Wall clock time and date at job start Mon Mar 30 2020 02:53:13 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31622 * 1 3 3 Si 1.86798 * 120.00022 * 2 1 4 4 H 1.48498 * 109.47022 * 269.99553 * 3 2 1 5 5 H 1.48496 * 109.47387 * 29.99470 * 3 2 1 6 6 H 1.48503 * 109.46986 * 149.99622 * 3 2 1 7 7 C 1.38807 * 119.99641 * 179.97438 * 2 1 3 8 8 H 1.07998 * 120.00546 * 0.02562 * 7 2 1 9 9 N 1.36945 * 119.99711 * 180.02562 * 7 2 1 10 10 C 1.46502 * 119.99855 * 180.02562 * 9 7 2 11 11 H 1.09005 * 110.07506 * 33.52825 * 10 9 7 12 12 C 1.54345 * 110.05217 * 272.06232 * 10 9 7 13 13 C 1.54912 * 104.20113 * 217.18211 * 12 10 9 14 14 C 1.54951 * 102.78515 * 37.78956 * 13 12 10 15 15 C 1.53593 * 110.05171 * 154.99732 * 10 9 7 16 16 C 1.52676 * 110.03130 * 0.19109 * 15 10 9 17 17 C 1.53067 * 109.47409 * 179.25029 * 16 15 10 18 18 C 1.52987 * 109.44273 * 59.42430 * 17 16 15 19 19 C 1.53005 * 109.55315 * 299.71455 * 18 17 16 20 20 C 1.52677 * 110.01421 * 238.41586 * 15 10 9 21 21 H 0.97003 * 120.00060 * 0.02562 * 1 2 3 22 22 H 0.96999 * 120.00042 * 359.97438 * 9 7 2 23 23 H 1.08998 * 110.48513 * 98.50028 * 12 10 9 24 24 H 1.08997 * 110.59540 * 335.91401 * 12 10 9 25 25 H 1.09007 * 110.75059 * 279.46817 * 13 12 10 26 26 H 1.09001 * 110.90607 * 156.19061 * 13 12 10 27 27 H 1.09003 * 110.49906 * 203.62280 * 14 13 12 28 28 H 1.08997 * 110.49682 * 80.93965 * 14 13 12 29 29 H 1.09002 * 109.47296 * 299.25226 * 16 15 10 30 30 H 1.09001 * 109.47113 * 59.25294 * 16 15 10 31 31 H 1.08996 * 109.47318 * 179.41668 * 17 16 15 32 32 H 1.08997 * 109.47306 * 299.43156 * 17 16 15 33 33 H 1.08998 * 109.46098 * 179.69273 * 18 17 16 34 34 H 1.09003 * 109.45595 * 59.74323 * 18 17 16 35 35 H 1.08998 * 109.47580 * 300.30640 * 19 18 17 36 36 H 1.08996 * 109.48552 * 180.28095 * 19 18 17 37 37 H 1.09004 * 109.47496 * 300.77252 * 20 15 10 38 38 H 1.09007 * 109.47447 * 60.77200 * 20 15 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6177 0.0000 4 1 2.4978 2.0463 -1.4001 5 1 1.4477 2.6527 0.6999 6 1 3.5477 1.4401 0.7001 7 6 2.0102 -1.2021 0.0005 8 1 1.4702 -2.1375 0.0005 9 7 3.3796 -1.2022 0.0011 10 6 4.1121 -2.4709 0.0011 11 1 3.5602 -3.2216 -0.5648 12 6 4.3309 -2.9557 1.4500 13 6 5.7452 -3.5875 1.4298 14 6 6.5291 -2.6434 0.4837 15 6 5.5081 -2.2731 -0.6082 16 6 5.6975 -0.8149 -1.0189 17 6 7.0985 -0.6282 -1.6068 18 6 7.2654 -1.5395 -2.8243 19 6 7.0878 -2.9988 -2.3998 20 6 5.6867 -3.1918 -1.8144 21 1 -0.4850 0.8401 -0.0004 22 1 3.8646 -0.3621 0.0007 23 1 3.5835 -3.7019 1.7196 24 1 4.2981 -2.1161 2.1443 25 1 5.7107 -4.5988 1.0245 26 1 6.1854 -3.5876 2.4270 27 1 7.3827 -3.1625 0.0478 28 1 6.8558 -1.7518 1.0189 29 1 4.9511 -0.5482 -1.7671 30 1 5.5817 -0.1734 -0.1454 31 1 7.2300 0.4105 -1.9096 32 1 7.8450 -0.8852 -0.8554 33 1 8.2610 -1.4028 -3.2464 34 1 6.5156 -1.2854 -3.5735 35 1 7.8343 -3.2517 -1.6470 36 1 7.2119 -3.6473 -3.2670 37 1 5.5630 -4.2290 -1.5028 38 1 4.9403 -2.9482 -2.5705 RHF calculation, no. of doubly occupied orbitals= 43 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000306338757.