Wall clock time and date at job start Mon Mar 30 2020 02:40:29 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 N 1.46504 * 109.47153 * 2 1 4 4 C 1.34965 * 125.97161 * 124.99928 * 3 2 1 5 5 C 1.35250 * 107.85873 * 180.22557 * 4 3 2 6 6 C 1.40429 * 107.86589 * 359.64258 * 5 4 3 7 7 N 1.39982 * 125.97621 * 180.14917 * 6 5 4 8 8 C 1.46495 * 120.00178 * 0.22150 * 7 6 5 9 9 C 1.52999 * 109.47323 * 180.02562 * 8 7 6 10 10 C 1.52998 * 109.47218 * 180.02562 * 9 8 7 11 11 C 1.50704 * 109.47141 * 180.02562 * 10 9 8 12 12 H 1.08004 * 119.99874 * 359.97438 * 11 10 9 13 13 C 1.37880 * 119.99961 * 180.02562 * 11 10 9 14 14 N 1.31515 * 119.99931 * 359.97438 * 13 11 10 15 15 Si 1.86797 * 119.99983 * 180.02562 * 13 11 10 16 16 H 1.48502 * 109.47457 * 89.99163 * 15 13 11 17 17 H 1.48497 * 109.47007 * 209.99761 * 15 13 11 18 18 H 1.48505 * 109.47012 * 329.99248 * 15 13 11 19 19 N 1.31223 * 108.04451 * 0.35842 * 6 5 4 20 20 H 1.09005 * 109.46990 * 59.99978 * 1 2 3 21 21 H 1.08998 * 109.47296 * 179.97438 * 1 2 3 22 22 H 1.09004 * 109.47427 * 300.00904 * 1 2 3 23 23 H 1.08993 * 109.47212 * 239.99843 * 2 1 3 24 24 H 1.09006 * 109.46812 * 119.99257 * 2 1 3 25 25 H 1.08002 * 126.06683 * 359.95586 * 4 3 2 26 26 H 1.07999 * 126.06095 * 179.77136 * 5 4 3 27 27 H 0.97001 * 119.99863 * 180.23292 * 7 6 5 28 28 H 1.09001 * 109.47582 * 300.00561 * 8 7 6 29 29 H 1.09008 * 109.47011 * 60.00343 * 8 7 6 30 30 H 1.08998 * 109.47274 * 300.00166 * 9 8 7 31 31 H 1.08997 * 109.47522 * 60.00204 * 9 8 7 32 32 H 1.09001 * 109.47402 * 300.00051 * 10 9 8 33 33 H 1.09003 * 109.47328 * 60.00375 * 10 9 8 34 34 H 0.97002 * 119.99833 * 180.02562 * 14 13 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0184 1.3812 0.0000 4 6 2.8733 1.9198 0.8948 5 6 3.0705 3.2136 0.5532 6 6 2.3131 3.4750 -0.6000 7 7 2.2423 4.6978 -1.2777 8 6 3.0081 5.8490 -0.7935 9 6 2.7546 7.0505 -1.7062 10 6 3.5549 8.2526 -1.2009 11 6 3.3048 9.4362 -2.0996 12 1 2.6416 9.3405 -2.9467 13 6 3.9233 10.6411 -1.8409 14 7 4.7312 10.7574 -0.8097 15 14 3.6127 12.1084 -2.9544 16 1 2.4500 12.8790 -2.4450 17 1 4.8150 12.9798 -2.9718 18 1 3.3262 11.6327 -4.3317 19 7 1.6797 2.3737 -0.9286 20 1 -0.3633 0.5139 -0.8900 21 1 -0.3634 -1.0276 -0.0005 22 1 -0.3634 0.5140 0.8899 23 1 1.8933 -0.5138 -0.8899 24 1 1.8933 -0.5138 0.8901 25 1 3.3173 1.4096 1.7367 26 1 3.7005 3.9196 1.0738 27 1 1.6861 4.7829 -2.0678 28 1 2.6956 6.0922 0.2220 29 1 4.0708 5.6064 -0.7983 30 1 3.0669 6.8075 -2.7219 31 1 1.6920 7.2929 -1.7011 32 1 3.2430 8.4957 -0.1852 33 1 4.6176 8.0099 -1.2065 34 1 5.1660 11.6052 -0.6276 RHF calculation, no. of doubly occupied orbitals= 42 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000300867053.