Wall clock time and date at job start Mon Mar 30 2020 02:53:12 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31622 * 1 3 3 Si 1.86798 * 120.00022 * 2 1 4 4 H 1.48498 * 109.47022 * 269.99553 * 3 2 1 5 5 H 1.48496 * 109.47387 * 29.99470 * 3 2 1 6 6 H 1.48503 * 109.46986 * 149.99622 * 3 2 1 7 7 C 1.38807 * 119.99641 * 179.97438 * 2 1 3 8 8 H 1.07998 * 120.00546 * 0.02562 * 7 2 1 9 9 N 1.36945 * 119.99711 * 180.02562 * 7 2 1 10 10 C 1.46502 * 119.99855 * 180.02562 * 9 7 2 11 11 H 1.09005 * 110.07506 * 33.52825 * 10 9 7 12 12 C 1.54345 * 110.05217 * 272.06232 * 10 9 7 13 13 C 1.54912 * 104.20113 * 217.18211 * 12 10 9 14 14 C 1.54951 * 102.78515 * 37.78956 * 13 12 10 15 15 C 1.53593 * 110.05171 * 154.99732 * 10 9 7 16 16 C 1.52676 * 110.03130 * 0.19109 * 15 10 9 17 17 C 1.53067 * 109.47409 * 179.25029 * 16 15 10 18 18 C 1.52987 * 109.44273 * 59.42430 * 17 16 15 19 19 C 1.53005 * 109.55315 * 299.71455 * 18 17 16 20 20 C 1.52677 * 110.01421 * 238.41586 * 15 10 9 21 21 H 0.97003 * 120.00060 * 0.02562 * 1 2 3 22 22 H 0.96999 * 120.00042 * 359.97438 * 9 7 2 23 23 H 1.08998 * 110.48513 * 98.50028 * 12 10 9 24 24 H 1.08997 * 110.59540 * 335.91401 * 12 10 9 25 25 H 1.09007 * 110.75059 * 279.46817 * 13 12 10 26 26 H 1.09001 * 110.90607 * 156.19061 * 13 12 10 27 27 H 1.09003 * 110.49906 * 203.62280 * 14 13 12 28 28 H 1.08997 * 110.49682 * 80.93965 * 14 13 12 29 29 H 1.09002 * 109.47296 * 299.25226 * 16 15 10 30 30 H 1.09001 * 109.47113 * 59.25294 * 16 15 10 31 31 H 1.08996 * 109.47318 * 179.41668 * 17 16 15 32 32 H 1.08997 * 109.47306 * 299.43156 * 17 16 15 33 33 H 1.08998 * 109.46098 * 179.69273 * 18 17 16 34 34 H 1.09003 * 109.45595 * 59.74323 * 18 17 16 35 35 H 1.08998 * 109.47580 * 300.30640 * 19 18 17 36 36 H 1.08996 * 109.48552 * 180.28095 * 19 18 17 37 37 H 1.09004 * 109.47496 * 300.77252 * 20 15 10 38 38 H 1.09007 * 109.47447 * 60.77200 * 20 15 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6177 0.0000 4 1 2.4978 2.0463 -1.4001 5 1 1.4477 2.6527 0.6999 6 1 3.5477 1.4401 0.7001 7 6 2.0102 -1.2021 0.0005 8 1 1.4702 -2.1375 0.0005 9 7 3.3796 -1.2022 0.0011 10 6 4.1121 -2.4709 0.0011 11 1 3.5602 -3.2216 -0.5648 12 6 4.3309 -2.9557 1.4500 13 6 5.7452 -3.5875 1.4298 14 6 6.5291 -2.6434 0.4837 15 6 5.5081 -2.2731 -0.6082 16 6 5.6975 -0.8149 -1.0189 17 6 7.0985 -0.6282 -1.6068 18 6 7.2654 -1.5395 -2.8243 19 6 7.0878 -2.9988 -2.3998 20 6 5.6867 -3.1918 -1.8144 21 1 -0.4850 0.8401 -0.0004 22 1 3.8646 -0.3621 0.0007 23 1 3.5835 -3.7019 1.7196 24 1 4.2981 -2.1161 2.1443 25 1 5.7107 -4.5988 1.0245 26 1 6.1854 -3.5876 2.4270 27 1 7.3827 -3.1625 0.0478 28 1 6.8558 -1.7518 1.0189 29 1 4.9511 -0.5482 -1.7671 30 1 5.5817 -0.1734 -0.1454 31 1 7.2300 0.4105 -1.9096 32 1 7.8450 -0.8852 -0.8554 33 1 8.2610 -1.4028 -3.2464 34 1 6.5156 -1.2854 -3.5735 35 1 7.8343 -3.2517 -1.6470 36 1 7.2119 -3.6473 -3.2670 37 1 5.5630 -4.2290 -1.5028 38 1 4.9403 -2.9482 -2.5705 RHF calculation, no. of doubly occupied orbitals= 43 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000306338757.