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:53:13 Heat of formation + Delta-G solvation = -11.255915 kcal Electronic energy + Delta-G solvation = -16539.930600 eV Core-core repulsion = 14188.329351 eV Total energy + Delta-G solvation = -2351.601248 eV No. of doubly occupied orbitals = 43 Molecular weight (most abundant/longest-lived isotopes) = 223.163 amu Computer time = 0.30 seconds Orbital eigenvalues (eV) -39.93711 -35.61234 -33.54418 -31.11543 -30.42474 -29.64292 -26.99139 -24.12124 -22.97497 -21.95069 -21.16303 -19.28983 -17.84336 -17.43252 -15.44012 -15.28156 -14.52111 -14.29397 -13.74723 -13.57077 -13.33171 -12.73511 -12.47159 -12.27297 -12.09743 -11.78977 -11.31856 -11.03165 -10.91474 -10.82891 -10.72719 -10.56428 -10.32889 -10.26190 -10.02666 -9.78800 -9.71619 -9.49828 -9.40187 -8.83095 -7.16671 -5.72149 -3.05632 3.39095 3.41781 3.47059 4.62798 4.84199 4.91508 4.96673 5.20034 5.29860 5.32737 5.48932 5.59881 5.64588 5.72868 5.80009 5.83740 5.85114 5.89433 5.99697 6.06863 6.17409 6.19557 6.22312 6.32826 6.37682 6.40946 6.49076 6.50739 6.56141 6.67552 6.78103 6.84494 6.93595 7.13145 8.07421 8.48292 9.28097 10.00960 10.21854 11.46784 Molecular weight = 223.16amu Principal moments of inertia in cm(-1) A = 0.028654 B = 0.010251 C = 0.008757 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 976.933822 B = 2730.750332 C = 3196.681370 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.937 5.937 2 C 0.002 3.998 3 Si 0.878 3.122 4 H -0.284 1.284 5 H -0.292 1.292 6 H -0.278 1.278 7 C -0.238 4.238 8 H 0.089 0.911 9 N -0.748 5.748 10 C 0.186 3.814 11 H 0.058 0.942 12 C -0.141 4.141 13 C -0.125 4.125 14 C -0.114 4.114 15 C -0.065 4.065 16 C -0.107 4.107 17 C -0.120 4.120 18 C -0.117 4.117 19 C -0.119 4.119 20 C -0.103 4.103 21 H 0.258 0.742 22 H 0.365 0.635 23 H 0.055 0.945 24 H 0.065 0.935 25 H 0.059 0.941 26 H 0.054 0.946 27 H 0.062 0.938 28 H 0.060 0.940 29 H 0.071 0.929 30 H 0.060 0.940 31 H 0.055 0.945 32 H 0.059 0.941 33 H 0.053 0.947 34 H 0.060 0.940 35 H 0.062 0.938 36 H 0.055 0.945 37 H 0.059 0.941 38 H 0.064 0.936 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 16.079 -5.138 -2.286 17.034 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.585 5.585 2 C -0.193 4.193 3 Si 0.709 3.291 4 H -0.211 1.211 5 H -0.218 1.218 6 H -0.204 1.204 7 C -0.368 4.368 8 H 0.106 0.894 9 N -0.393 5.393 10 C 0.076 3.924 11 H 0.076 0.924 12 C -0.182 4.182 13 C -0.163 4.163 14 C -0.151 4.151 15 C -0.066 4.066 16 C -0.144 4.144 17 C -0.157 4.157 18 C -0.155 4.155 19 C -0.157 4.157 20 C -0.140 4.140 21 H 0.068 0.932 22 H 0.201 0.799 23 H 0.074 0.926 24 H 0.083 0.917 25 H 0.078 0.922 26 H 0.073 0.927 27 H 0.080 0.920 28 H 0.079 0.921 29 H 0.089 0.911 30 H 0.078 0.922 31 H 0.073 0.927 32 H 0.077 0.923 33 H 0.072 0.928 34 H 0.079 0.921 35 H 0.080 0.920 36 H 0.074 0.926 37 H 0.078 0.922 38 H 0.082 0.918 Dipole moment (debyes) X Y Z Total from point charges 15.811 -5.178 -2.303 16.796 hybrid contribution 0.438 1.279 0.101 1.356 sum 16.249 -3.899 -2.202 16.855 Atomic orbital electron populations 1.69700 1.05050 1.25625 1.58128 1.24643 0.95186 0.97010 1.02463 0.86639 0.79274 0.85355 0.77826 1.21054 1.21799 1.20380 1.19134 