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:40:29 Heat of formation + Delta-G solvation = 43.479707 kcal Electronic energy + Delta-G solvation = -14332.559408 eV Core-core repulsion = 11879.791331 eV Total energy + Delta-G solvation = -2452.768077 eV No. of doubly occupied orbitals = 42 Molecular weight (most abundant/longest-lived isotopes) = 223.138 amu Computer time = 0.26 seconds Orbital eigenvalues (eV) -41.89674 -37.68209 -35.69426 -34.59714 -32.85728 -30.94046 -29.63556 -27.98516 -24.86301 -24.10465 -22.44115 -21.34312 -20.96167 -18.48388 -18.11616 -16.79440 -16.51023 -16.39613 -15.96969 -15.52045 -15.10606 -14.43833 -14.25829 -13.82230 -13.77761 -13.59418 -13.14534 -12.89661 -12.75286 -12.52081 -12.32452 -12.20512 -11.72774 -11.46454 -11.31615 -11.17730 -11.01030 -10.53821 -9.59032 -8.52822 -8.18997 -6.29636 1.13751 1.41674 1.42837 1.53833 1.60471 2.14080 2.42042 2.72074 3.14571 3.80724 4.07775 4.18660 4.21319 4.28500 4.43254 4.53289 4.61945 4.74810 4.86896 4.94052 4.97762 5.01553 5.10740 5.18430 5.27614 5.49247 5.54408 5.74432 5.85751 6.17708 6.27359 6.38122 6.76295 6.87309 7.20298 7.39393 8.92956 Molecular weight = 223.14amu Principal moments of inertia in cm(-1) A = 0.084876 B = 0.003831 C = 0.003706 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 329.814806 B = 7307.265528 C = 7553.269753 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.160 4.160 2 C 0.128 3.872 3 N -0.380 5.380 4 C 0.092 3.908 5 C -0.339 4.339 6 C 0.319 3.681 7 N -0.723 5.723 8 C 0.156 3.844 9 C -0.104 4.104 10 C 0.028 3.972 11 C -0.544 4.544 12 H 0.060 0.940 13 C 0.000 4.000 14 N -0.932 5.932 15 Si 0.965 3.035 16 H -0.273 1.273 17 H -0.282 1.282 18 H -0.264 1.264 19 N -0.394 5.394 20 H 0.042 0.958 21 H 0.099 0.901 22 H 0.050 0.950 23 H 0.084 0.916 24 H 0.132 0.868 25 H 0.218 0.782 26 H 0.144 0.856 27 H 0.401 0.599 28 H 0.051 0.949 29 H 0.052 0.948 30 H 0.057 0.943 31 H 0.058 0.942 32 H -0.003 1.003 33 H -0.003 1.003 34 H 0.264 0.736 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.211 -21.419 3.971 22.398 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.217 4.217 2 C 0.008 3.992 3 N -0.163 5.163 4 C -0.056 4.056 5 C -0.372 4.372 6 C 0.062 3.938 7 N -0.364 5.364 8 C 0.031 3.969 9 C -0.142 4.142 10 C -0.010 4.010 11 C -0.582 4.582 12 H 0.078 0.922 13 C -0.198 4.198 14 N -0.572 5.572 15 Si 0.789 3.211 16 H -0.198 1.198 17 H -0.207 1.207 18 H -0.188 1.188 19 N -0.228 5.228 20 H 0.061 0.939 21 H 0.118 0.882 22 H 0.070 0.930 23 H 0.102 0.898 24 H 0.150 0.850 25 H 0.234 0.766 26 H 0.162 0.838 27 H 0.236 0.764 28 H 0.070 0.930 29 H 0.070 0.930 30 H 0.076 0.924 31 H 0.076 0.924 32 H 0.016 0.984 33 H 0.016 0.984 34 H 0.073 0.927 Dipole moment (debyes) X Y Z Total from point charges -5.820 -21.916 3.379 22.926 hybrid contribution 0.416 1.590 -0.164 1.651 sum -5.404 -20.326 3.215 21.277 Atomic orbital electron populations 1.22004 0.94259 1.03669 1.01803 1.21973 0.95849 0.75904 1.05432 1.48553 1.36557 1.10303 1.20905 