Wall clock time and date at job start Mon Mar 30 2020 02:40:29 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 N 1.46504 * 109.47153 * 2 1 4 4 C 1.34965 * 125.97161 * 124.99928 * 3 2 1 5 5 C 1.35250 * 107.85873 * 180.22557 * 4 3 2 6 6 C 1.40429 * 107.86589 * 359.64258 * 5 4 3 7 7 N 1.39982 * 125.97621 * 180.14917 * 6 5 4 8 8 C 1.46495 * 120.00178 * 0.22150 * 7 6 5 9 9 C 1.52999 * 109.47323 * 180.02562 * 8 7 6 10 10 C 1.52998 * 109.47218 * 180.02562 * 9 8 7 11 11 C 1.50704 * 109.47141 * 180.02562 * 10 9 8 12 12 H 1.08004 * 119.99874 * 359.97438 * 11 10 9 13 13 C 1.37880 * 119.99961 * 180.02562 * 11 10 9 14 14 N 1.31515 * 119.99931 * 359.97438 * 13 11 10 15 15 Si 1.86797 * 119.99983 * 180.02562 * 13 11 10 16 16 H 1.48502 * 109.47457 * 89.99163 * 15 13 11 17 17 H 1.48497 * 109.47007 * 209.99761 * 15 13 11 18 18 H 1.48505 * 109.47012 * 329.99248 * 15 13 11 19 19 N 1.31223 * 108.04451 * 0.35842 * 6 5 4 20 20 H 1.09005 * 109.46990 * 59.99978 * 1 2 3 21 21 H 1.08998 * 109.47296 * 179.97438 * 1 2 3 22 22 H 1.09004 * 109.47427 * 300.00904 * 1 2 3 23 23 H 1.08993 * 109.47212 * 239.99843 * 2 1 3 24 24 H 1.09006 * 109.46812 * 119.99257 * 2 1 3 25 25 H 1.08002 * 126.06683 * 359.95586 * 4 3 2 26 26 H 1.07999 * 126.06095 * 179.77136 * 5 4 3 27 27 H 0.97001 * 119.99863 * 180.23292 * 7 6 5 28 28 H 1.09001 * 109.47582 * 300.00561 * 8 7 6 29 29 H 1.09008 * 109.47011 * 60.00343 * 8 7 6 30 30 H 1.08998 * 109.47274 * 300.00166 * 9 8 7 31 31 H 1.08997 * 109.47522 * 60.00204 * 9 8 7 32 32 H 1.09001 * 109.47402 * 300.00051 * 10 9 8 33 33 H 1.09003 * 109.47328 * 60.00375 * 10 9 8 34 34 H 0.97002 * 119.99833 * 180.02562 * 14 13 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0184 1.3812 0.0000 4 6 2.8733 1.9198 0.8948 5 6 3.0705 3.2136 0.5532 6 6 2.3131 3.4750 -0.6000 7 7 2.2423 4.6978 -1.2777 8 6 3.0081 5.8490 -0.7935 9 6 2.7546 7.0505 -1.7062 10 6 3.5549 8.2526 -1.2009 11 6 3.3048 9.4362 -2.0996 12 1 2.6416 9.3405 -2.9467 13 6 3.9233 10.6411 -1.8409 14 7 4.7312 10.7574 -0.8097 15 14 3.6127 12.1084 -2.9544 16 1 2.4500 12.8790 -2.4450 17 1 4.8150 12.9798 -2.9718 18 1 3.3262 11.6327 -4.3317 19 7 1.6797 2.3737 -0.9286 20 1 -0.3633 0.5139 -0.8900 21 1 -0.3634 -1.0276 -0.0005 22 1 -0.3634 0.5140 0.8899 23 1 1.8933 -0.5138 -0.8899 24 1 1.8933 -0.5138 0.8901 25 1 3.3173 1.4096 1.7367 26 1 3.7005 3.9196 1.0738 27 1 1.6861 4.7829 -2.0678 28 1 2.6956 6.0922 0.2220 29 1 4.0708 5.6064 -0.7983 30 1 3.0669 6.8075 -2.7219 31 1 1.6920 7.2929 -1.7011 32 1 3.2430 8.4957 -0.1852 33 1 4.6176 8.0099 -1.2065 34 1 5.1660 11.6052 -0.6276 RHF calculation, no. of doubly occupied orbitals= 42 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000300867053.