0.80930 0.94580 1.42127 0.89355 1.43124 1.03869 1.02352 1.89907 1.20832 0.89732 0.88939 0.92848 0.92436 1.23105 0.94739 0.99928 1.00391 1.22476 0.96910 0.98409 0.98520 1.22488 0.97340 0.98985 0.96332 1.21161 0.95979 0.94819 0.94644 1.21528 0.96105 0.96094 1.00706 1.21587 0.97925 0.98780 0.97434 1.21504 1.00738 0.95327 0.97920 1.21608 0.97821 0.96245 0.99979 1.21528 0.96432 0.98897 0.97188 0.93193 0.79945 0.92638 0.91665 0.92235 0.92686 0.91953 0.92123 0.91077 0.92178 0.92657 0.92260 0.92824 0.92105 0.91988 0.92648 0.92201 0.91757 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.94 -29.81 13.97 55.49 0.78 -29.03 16 2 C 0.00 0.07 5.50 -17.43 -0.10 -0.03 16 3 Si 0.88 22.45 27.74 -169.99 -4.71 17.74 16 4 H -0.28 -7.17 7.11 56.52 0.40 -6.77 16 5 H -0.29 -7.56 7.11 56.52 0.40 -7.15 16 6 H -0.28 -6.70 6.52 56.52 0.37 -6.33 16 7 C -0.24 -6.77 10.44 -15.06 -0.16 -6.92 16 8 H 0.09 2.70 8.06 -52.49 -0.42 2.28 16 9 N -0.75 -17.84 4.33 -52.44 -0.23 -18.06 16 10 C 0.19 3.65 3.19 -66.92 -0.21 3.43 16 11 H 0.06 1.18 7.61 -51.93 -0.40 0.79 16 12 C -0.14 -2.54 6.54 -25.02 -0.16 -2.70 16 13 C -0.13 -1.78 6.91 -24.69 -0.17 -1.95 16 14 C -0.11 -1.58 4.65 -25.18 -0.12 -1.70 16 15 C -0.07 -1.03 0.63 -154.01 -0.10 -1.13 16 16 C -0.11 -1.76 3.23 -26.86 -0.09 -1.84 16 17 C -0.12 -1.59 5.72 -26.70 -0.15 -1.74 16 18 C -0.12 -1.42 5.91 -26.74 -0.16 -1.58 16 19 C -0.12 -1.41 5.71 -26.69 -0.15 -1.56 16 20 C -0.10 -1.45 4.47 -26.86 -0.12 -1.57 16 21 H 0.26 7.84 8.31 -40.82 -0.34 7.50 16 22 H 0.36 8.54 2.86 -40.82 -0.12 8.43 16 23 H 0.05 1.00 8.14 -51.93 -0.42 0.58 16 24 H 0.06 1.27 8.06 -51.93 -0.42 0.86 16 25 H 0.06 0.78 8.14 -51.92 -0.42 0.36 16 26 H 0.05 0.72 8.14 -51.93 -0.42 0.29 16 27 H 0.06 0.76 5.84 -51.93 -0.30 0.46 16 28 H 0.06 0.86 7.67 -51.93 -0.40 0.46 16 29 H 0.07 1.32 7.75 -51.93 -0.40 0.92 16 30 H 0.06 1.07 6.87 -51.93 -0.36 0.71 16 31 H 0.05 0.70 8.14 -51.93 -0.42 0.28 16 32 H 0.06 0.73 7.20 -51.93 -0.37 0.36 16 33 H 0.05 0.56 8.14 -51.93 -0.42 0.14 16 34 H 0.06 0.77 8.14 -51.93 -0.42 0.35 16 35 H 0.06 0.69 6.19 -51.93 -0.32 0.37 16 36 H 0.05 0.59 8.14 -51.93 -0.42 0.17 16 37 H 0.06 0.80 8.14 -51.93 -0.42 0.37 16 38 H 0.06 0.99 8.14 -51.93 -0.42 0.57 16 LS Contribution 279.33 15.07 4.21 4.21 Total: -1.00 -30.33 279.33 -8.12 -38.45 By element: Atomic # 1 Polarization: 12.45 SS G_CDS: -6.48 Total: 5.97 kcal Atomic # 6 Polarization: -17.60 SS G_CDS: -1.68 Total: -19.28 kcal Atomic # 7 Polarization: -47.64 SS G_CDS: 0.55 Total: -47.09 kcal Atomic # 14 Polarization: 22.45 SS G_CDS: -4.71 Total: 17.74 kcal Total LS contribution 4.21 Total: 4.21 kcal Total: -30.33 -8.12 -38.45 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000306338757.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 27.196 kcal (2) G-P(sol) polarization free energy of solvation -30.330 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -3.133 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.123 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.452 kcal (6) G-S(sol) free energy of system = (1) + (5) -11.256 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.30 seconds