Wall clock time and date at job start Mon Mar 30 2020 02:53:15 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31617 * 1 3 3 Si 1.86803 * 120.00125 * 2 1 4 4 H 1.48494 * 109.47228 * 179.97438 * 3 2 1 5 5 H 1.48501 * 109.46793 * 299.99926 * 3 2 1 6 6 H 1.48500 * 109.47000 * 60.00018 * 3 2 1 7 7 C 1.38815 * 119.99916 * 179.97438 * 2 1 3 8 8 H 1.08004 * 119.99568 * 179.72333 * 7 2 1 9 9 N 1.36929 * 120.00031 * 0.02562 * 7 2 1 10 10 C 1.46506 * 119.99807 * 179.97438 * 9 7 2 11 11 H 1.08999 * 110.03681 * 326.44180 * 10 9 7 12 12 C 1.54346 * 110.04733 * 87.93845 * 10 9 7 13 13 C 1.54923 * 104.20491 * 95.70760 * 12 10 9 14 14 C 1.54949 * 102.77657 * 37.79264 * 13 12 10 15 15 C 1.53602 * 110.05256 * 204.99646 * 10 9 7 16 16 C 1.52664 * 110.01570 * 121.63504 * 15 10 9 17 17 C 1.53065 * 109.50451 * 179.37469 * 16 15 10 18 18 C 1.52993 * 109.44856 * 59.40683 * 17 16 15 19 19 C 1.53004 * 109.52656 * 299.69049 * 18 17 16 20 20 C 1.52684 * 109.98508 * 359.87894 * 15 10 9 21 21 H 0.97000 * 120.00284 * 359.97438 * 1 2 3 22 22 H 0.96999 * 120.00117 * 359.97438 * 9 7 2 23 23 H 1.09004 * 110.47968 * 214.37823 * 12 10 9 24 24 H 1.08993 * 110.48885 * 337.02568 * 12 10 9 25 25 H 1.08997 * 110.74579 * 279.47086 * 13 12 10 26 26 H 1.08996 * 110.75282 * 156.11309 * 13 12 10 27 27 H 1.09001 * 110.50074 * 203.60912 * 14 13 12 28 28 H 1.09001 * 110.61793 * 80.98189 * 14 13 12 29 29 H 1.08993 * 109.47234 * 299.38342 * 16 15 10 30 30 H 1.08997 * 109.46874 * 59.36928 * 16 15 10 31 31 H 1.09001 * 109.47376 * 299.40864 * 17 16 15 32 32 H 1.09007 * 109.47222 * 179.40361 * 17 16 15 33 33 H 1.08997 * 109.46440 * 179.67030 * 18 17 16 34 34 H 1.09002 * 109.46486 * 59.70616 * 18 17 16 35 35 H 1.09001 * 109.47798 * 300.33846 * 19 18 17 36 36 H 1.09002 * 109.47677 * 180.30907 * 19 18 17 37 37 H 1.09004 * 109.46478 * 300.67445 * 20 15 10 38 38 H 1.08999 * 109.47135 * 60.66471 * 20 15 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6177 0.0000 4 1 3.7102 1.3464 0.0006 5 1 1.8914 2.3964 -1.2125 6 1 1.8915 2.3964 1.2125 7 6 2.0102 -1.2022 0.0005 8 1 3.0903 -1.2021 -0.0040 9 7 1.3256 -2.3880 0.0005 10 6 2.0581 -3.6568 0.0005 11 1 2.9839 -3.5535 -0.5655 12 6 2.3679 -4.0889 1.4495 13 6 1.2194 -5.0645 1.8090 14 6 0.9967 -5.8351 0.4833 15 6 1.1889 -4.7668 -0.6092 16 6 1.8961 -5.3815 -1.8145 17 6 1.0273 -6.4959 -2.4031 18 6 -0.3234 -5.9174 -2.8294 19 6 -1.0303 -5.3182 -1.6119 20 6 -0.1676 -4.2002 -1.0215 21 1 -0.4850 0.8400 0.0004 22 1 0.3556 -2.3880 0.0005 23 1 3.3303 -4.5984 1.4981 24 1 2.3578 -3.2260 2.1154 25 1 0.3212 -4.5159 2.0924 26 1 1.5249 -5.7444 2.6042 27 1 -0.0131 -6.2436 0.4441 28 1 1.7338 -6.6305 0.3732 29 1 2.0617 -4.6130 -2.5694 30 1 2.8545 -5.7954 -1.5012 31 1 0.8705 -7.2697 -1.6516 32 1 1.5279 -6.9273 -3.2700 33 1 -0.9400 -6.7096 -3.2539 34 1 -0.1659 -5.1399 -3.5769 35 1 -1.1828 -6.0943 -0.8617 36 1 -1.9948 -4.9113 -1.9154 37 1 -0.6661 -3.7795 -0.1482 38 1 -0.0235 -3.4197 -1.7686 RHF calculation, no. of doubly occupied orbitals= 43 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000306338758.