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:40:29 Heat of formation + Delta-G solvation = 63.699829 kcal Electronic energy + Delta-G solvation = -14331.682598 eV Core-core repulsion = 11879.791331 eV Total energy + Delta-G solvation = -2451.891267 eV No. of doubly occupied orbitals = 42 Molecular weight (most abundant/longest-lived isotopes) = 223.138 amu Computer time = 0.24 seconds Orbital eigenvalues (eV) -40.85011 -36.29470 -34.28064 -33.07429 -31.22273 -29.73923 -28.57285 -26.21410 -23.42659 -22.90999 -21.04229 -20.02862 -19.74528 -17.15401 -16.31838 -15.72626 -15.17393 -14.65148 -14.52995 -14.24140 -14.12988 -13.38561 -12.81932 -12.56441 -12.24967 -12.21743 -11.86568 -11.70810 -11.48843 -10.90260 -10.64821 -10.54356 -10.22069 -10.09061 -9.64282 -9.43744 -9.09418 -8.51174 -8.34492 -7.33042 -5.99708 -4.02012 2.12701 2.54880 3.31135 3.33128 3.39268 3.42777 3.88172 4.47046 4.51199 4.80093 4.87058 5.01174 5.35876 5.36364 5.44228 5.66750 5.82226 5.85833 5.90343 5.95217 5.97276 6.22189 6.53419 6.68939 6.81098 7.04266 7.22584 7.46406 7.66669 7.80165 7.97868 7.99994 8.39039 8.42929 9.04680 9.62037 11.11697 Molecular weight = 223.14amu Principal moments of inertia in cm(-1) A = 0.084876 B = 0.003831 C = 0.003706 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 329.814806 B = 7307.265528 C = 7553.269753 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.164 4.164 2 C 0.139 3.861 3 N -0.383 5.383 4 C 0.070 3.930 5 C -0.304 4.304 6 C 0.343 3.657 7 N -0.719 5.719 8 C 0.137 3.863 9 C -0.120 4.120 10 C 0.025 3.975 11 C -0.521 4.521 12 H 0.055 0.945 13 C 0.056 3.944 14 N -0.895 5.895 15 Si 0.893 3.107 16 H -0.281 1.281 17 H -0.286 1.286 18 H -0.274 1.274 19 N -0.363 5.363 20 H 0.070 0.930 21 H 0.069 0.931 22 H 0.059 0.941 23 H 0.077 0.923 24 H 0.090 0.910 25 H 0.169 0.831 26 H 0.144 0.856 27 H 0.400 0.600 28 H 0.054 0.946 29 H 0.054 0.946 30 H 0.054 0.946 31 H 0.054 0.946 32 H 0.018 0.982 33 H 0.019 0.981 34 H 0.261 0.739 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.827 -19.933 3.846 20.866 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.222 4.222 2 C 0.018 3.982 3 N -0.166 5.166 4 C -0.076 4.076 5 C -0.337 4.337 6 C 0.085 3.915 7 N -0.360 5.360 8 C 0.013 3.987 9 C -0.158 4.158 10 C -0.013 4.013 11 C -0.559 4.559 12 H 0.074 0.926 13 C -0.145 4.145 14 N -0.535 5.535 15 Si 0.721 3.279 16 H -0.207 1.207 17 H -0.212 1.212 18 H -0.199 1.199 19 N -0.197 5.197 20 H 0.089 0.911 21 H 0.088 0.912 22 H 0.078 0.922 23 H 0.096 0.904 24 H 0.108 0.892 25 H 0.186 0.814 26 H 0.162 0.838 27 H 0.235 0.765 28 H 0.072 0.928 29 H 0.072 0.928 30 H 0.073 0.927 31 H 0.073 0.927 32 H 0.037 0.963 33 H 0.037 0.963 34 H 0.070 0.930 Dipole moment (debyes) X Y Z Total from point charges -5.412 -20.396 3.268 21.353 hybrid contribution 0.312 1.272 -0.176 1.321 sum -5.100 -19.124 3.091 20.033 Atomic orbital electron populations 1.22042 0.94265 1.02271 1.03639 1.21499 0.95768 0.77938 1.03020 1.48121 1.37070 1.09537 1.21839 1.22335 0.95065 0.94389 0.95857 1.21131 1.12673 0.97114 1.02749 