Wall clock time and date at job start Mon Mar 30 2020 02:37:33 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.52992 * 109.47482 * 2 1 4 4 N 1.46506 * 109.47289 * 120.00172 * 2 1 3 5 5 C 1.34953 * 125.97082 * 275.00211 * 4 2 1 6 6 C 1.35246 * 107.86236 * 180.02562 * 5 4 2 7 7 C 1.40431 * 107.86561 * 359.97438 * 6 5 4 8 8 N 1.39983 * 125.98186 * 180.02562 * 7 6 5 9 9 C 1.46504 * 119.99730 * 0.02562 * 8 7 6 10 10 H 1.09000 * 109.46973 * 35.00065 * 9 8 7 11 11 C 1.53001 * 109.47217 * 275.00306 * 9 8 7 12 12 C 1.50698 * 109.46885 * 154.99753 * 9 8 7 13 13 H 1.07991 * 120.00412 * 0.02562 * 12 9 8 14 14 C 1.37878 * 119.99644 * 179.97438 * 12 9 8 15 15 N 1.31513 * 120.00372 * 0.02562 * 14 12 9 16 16 Si 1.86799 * 119.99795 * 180.02562 * 14 12 9 17 17 H 1.48503 * 109.47139 * 60.00277 * 16 14 12 18 18 H 1.48504 * 109.47416 * 180.02562 * 16 14 12 19 19 H 1.48506 * 109.47222 * 300.00156 * 16 14 12 20 20 N 1.31230 * 108.04408 * 359.72638 * 7 6 5 21 21 H 1.09002 * 109.47153 * 59.99783 * 1 2 3 22 22 H 1.09001 * 109.46832 * 299.99974 * 1 2 3 23 23 H 1.09004 * 109.47261 * 179.97438 * 1 2 3 24 24 H 1.08998 * 109.47533 * 239.99846 * 2 1 3 25 25 H 1.09001 * 109.47066 * 60.00169 * 3 2 1 26 26 H 1.08996 * 109.47747 * 179.97438 * 3 2 1 27 27 H 1.09002 * 109.47103 * 300.00247 * 3 2 1 28 28 H 1.08001 * 126.07081 * 0.03229 * 5 4 2 29 29 H 1.08002 * 126.06941 * 180.02562 * 6 5 4 30 30 H 0.96997 * 120.00459 * 180.02562 * 8 7 6 31 31 H 1.08997 * 109.46814 * 180.02562 * 11 9 8 32 32 H 1.09000 * 109.46953 * 299.99773 * 11 9 8 33 33 H 1.08991 * 109.47363 * 60.00055 * 11 9 8 34 34 H 0.96996 * 119.99886 * 179.97438 * 15 14 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 7 2.0184 -0.6907 1.1962 5 6 2.1928 -0.1380 2.4149 6 6 2.6565 -1.1004 3.2444 7 6 2.7697 -2.2887 2.5047 8 7 3.2141 -3.5227 2.9938 9 6 3.6121 -3.6539 4.3977 10 1 2.9806 -3.0154 5.0155 11 6 5.0740 -3.2307 4.5550 12 6 3.4545 -5.0881 4.8326 13 1 3.0944 -5.8280 4.1332 14 6 3.7712 -5.4558 6.1231 15 7 4.2102 -4.5549 6.9747 16 14 3.5766 -7.2338 6.6620 17 1 4.4369 -8.1033 5.8199 18 1 3.9799 -7.3668 8.0850 19 1 2.1577 -7.6448 6.5097 20 7 2.3799 -2.0416 1.2762 21 1 -0.3633 0.5139 -0.8900 22 1 -0.3633 0.5138 0.8900 23 1 -0.3634 -1.0277 -0.0005 24 1 1.8934 -0.5138 -0.8899 25 1 1.6768 1.9562 0.8900 26 1 3.1300 1.4424 0.0005 27 1 1.6767 1.9563 -0.8900 28 1 1.9969 0.8903 2.6808 29 1 2.8962 -0.9771 4.2902 30 1 3.2585 -4.2910 2.4034 31 1 5.3701 -3.3287 5.5994 32 1 5.7055 -3.8692 3.9372 33 1 5.1879 -2.1934 4.2405 34 1 4.4326 -4.8136 7.8827 RHF calculation, no. of doubly occupied orbitals= 42 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000300865076.