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:53:15 Heat of formation + Delta-G solvation = -15.246900 kcal Electronic energy + Delta-G solvation = -16488.872916 eV Core-core repulsion = 14137.098605 eV Total energy + Delta-G solvation = -2351.774310 eV No. of doubly occupied orbitals = 43 Molecular weight (most abundant/longest-lived isotopes) = 223.163 amu Computer time = 0.28 seconds Orbital eigenvalues (eV) -39.77184 -35.48965 -33.31808 -30.60555 -30.39249 -29.46865 -26.61772 -23.96959 -23.32758 -21.87960 -20.99132 -19.10178 -17.51798 -17.06634 -15.47547 -15.00446 -14.38373 -14.29552 -13.71059 -13.26050 -13.22253 -12.69801 -12.44684 -12.19816 -11.68311 -11.40917 -11.18672 -10.84235 -10.80278 -10.72696 -10.61574 -10.48594 -10.16806 -10.09579 -9.96518 -9.79813 -9.55907 -9.36930 -9.27769 -8.79150 -6.83636 -5.70615 -2.97011 3.46142 3.52142 3.54041 4.64677 4.98364 5.07909 5.11275 5.33707 5.45978 5.48850 5.65255 5.67346 5.81328 5.89311 5.96235 5.98633 6.05553 6.08088 6.15295 6.22234 6.24071 6.31209 6.37457 6.50437 6.52395 6.58967 6.64479 6.70097 6.77132 6.87361 6.94643 7.00802 7.13852 7.26966 7.77992 8.49945 9.60622 10.22388 10.56717 11.52466 Molecular weight = 223.16amu Principal moments of inertia in cm(-1) A = 0.032690 B = 0.008666 C = 0.007873 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 856.337930 B = 3230.401676 C = 3555.392677 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.934 5.934 2 C -0.016 4.016 3 Si 0.903 3.097 4 H -0.281 1.281 5 H -0.293 1.293 6 H -0.293 1.293 7 C -0.233 4.233 8 H 0.068 0.932 9 N -0.722 5.722 10 C 0.181 3.819 11 H 0.047 0.953 12 C -0.146 4.146 13 C -0.120 4.120 14 C -0.114 4.114 15 C -0.063 4.063 16 C -0.103 4.103 17 C -0.116 4.116 18 C -0.117 4.117 19 C -0.122 4.122 20 C -0.099 4.099 21 H 0.253 0.747 22 H 0.388 0.612 23 H 0.046 0.954 24 H 0.069 0.931 25 H 0.063 0.937 26 H 0.050 0.950 27 H 0.061 0.939 28 H 0.057 0.943 29 H 0.061 0.939 30 H 0.056 0.944 31 H 0.058 0.942 32 H 0.052 0.948 33 H 0.051 0.949 34 H 0.059 0.941 35 H 0.058 0.942 36 H 0.055 0.945 37 H 0.065 0.935 38 H 0.073 0.927 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.714 -13.182 -2.132 13.373 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.583 5.583 2 C -0.212 4.212 3 Si 0.735 3.265 4 H -0.207 1.207 5 H -0.220 1.220 6 H -0.220 1.220 7 C -0.365 4.365 8 H 0.086 0.914 9 N -0.365 5.365 10 C 0.070 3.930 11 H 0.065 0.935 12 C -0.187 4.187 13 C -0.158 4.158 14 C -0.152 4.152 15 C -0.064 4.064 16 C -0.141 4.141 17 C -0.154 4.154 18 C -0.154 4.154 19 C -0.159 4.159 20 C -0.136 4.136 21 H 0.063 0.937 22 H 0.225 0.775 23 H 0.064 0.936 24 H 0.087 0.913 25 H 0.082 0.918 26 H 0.068 0.932 27 H 0.079 0.921 28 H 0.075 0.925 29 H 0.080 0.920 30 H 0.074 0.926 31 H 0.077 0.923 32 H 0.071 0.929 33 H 0.070 0.930 34 H 0.078 0.922 35 H 0.076 0.924 36 H 0.074 0.926 37 H 0.084 0.916 38 H 0.092 0.908 Dipole moment (debyes) X Y Z Total from point charges 0.836 -13.022 -2.153 13.225 hybrid contribution 0.183 1.013 0.078 1.032 sum 1.019 -12.009 -2.075 12.229 Atomic orbital electron populations 1.69664 1.05015 1.25319 1.58333 1.24700 0.95475 0.97497 1.03498 0.86165 0.78800 0.84468 0.77094 1.20667 1.22031 1.22026 