1.19386 0.93270 0.87297 0.91587 1.44049 1.53619 1.06162 1.32143 1.21507 0.94584 0.84279 0.98285 1.21851 1.01230 0.94596 0.98153 1.19025 0.95012 0.90593 0.96647 1.21234 1.27264 0.95401 1.12028 0.92642 1.25022 0.95157 0.98891 0.95402 1.69963 1.30047 1.25505 1.27938 0.86584 0.77661 0.82600 0.81100 1.20669 1.21230 1.19876 1.77368 1.29417 0.96482 1.16384 0.91103 0.91204 0.92235 0.90441 0.89154 0.81429 0.83803 0.76545 0.92776 0.92766 0.92740 0.92739 0.96320 0.96307 0.92980 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.33 10.10 37.16 0.38 -0.95 16 2 C 0.14 1.16 7.23 -4.04 -0.03 1.13 16 3 N -0.38 -4.90 3.68 -61.38 -0.23 -5.13 16 4 C 0.07 0.84 11.44 -17.24 -0.20 0.64 16 5 C -0.30 -4.47 10.11 -39.82 -0.40 -4.87 16 6 C 0.34 5.73 8.16 -154.55 -1.26 4.47 16 7 N -0.72 -12.00 5.77 -60.06 -0.35 -12.35 16 8 C 0.14 2.42 5.60 -4.05 -0.02 2.40 16 9 C -0.12 -2.44 5.27 -26.73 -0.14 -2.58 16 10 C 0.02 0.63 4.97 -27.88 -0.14 0.50 16 11 C -0.52 -14.74 9.11 -34.44 -0.31 -15.06 16 12 H 0.06 1.53 7.74 -52.48 -0.41 1.12 16 13 C 0.06 1.62 5.46 -17.82 -0.10 1.52 16 14 N -0.90 -26.89 13.29 55.43 0.74 -26.15 16 15 Si 0.89 21.71 29.54 -169.99 -5.02 16.69 16 16 H -0.28 -6.73 7.11 56.52 0.40 -6.32 16 17 H -0.29 -6.89 7.11 56.52 0.40 -6.49 16 18 H -0.27 -6.53 7.11 56.52 0.40 -6.13 16 19 N -0.36 -5.92 12.43 31.41 0.39 -5.53 16 20 H 0.07 0.72 8.14 -51.93 -0.42 0.30 16 21 H 0.07 0.38 8.14 -51.93 -0.42 -0.04 16 22 H 0.06 0.52 8.14 -51.93 -0.42 0.10 16 23 H 0.08 0.60 8.14 -51.93 -0.42 0.18 16 24 H 0.09 0.48 8.07 -51.93 -0.42 0.06 16 25 H 0.17 1.27 8.06 -52.49 -0.42 0.85 16 26 H 0.14 1.99 7.90 -52.49 -0.41 1.58 16 27 H 0.40 6.35 8.60 -40.82 -0.35 6.00 16 28 H 0.05 0.96 8.14 -51.93 -0.42 0.54 16 29 H 0.05 0.96 8.14 -51.92 -0.42 0.54 16 30 H 0.05 1.09 8.14 -51.93 -0.42 0.67 16 31 H 0.05 1.09 8.14 -51.93 -0.42 0.67 16 32 H 0.02 0.50 8.14 -51.93 -0.42 0.07 16 33 H 0.02 0.50 8.14 -51.93 -0.42 0.08 16 34 H 0.26 7.38 8.31 -40.82 -0.34 7.04 16 LS Contribution 293.56 15.07 4.42 4.42 Total: -1.00 -32.39 293.56 -7.65 -40.04 By element: Atomic # 1 Polarization: 6.18 SS G_CDS: -5.38 Total: 0.80 kcal Atomic # 6 Polarization: -10.57 SS G_CDS: -2.23 Total: -12.80 kcal Atomic # 7 Polarization: -49.71 SS G_CDS: 0.55 Total: -49.15 kcal Atomic # 14 Polarization: 21.71 SS G_CDS: -5.02 Total: 16.69 kcal Total LS contribution 4.42 Total: 4.42 kcal Total: -32.39 -7.65 -40.04 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000300867053.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 103.738 kcal (2) G-P(sol) polarization free energy of solvation -32.392 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 71.347 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.647 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.038 kcal (6) G-S(sol) free energy of system = (1) + (5) 63.700 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.24 seconds