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:37:33 Heat of formation + Delta-G solvation = 73.308095 kcal Electronic energy + Delta-G solvation = -15094.239067 eV Core-core repulsion = 12642.764446 eV Total energy + Delta-G solvation = -2451.474621 eV No. of doubly occupied orbitals = 42 Molecular weight (most abundant/longest-lived isotopes) = 223.138 amu Computer time = 0.24 seconds Orbital eigenvalues (eV) -40.44557 -36.19409 -34.77269 -32.33648 -29.76519 -28.95402 -27.46778 -27.15039 -25.16069 -22.43157 -21.08248 -19.60802 -18.93442 -16.89661 -16.44736 -15.15691 -14.84104 -14.70622 -14.12581 -13.66472 -13.03859 -12.86993 -12.63182 -12.47097 -12.08121 -12.00717 -11.80195 -11.42372 -11.12273 -10.99859 -10.95599 -10.68927 -10.24677 -10.14353 -9.69926 -9.39009 -8.94328 -8.43606 -8.01586 -6.59927 -6.07325 -4.14159 2.58371 2.97689 3.30904 3.34968 3.38026 3.89089 4.34576 4.56607 4.75761 4.89529 5.05205 5.20320 5.25550 5.35943 5.53826 5.57775 5.72305 5.84140 6.08898 6.20903 6.47107 6.49984 6.84828 7.05339 7.11151 7.22958 7.59605 7.71273 7.78532 7.94848 8.11770 8.26790 8.76324 8.89459 9.19025 9.53382 10.98846 Molecular weight = 223.14amu Principal moments of inertia in cm(-1) A = 0.061228 B = 0.005539 C = 0.005337 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 457.198331 B = 5054.014903 C = 5245.251679 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.164 4.164 2 C 0.165 3.835 3 C -0.163 4.163 4 N -0.384 5.384 5 C 0.064 3.936 6 C -0.298 4.298 7 C 0.353 3.647 8 N -0.704 5.704 9 C 0.284 3.716 10 H 0.037 0.963 11 C -0.151 4.151 12 C -0.526 4.526 13 H 0.060 0.940 14 C 0.066 3.934 15 N -0.888 5.888 16 Si 0.901 3.099 17 H -0.276 1.276 18 H -0.286 1.286 19 H -0.277 1.277 20 N -0.382 5.382 21 H 0.068 0.932 22 H 0.059 0.941 23 H 0.064 0.936 24 H 0.094 0.906 25 H 0.064 0.936 26 H 0.065 0.935 27 H 0.075 0.925 28 H 0.160 0.840 29 H 0.142 0.858 30 H 0.391 0.609 31 H 0.088 0.912 32 H 0.027 0.973 33 H 0.012 0.988 34 H 0.264 0.736 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.380 10.645 -9.876 15.167 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.222 4.222 2 C 0.062 3.938 3 C -0.221 4.221 4 N -0.167 5.167 5 C -0.082 4.082 6 C -0.331 4.331 7 C 0.094 3.906 8 N -0.342 5.342 9 C 0.181 3.819 10 H 0.054 0.946 11 C -0.211 4.211 12 C -0.565 4.565 13 H 0.078 0.922 14 C -0.137 4.137 15 N -0.526 5.526 16 Si 0.729 3.271 17 H -0.202 1.202 18 H -0.212 1.212 19 H -0.202 1.202 20 N -0.217 5.217 21 H 0.087 0.913 22 H 0.078 0.922 23 H 0.083 0.917 24 H 0.112 0.888 25 H 0.083 0.917 26 H 0.084 0.916 27 H 0.094 0.906 28 H 0.177 0.823 29 H 0.159 0.841 30 H 0.224 0.776 31 H 0.107 0.893 32 H 0.046 0.954 33 H 0.031 0.969 34 H 0.073 0.927 Dipole moment (debyes) X Y Z Total from point charges -4.505 10.316 -10.711 15.539 hybrid contribution 0.068 -0.820 1.015 1.306 sum -4.437 9.497 -9.696 14.279 Atomic orbital electron populations 1.22246 0.94596 1.03096 1.02272 1.20940 0.94089 0.92133 0.86627 1.22171 1.02243 0.94658 1.03007 1.48091 1.54113 1.07019 1.07507 1.22107 1.01205 0.98978 0.85914 1.21152 1.18058 