 112.79072 * 94.01271 * 16 15 14 18 18 C 1.53990 * 112.80778 * 318.05763 * 17 16 15 19 19 C 1.50534 * 112.14695 * 318.50105 * 18 17 16 20 20 C 1.45893 * 111.90499 * 211.58222 * 14 13 12 21 21 H 0.97001 * 119.99646 * 179.97438 * 1 2 3 22 22 H 1.08994 * 110.72413 * 259.26732 * 11 9 7 23 23 H 1.08992 * 110.72916 * 22.38201 * 11 9 7 24 24 H 1.08994 * 110.68630 * 80.63367 * 12 11 9 25 25 H 1.09003 * 110.67891 * 203.81151 * 12 11 9 26 26 H 1.00893 * 111.00533 * 279.31318 * 13 12 11 27 27 H 1.09005 * 109.54341 * 164.14190 * 15 14 13 28 28 H 1.09007 * 109.54378 * 284.40907 * 15 14 13 29 29 H 1.08993 * 108.82003 * 333.16031 * 16 15 14 30 30 H 1.09004 * 108.73189 * 214.80800 * 16 15 14 31 31 H 1.09002 * 108.81786 * 197.19724 * 17 16 15 32 32 H 1.09005 * 108.81734 * 78.91804 * 17 16 15 33 33 H 1.08996 * 108.94489 * 197.81173 * 18 17 16 34 34 H 1.08996 * 108.94157 * 79.18737 * 18 17 16 35 35 H 1.08999 * 109.68814 * 334.74429 * 19 18 17 36 36 H 1.08998 * 109.71476 * 214.19897 * 19 18 17 37 37 H 1.08998 * 108.79524 * 61.97559 * 20 14 13 38 38 H 1.08995 * 108.79688 * 180.21476 * 20 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 1.2842 2.7465 -0.0006 5 1 3.1029 1.6965 1.2125 6 1 3.1029 1.6964 -1.2125 7 6 2.0046 -1.1940 0.0005 8 1 3.0846 -1.1940 0.0010 9 6 1.2511 -2.4992 0.0005 10 1 0.6100 -2.5644 0.8797 11 6 0.4083 -2.6302 -1.2871 12 6 0.5636 -4.1277 -1.6513 13 7 1.9770 -4.4147 -1.3023 14 6 2.2388 -3.6876 -0.0312 15 6 1.8529 -4.6379 1.1275 16 6 2.3894 -6.0101 0.8348 17 6 3.7701 -6.2608 1.4746 18 6 4.7152 -5.0517 1.3477 19 6 4.6319 -4.4063 -0.0098 20 6 3.6254 -3.2446 0.0667 21 1 -0.4850 -0.8401 -0.0004 22 1 -0.6360 -2.3873 -1.0909 23 1 0.8089 -1.9948 -2.0768 24 1 -0.1124 -4.7410 -1.0556 25 1 0.3904 -4.2849 -2.7160 26 1 2.6001 -4.1038 -2.0324 27 1 2.2821 -4.2696 2.0594 28 1 0.7674 -4.6820 1.2168 29 1 2.4752 -6.1311 -0.2450 30 1 1.6856 -6.7498 1.2162 31 1 4.2318 -7.1204 0.9889 32 1 3.6316 -6.4893 2.5314 33 1 5.7391 -5.3833 1.5197 34 1 4.4513 -4.3151 2.1065 35 1 4.2937 -5.1376 -0.7439 36 1 5.6120 -4.0248 -0.2963 37 1 3.8300 -2.5485 -0.7467 38 1 3.7615 -2.7237 1.0144 RHF calculation, no. of doubly occupied orbitals= 43 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000261301294.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:00:29 Heat of formation + Delta-G solvation = -29.620397 kcal Electronic energy + Delta-G solvation = -16806.128394 eV Core-core repulsion = 14453.730802 eV Total energy + Delta-G solvation = -2352.397592 eV No. of doubly occupied orbitals = 43 Molecular weight (most abundant/longest-lived isotopes) = 223.163 amu Computer time = 0.32 seconds Orbital eigenvalues (eV) -41.29996 -37.31444 -34.90865 -33.08678 -32.11925 -30.41196 -27.48035 -25.84991 -25.23060 -23.74100 -21.56227 -20.55184 -19.79542 -18.34857 -16.99442 -16.73097 -15.95043 -15.67370 -15.36812 -15.08544 -14.51796 -14.16737 -13.78205 -13.66026 -13.30540 -12.95419 -12.84244 -12.74226 -12.41340 -12.28292 -11.99386 -11.83814 -11.62513 -11.44952 -11.28870 -11.05149 -10.96977 -10.77225 -10.46121 -10.20044 -9.33193 -8.51484 -6.24656 1.50077 1.57351 1.75291 2.57668 3.24652 3.37924 3.91036 3.96883 4.02454 4.24560 4.32920 4.37793 4.46482 4.55096 4.56427 4.60615 4.72167 4.85996 4.89369 5.00726 5.04231 5.07985 5.18677 5.30429 5.37798 5.39879 5.43726 5.46542 5.54380 5.55111 5.60518 5.69332 5.88509 6.07923 6.15926 6.29421 6.59335 6.76195 7.55779 8.84932 Molecular weight = 223.16amu Principal moments of inertia in cm(-1) A = 0.031902 B = 0.010236 C = 0.008712 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 877.476094 B = 2734.707057 C = 3213.117708 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.946 5.946 2 C -0.036 4.036 3 Si 1.106 2.894 4 H -0.291 1.291 5 H -0.273 1.273 6 H -0.271 1.271 7 C -0.601 4.601 8 H 0.067 0.933 9 C 0.006 3.994 10 H -0.016 1.016 11 C -0.136 4.136 12 C 0.051 3.949 13 N -0.647 5.647 14 C 0.122 3.878 15 C -0.088 4.088 16 C -0.117 4.117 17 C -0.109 4.109 18 C -0.115 4.115 19 C -0.110 4.110 20 C -0.089 4.089 21 H 0.259 0.741 22 H 0.029 0.971 23 H 0.035 0.965 24 H 0.071 0.929 25 H 0.083 0.917 26 H 0.333 0.667 27 H 0.043 0.957 28 H 0.032 0.968 29 H 0.094 0.906 30 H 0.047 0.953 31 H 0.069 0.931 32 H 0.052 0.948 33 H 0.070 0.930 34 H 0.041 0.959 35 H 0.077 0.923 36 H 0.065 0.935 37 H 0.047 0.953 38 H 0.045 0.955 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.920 -10.888 -0.787 13.486 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.585 5.585 2 C -0.234 4.234 3 Si 0.930 3.070 4 H -0.217 1.217 5 H -0.199 1.199 6 H -0.197 1.197 7 C -0.639 4.639 8 H 0.085 0.915 9 C -0.014 4.014 10 H 0.002 0.998 11 C -0.175 4.175 12 C -0.079 4.079 13 N -0.274 5.274 14 C 0.031 3.969 15 C -0.126 4.126 16 C -0.154 4.154 17 C -0.146 4.146 18 C -0.153 4.153 19 C -0.147 4.147 20 C -0.127 4.127 21 H 0.070 0.930 22 H 0.048 0.952 23 H 0.054 0.946 24 H 0.089 0.911 25 H 0.102 0.898 26 H 0.148 0.852 27 H 0.062 0.938 28 H 0.050 0.950 29 H 0.112 0.888 30 H 0.066 0.934 31 H 0.088 0.912 32 H 0.071 0.929 33 H 0.089 0.911 34 H 0.060 0.940 35 H 0.096 0.904 36 H 0.083 0.917 37 H 0.065 0.935 38 H 0.064 0.936 Dipole moment (debyes) X Y Z Total from point charges 7.635 -9.946 -0.493 12.549 hybrid contribution -0.578 -0.090 -0.011 0.585 sum 7.058 -10.037 -0.504 12.280 Atomic orbital electron populations 1.70892 1.08044 1.30325 1.49212 1.27085 0.96649 1.06199 0.93482 0.83057 0.74190 0.72063 0.77730 1.21662 1.19851 1.19663 1.22689 0.95194 0.92339 1.53678 0.91531 1.20222 0.93806 0.95140 0.92189 0.99757 1.23042 0.98275 0.97150 0.99077 1.22977 0.91411 0.93008 1.00521 1.63147 1.03439 1.55730 1.05049 1.20520 0.94912 0.90786 