1.23000 0.93239 0.93455 0.95923 1.21350 1.13923 0.98849 1.03033 1.19626 0.94385 0.87238 0.92569 1.43831 1.53823 1.06250 1.32473 1.21133 0.94597 0.83808 0.97344 1.21573 1.00389 0.93665 0.98569 1.18909 0.94423 0.92248 0.95389 1.21690 1.27398 0.96591 1.12559 0.92178 1.25965 0.94785 1.02140 0.96923 1.70091 1.30995 1.26481 1.29658 0.85450 0.77748 0.78603 0.79261 1.19805 1.20719 1.18834 1.77261 1.30131 0.97221 1.18180 0.93894 0.88195 0.93037 0.89750 0.84988 0.76587 0.83828 0.76404 0.93042 0.93020 0.92381 0.92367 0.98450 0.98434 0.92730 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.25 10.10 71.98 0.73 -1.52 16 2 C 0.13 1.74 7.23 86.38 0.62 2.36 16 3 N -0.38 -8.93 3.68 -348.09 -1.28 -10.21 16 4 C 0.09 1.94 11.44 83.52 0.96 2.89 16 5 C -0.34 -9.70 10.11 22.11 0.22 -9.48 16 6 C 0.32 10.66 8.16 133.39 1.09 11.75 16 7 N -0.72 -24.42 5.77 -343.93 -1.98 -26.41 16 8 C 0.16 5.60 5.60 86.38 0.48 6.09 16 9 C -0.10 -4.28 5.27 30.59 0.16 -4.12 16 10 C 0.03 1.47 4.97 29.85 0.15 1.62 16 11 C -0.54 -31.14 9.11 25.60 0.23 -30.91 16 12 H 0.06 3.30 7.74 -2.91 -0.02 3.28 16 13 C 0.00 -0.02 5.46 84.66 0.46 0.44 16 14 N -0.93 -56.82 13.29 21.45 0.28 -56.54 16 15 Si 0.96 44.50 29.54 68.60 2.03 46.52 16 16 H -0.27 -12.16 7.11 99.48 0.71 -11.45 16 17 H -0.28 -12.68 7.11 99.48 0.71 -11.98 16 18 H -0.26 -11.67 7.11 99.48 0.71 -10.96 16 19 N -0.39 -12.69 12.43 -54.55 -0.68 -13.36 16 20 H 0.04 0.84 8.14 -2.38 -0.02 0.83 16 21 H 0.10 0.79 8.14 -2.39 -0.02 0.77 16 22 H 0.05 0.81 8.14 -2.39 -0.02 0.79 16 23 H 0.08 1.07 8.14 -2.39 -0.02 1.05 16 24 H 0.13 0.73 8.07 -2.38 -0.02 0.72 16 25 H 0.22 2.25 8.06 -2.91 -0.02 2.22 16 26 H 0.14 3.96 7.90 -2.91 -0.02 3.94 16 27 H 0.40 12.93 8.60 -92.71 -0.80 12.14 16 28 H 0.05 1.87 8.14 -2.39 -0.02 1.85 16 29 H 0.05 1.88 8.14 -2.38 -0.02 1.86 16 30 H 0.06 2.34 8.14 -2.39 -0.02 2.32 16 31 H 0.06 2.34 8.14 -2.39 -0.02 2.32 16 32 H 0.00 -0.16 8.14 -2.39 -0.02 -0.18 16 33 H 0.00 -0.15 8.14 -2.39 -0.02 -0.17 16 34 H 0.26 15.08 8.31 -92.71 -0.77 14.31 16 Total: -1.00 -70.97 293.56 3.75 -67.23 By element: Atomic # 1 Polarization: 13.37 SS G_CDS: 0.27 Total: 13.64 kcal Atomic # 6 Polarization: -25.98 SS G_CDS: 5.11 Total: -20.87 kcal Atomic # 7 Polarization: -102.86 SS G_CDS: -3.66 Total: -106.52 kcal Atomic # 14 Polarization: 44.50 SS G_CDS: 2.03 Total: 46.52 kcal Total: -70.97 3.75 -67.23 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000300867053.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 110.706 kcal (2) G-P(sol) polarization free energy of solvation -70.973 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 39.733 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.747 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.226 kcal (6) G-S(sol) free energy of system = (1) + (5) 43.480 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.26 seconds