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:53:12 Heat of formation + Delta-G solvation = -28.724995 kcal Electronic energy + Delta-G solvation = -16540.688116 eV Core-core repulsion = 14188.329351 eV Total energy + Delta-G solvation = -2352.358764 eV No. of doubly occupied orbitals = 43 Molecular weight (most abundant/longest-lived isotopes) = 223.163 amu Computer time = 0.33 seconds Orbital eigenvalues (eV) -41.21802 -36.98255 -35.35472 -33.10053 -31.61250 -30.86681 -28.59404 -25.61785 -24.53509 -23.33694 -22.27814 -20.73642 -19.79322 -18.77249 -16.93984 -16.77600 -16.12516 -15.55036 -15.19605 -15.01574 -14.71127 -14.42718 -13.92106 -13.66827 -13.48527 -13.09589 -12.92737 -12.69054 -12.25449 -12.17618 -12.05599 -12.03751 -11.83315 -11.81015 -11.48465 -11.36548 -11.04355 -10.91538 -10.74142 -10.70950 -9.24915 -8.03744 -5.34217 1.31368 1.34813 1.41805 2.45094 3.26982 3.57412 3.65835 3.81368 3.93490 4.13330 4.21805 4.34863 4.47292 4.52597 4.63200 4.69019 4.69843 4.72921 4.77557 4.83770 4.95534 5.02617 5.12456 5.17185 5.21520 5.28228 5.32127 5.35351 5.36336 5.47314 5.52340 5.58167 5.64919 5.74073 5.79294 6.22555 7.08741 7.88257 8.06857 9.18626 Molecular weight = 223.16amu Principal moments of inertia in cm(-1) A = 0.028654 B = 0.010251 C = 0.008757 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 976.933822 B = 2730.750332 C = 3196.681370 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.986 5.986 2 C -0.066 4.066 3 Si 0.947 3.053 4 H -0.277 1.277 5 H -0.294 1.294 6 H -0.256 1.256 7 C -0.224 4.224 8 H 0.052 0.948 9 N -0.750 5.750 10 C 0.172 3.828 11 H 0.037 0.963 12 C -0.142 4.142 13 C -0.113 4.113 14 C -0.106 4.106 15 C -0.060 4.060 16 C -0.108 4.108 17 C -0.114 4.114 18 C -0.118 4.118 19 C -0.113 4.113 20 C -0.103 4.103 21 H 0.257 0.743 22 H 0.368 0.632 23 H 0.044 0.956 24 H 0.046 0.954 25 H 0.075 0.925 26 H 0.074 0.926 27 H 0.093 0.907 28 H 0.062 0.938 29 H 0.040 0.960 30 H 0.043 0.957 31 H 0.060 0.940 32 H 0.077 0.923 33 H 0.078 0.922 34 H 0.046 0.954 35 H 0.080 0.920 36 H 0.070 0.930 37 H 0.068 0.932 38 H 0.040 0.960 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 19.942 -5.354 -2.357 20.782 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.637 5.637 2 C -0.257 4.257 3 Si 0.774 3.226 4 H -0.203 1.203 5 H -0.220 1.220 6 H -0.181 1.181 7 C -0.355 4.355 8 H 0.071 0.929 9 N -0.396 5.396 10 C 0.064 3.936 11 H 0.055 0.945 12 C -0.182 4.182 13 C -0.151 4.151 14 C -0.144 4.144 15 C -0.061 4.061 16 C -0.146 4.146 17 C -0.151 4.151 18 C -0.155 4.155 19 C -0.150 4.150 20 C -0.140 4.140 21 H 0.065 0.935 22 H 0.205 0.795 23 H 0.063 0.937 24 H 0.065 0.935 25 H 0.094 0.906 26 H 0.093 0.907 27 H 0.111 0.889 28 H 0.081 0.919 29 H 0.059 0.941 30 H 0.062 0.938 31 H 0.078 0.922 32 H 0.096 0.904 33 H 0.097 0.903 34 H 0.065 0.935 35 H 0.099 0.901 36 H 0.089 0.911 37 H 0.087 0.913 38 H 0.058 0.942 Dipole moment (debyes) X Y Z Total from point charges 19.732 -5.428 -2.373 20.602 hybrid contribution -0.838 1.234 0.115 1.496 sum 18.894 -4.195 -2.258 19.485 Atomic orbital electron populations 1.69882 1.06996 1.26452 1.60398 1.25434 0.96072 1.00932 