1.19332 0.91024 0.84384 1.41716 0.91365 1.42785 1.06145 0.99527 1.88087 1.20830 0.93774 0.85990 0.92400 0.93521 1.23128 0.96188 0.98565 1.00793 1.22424 0.99452 0.97612 0.96265 1.22494 1.00598 0.97128 0.94957 1.21170 0.95911 0.95086 0.94225 1.21557 0.97570 0.97451 0.97497 1.21538 0.95969 0.98099 0.99792 1.21502 0.96183 0.99663 0.98089 1.21660 0.98463 0.98611 0.97182 1.21389 0.94173 0.96968 1.01103 0.93718 0.77470 0.93561 0.91266 0.91848 0.93172 0.92055 0.92461 0.92000 0.92561 0.92281 0.92905 0.93018 0.92177 0.92357 0.92610 0.91637 0.90818 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -28.31 13.06 55.49 0.72 -27.58 16 2 C -0.02 -0.47 5.50 -17.43 -0.10 -0.56 16 3 Si 0.90 22.68 29.55 -169.99 -5.02 17.66 16 4 H -0.28 -6.86 7.11 56.52 0.40 -6.46 16 5 H -0.29 -7.41 7.11 56.52 0.40 -7.01 16 6 H -0.29 -7.41 7.11 56.52 0.40 -7.01 16 7 C -0.23 -6.51 9.96 -15.06 -0.15 -6.66 16 8 H 0.07 1.87 7.83 -52.48 -0.41 1.46 16 9 N -0.72 -18.08 4.52 -52.44 -0.24 -18.31 16 10 C 0.18 3.68 3.19 -66.91 -0.21 3.46 16 11 H 0.05 0.99 7.61 -51.93 -0.40 0.59 16 12 C -0.15 -2.73 6.55 -25.01 -0.16 -2.89 16 13 C -0.12 -1.96 6.91 -24.69 -0.17 -2.13 16 14 C -0.11 -1.71 4.66 -25.18 -0.12 -1.82 16 15 C -0.06 -1.06 0.63 -154.01 -0.10 -1.16 16 16 C -0.10 -1.55 4.33 -26.87 -0.12 -1.66 16 17 C -0.12 -1.48 5.72 -26.70 -0.15 -1.64 16 18 C -0.12 -1.53 5.91 -26.73 -0.16 -1.69 16 19 C -0.12 -1.76 5.71 -26.70 -0.15 -1.91 16 20 C -0.10 -1.76 3.36 -26.86 -0.09 -1.85 16 21 H 0.25 7.44 8.31 -40.82 -0.34 7.10 16 22 H 0.39 10.17 5.00 -40.82 -0.20 9.96 16 23 H 0.05 0.78 8.14 -51.93 -0.42 0.35 16 24 H 0.07 1.46 8.04 -51.93 -0.42 1.04 16 25 H 0.06 1.12 8.14 -51.93 -0.42 0.69 16 26 H 0.05 0.72 8.14 -51.93 -0.42 0.30 16 27 H 0.06 0.87 5.85 -51.93 -0.30 0.56 16 28 H 0.06 0.78 7.67 -51.93 -0.40 0.38 16 29 H 0.06 1.01 8.14 -51.93 -0.42 0.58 16 30 H 0.06 0.79 8.12 -51.93 -0.42 0.37 16 31 H 0.06 0.72 7.21 -51.93 -0.37 0.34 16 32 H 0.05 0.61 8.14 -51.93 -0.42 0.18 16 33 H 0.05 0.59 8.14 -51.93 -0.42 0.17 16 34 H 0.06 0.83 8.14 -51.93 -0.42 0.41 16 35 H 0.06 0.79 6.19 -51.93 -0.32 0.47 16 36 H 0.06 0.79 8.14 -51.93 -0.42 0.36 16 37 H 0.07 1.30 6.89 -51.93 -0.36 0.94 16 38 H 0.07 1.52 7.74 -51.93 -0.40 1.12 16 LS Contribution 282.46 15.07 4.26 4.26 Total: -1.00 -29.09 282.46 -8.48 -37.57 By element: Atomic # 1 Polarization: 13.45 SS G_CDS: -6.52 Total: 6.93 kcal Atomic # 6 Polarization: -18.84 SS G_CDS: -1.68 Total: -20.52 kcal Atomic # 7 Polarization: -46.38 SS G_CDS: 0.49 Total: -45.90 kcal Atomic # 14 Polarization: 22.68 SS G_CDS: -5.02 Total: 17.66 kcal Total LS contribution 4.26 Total: 4.26 kcal Total: -29.09 -8.48 -37.57 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000306338758.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 22.328 kcal (2) G-P(sol) polarization free energy of solvation -29.094 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -6.767 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.480 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.574 kcal (6) G-S(sol) free energy of system = (1) + (5) -15.247 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.28 seconds