0.90683 1.21307 0.98281 0.96509 0.96542 1.21284 0.95713 0.94493 1.03916 1.21878 0.94867 0.97717 1.00146 1.21316 0.99516 0.97480 0.96967 1.21275 0.97980 0.97207 0.98266 1.20463 0.93727 0.97359 1.01102 0.93024 0.95232 0.94588 0.91087 0.89841 0.85190 0.93845 0.94956 0.88822 0.93408 0.91203 0.92873 0.91118 0.93976 0.90404 0.91669 0.93473 0.93604 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.95 -58.38 13.43 21.45 0.29 -58.09 16 2 C -0.04 -2.08 5.33 84.65 0.45 -1.63 16 3 Si 1.11 50.71 29.90 68.60 2.05 52.76 16 4 H -0.29 -13.57 7.11 99.48 0.71 -12.87 16 5 H -0.27 -11.72 7.11 99.48 0.71 -11.01 16 6 H -0.27 -11.54 7.11 99.48 0.71 -10.83 16 7 C -0.60 -32.79 7.56 25.60 0.19 -32.59 16 8 H 0.07 3.51 4.94 -2.91 -0.01 3.49 16 9 C 0.01 0.31 2.06 -10.51 -0.02 0.29 16 10 H -0.02 -0.89 7.24 -2.39 -0.02 -0.90 16 11 C -0.14 -6.29 5.47 31.74 0.17 -6.12 16 12 C 0.05 1.81 7.39 86.66 0.64 2.45 16 13 N -0.65 -22.05 4.17 -464.55 -1.94 -23.99 16 14 C 0.12 4.75 0.70 2.12 0.00 4.76 16 15 C -0.09 -3.21 4.35 30.29 0.13 -3.08 16 16 C -0.12 -3.40 5.19 30.11 0.16 -3.24 16 17 C -0.11 -2.69 5.85 31.34 0.18 -2.50 16 18 C -0.12 -3.01 5.34 30.13 0.16 -2.85 16 19 C -0.11 -3.11 5.58 30.10 0.17 -2.94 16 20 C -0.09 -3.29 2.66 28.72 0.08 -3.21 16 21 H 0.26 16.12 5.56 -92.71 -0.52 15.61 16 22 H 0.03 1.45 7.02 -2.39 -0.02 1.43 16 23 H 0.04 1.79 7.85 -2.39 -0.02 1.77 16 24 H 0.07 2.49 8.14 -2.39 -0.02 2.47 16 25 H 0.08 2.56 8.14 -2.39 -0.02 2.55 16 26 H 0.33 10.89 8.49 -89.70 -0.76 10.13 16 27 H 0.04 1.64 7.04 -2.38 -0.02 1.62 16 28 H 0.03 1.25 7.69 -2.38 -0.02 1.24 16 29 H 0.09 2.79 5.36 -2.39 -0.01 2.78 16 30 H 0.05 1.31 8.14 -2.39 -0.02 1.29 16 31 H 0.07 1.48 8.14 -2.39 -0.02 1.46 16 32 H 0.05 1.25 8.14 -2.38 -0.02 1.23 16 33 H 0.07 1.54 8.14 -2.39 -0.02 1.52 16 34 H 0.04 1.24 6.65 -2.39 -0.02 1.22 16 35 H 0.08 2.12 6.23 -2.39 -0.01 2.11 16 36 H 0.06 1.66 8.14 -2.39 -0.02 1.64 16 37 H 0.05 1.90 6.67 -2.39 -0.02 1.88 16 38 H 0.05 1.89 6.79 -2.39 -0.02 1.87 16 Total: -1.00 -61.54 270.83 3.25 -58.29 By element: Atomic # 1 Polarization: 21.17 SS G_CDS: 0.53 Total: 21.70 kcal Atomic # 6 Polarization: -52.99 SS G_CDS: 2.32 Total: -50.67 kcal Atomic # 7 Polarization: -80.43 SS G_CDS: -1.65 Total: -82.08 kcal Atomic # 14 Polarization: 50.71 SS G_CDS: 2.05 Total: 52.76 kcal Total: -61.54 3.25 -58.29 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000261301294.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 28.672 kcal (2) G-P(sol) polarization free energy of solvation -61.539 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -32.867 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.246 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -58.292 kcal (6) G-S(sol) free energy of system = (1) + (5) -29.620 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.32 seconds