1.03275 0.85531 0.78617 0.80210 0.78205 1.20315 1.22040 1.18074 1.19093 0.83065 0.93185 1.40183 0.92950 1.43143 1.02205 1.04304 1.89907 1.21161 0.91598 0.86628 0.94227 0.94472 1.22989 0.97619 0.99274 0.98316 1.22437 0.93758 0.98907 1.00026 1.22479 0.97354 0.99262 0.95274 1.21102 0.93830 0.95136 0.96018 1.21495 0.97762 0.96027 0.99311 1.21558 0.95714 0.99609 0.98254 1.21524 1.01725 0.95201 0.97073 1.21586 0.96058 0.96349 1.00973 1.21519 0.97810 0.98826 0.95870 0.93463 0.79492 0.93749 0.93496 0.90619 0.90707 0.88916 0.91946 0.94137 0.93800 0.92172 0.90414 0.90321 0.93521 0.90133 0.91085 0.91292 0.94157 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.99 -65.17 13.97 21.65 0.30 -64.86 16 2 C -0.07 -4.05 5.50 84.86 0.47 -3.58 16 3 Si 0.95 47.28 27.74 68.60 1.90 49.18 16 4 H -0.28 -13.44 7.11 99.48 0.71 -12.73 16 5 H -0.29 -14.72 7.11 99.48 0.71 -14.02 16 6 H -0.26 -11.69 6.52 99.48 0.65 -11.04 16 7 C -0.22 -13.29 10.44 84.03 0.88 -12.41 16 8 H 0.05 3.41 8.06 -2.91 -0.02 3.39 16 9 N -0.75 -36.56 4.33 -319.83 -1.39 -37.95 16 10 C 0.17 6.81 3.19 45.65 0.15 6.95 16 11 H 0.04 1.60 7.61 -2.38 -0.02 1.58 16 12 C -0.14 -5.05 6.54 31.70 0.21 -4.84 16 13 C -0.11 -2.86 6.91 31.91 0.22 -2.64 16 14 C -0.11 -2.55 4.65 31.60 0.15 -2.40 16 15 C -0.06 -1.80 0.63 -51.86 -0.03 -1.84 16 16 C -0.11 -3.41 3.23 30.51 0.10 -3.32 16 17 C -0.11 -2.65 5.72 30.61 0.18 -2.47 16 18 C -0.12 -2.43 5.91 30.59 0.18 -2.25 16 19 C -0.11 -2.20 5.71 30.62 0.17 -2.03 16 20 C -0.10 -2.69 4.47 30.51 0.14 -2.55 16 21 H 0.26 16.14 8.31 -92.71 -0.77 15.37 16 22 H 0.37 17.30 2.86 -92.71 -0.27 17.03 16 23 H 0.04 1.63 8.14 -2.39 -0.02 1.61 16 24 H 0.05 1.82 8.06 -2.39 -0.02 1.80 16 25 H 0.08 1.70 8.14 -2.38 -0.02 1.68 16 26 H 0.07 1.65 8.14 -2.39 -0.02 1.63 16 27 H 0.09 1.73 5.84 -2.39 -0.01 1.72 16 28 H 0.06 1.51 7.67 -2.39 -0.02 1.49 16 29 H 0.04 1.50 7.75 -2.39 -0.02 1.48 16 30 H 0.04 1.50 6.87 -2.39 -0.02 1.49 16 31 H 0.06 1.35 8.14 -2.39 -0.02 1.33 16 32 H 0.08 1.55 7.20 -2.39 -0.02 1.54 16 33 H 0.08 1.28 8.14 -2.39 -0.02 1.26 16 34 H 0.05 1.09 8.14 -2.39 -0.02 1.07 16 35 H 0.08 1.32 6.19 -2.39 -0.01 1.31 16 36 H 0.07 1.22 8.14 -2.39 -0.02 1.20 16 37 H 0.07 1.67 8.14 -2.38 -0.02 1.65 16 38 H 0.04 1.23 8.14 -2.38 -0.02 1.21 16 Total: -1.00 -68.28 279.33 4.31 -63.97 By element: Atomic # 1 Polarization: 22.35 SS G_CDS: 0.69 Total: 23.04 kcal Atomic # 6 Polarization: -36.18 SS G_CDS: 2.80 Total: -33.38 kcal Atomic # 7 Polarization: -101.73 SS G_CDS: -1.08 Total: -102.81 kcal Atomic # 14 Polarization: 47.28 SS G_CDS: 1.90 Total: 49.18 kcal Total: -68.28 4.31 -63.97 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000306338757.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 35.246 kcal (2) G-P(sol) polarization free energy of solvation -68.279 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -33.033 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.308 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.971 kcal (6) G-S(sol) free energy of system = (1) + (5) -28.725 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.33 seconds