0.92408 1.01477 1.19560 0.92208 0.88567 0.90286 1.44671 1.71534 1.05320 1.12664 1.18581 0.91550 0.96549 0.75226 0.94567 1.22194 0.99293 0.96187 1.03389 1.21207 1.44776 0.93604 0.96913 0.92154 1.24854 0.94767 0.97780 0.96283 1.69875 1.44159 1.33299 1.05315 0.86514 0.78604 0.84508 0.77505 1.20193 1.21189 1.20219 1.77392 1.32934 0.93044 1.18337 0.91267 0.92174 0.91714 0.88782 0.91738 0.91637 0.90622 0.82252 0.84055 0.77598 0.89345 0.95394 0.96892 0.92650 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.69 9.52 37.16 0.35 -1.34 16 2 C 0.16 1.96 3.93 -67.93 -0.27 1.70 16 3 C -0.16 -1.43 8.83 37.15 0.33 -1.10 16 4 N -0.38 -6.40 3.52 -54.88 -0.19 -6.59 16 5 C 0.06 1.03 10.58 -17.24 -0.18 0.85 16 6 C -0.30 -5.95 9.92 -39.82 -0.40 -6.34 16 7 C 0.35 7.79 8.14 -154.55 -1.26 6.53 16 8 N -0.70 -16.43 5.28 -54.70 -0.29 -16.72 16 9 C 0.28 7.27 2.56 -69.08 -0.18 7.09 16 10 H 0.04 1.01 7.14 -51.93 -0.37 0.64 16 11 C -0.15 -3.76 9.28 37.16 0.34 -3.41 16 12 C -0.53 -14.37 8.73 -34.44 -0.30 -14.67 16 13 H 0.06 1.62 7.74 -52.49 -0.41 1.22 16 14 C 0.07 1.78 5.30 -17.82 -0.09 1.69 16 15 N -0.89 -24.85 11.32 55.43 0.63 -24.22 16 16 Si 0.90 21.06 29.54 -169.99 -5.02 16.04 16 17 H -0.28 -6.40 7.11 56.52 0.40 -5.99 16 18 H -0.29 -6.61 7.11 56.52 0.40 -6.21 16 19 H -0.28 -6.44 7.11 56.52 0.40 -6.04 16 20 N -0.38 -7.95 12.59 31.41 0.40 -7.56 16 21 H 0.07 0.52 8.14 -51.93 -0.42 0.10 16 22 H 0.06 0.61 8.14 -51.93 -0.42 0.19 16 23 H 0.06 0.79 8.14 -51.93 -0.42 0.37 16 24 H 0.09 1.13 8.14 -51.93 -0.42 0.70 16 25 H 0.06 0.52 7.15 -51.93 -0.37 0.15 16 26 H 0.06 0.63 8.14 -51.93 -0.42 0.21 16 27 H 0.07 0.49 8.14 -51.93 -0.42 0.06 16 28 H 0.16 1.91 7.25 -52.49 -0.38 1.53 16 29 H 0.14 2.85 7.45 -52.49 -0.39 2.45 16 30 H 0.39 8.82 8.67 -40.82 -0.35 8.47 16 31 H 0.09 2.35 6.07 -51.93 -0.32 2.03 16 32 H 0.03 0.67 8.14 -51.93 -0.42 0.25 16 33 H 0.01 0.28 8.14 -51.93 -0.42 -0.14 16 34 H 0.26 7.03 8.31 -40.82 -0.34 6.69 16 LS Contribution 285.26 15.07 4.30 4.30 Total: -1.00 -30.14 285.26 -6.93 -37.08 By element: Atomic # 1 Polarization: 11.77 SS G_CDS: -5.11 Total: 6.67 kcal Atomic # 6 Polarization: -7.35 SS G_CDS: -1.65 Total: -9.00 kcal Atomic # 7 Polarization: -55.63 SS G_CDS: 0.54 Total: -55.09 kcal Atomic # 14 Polarization: 21.06 SS G_CDS: -5.02 Total: 16.04 kcal Total LS contribution 4.30 Total: 4.30 kcal Total: -30.14 -6.93 -37.08 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000300865076.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 110.387 kcal (2) G-P(sol) polarization free energy of solvation -30.145 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 80.242 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.934 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.079 kcal (6) G-S(sol) free energy of system = (1) + (5) 73.308 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.24 seconds