Wall clock time and date at job start Mon Mar 30 2020 02:53:14 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31617 * 1 3 3 Si 1.86803 * 120.00125 * 2 1 4 4 H 1.48494 * 109.47228 * 179.97438 * 3 2 1 5 5 H 1.48501 * 109.46793 * 299.99926 * 3 2 1 6 6 H 1.48500 * 109.47000 * 60.00018 * 3 2 1 7 7 C 1.38815 * 119.99916 * 179.97438 * 2 1 3 8 8 H 1.08004 * 119.99568 * 179.72333 * 7 2 1 9 9 N 1.36929 * 120.00031 * 0.02562 * 7 2 1 10 10 C 1.46506 * 119.99807 * 179.97438 * 9 7 2 11 11 H 1.08999 * 110.03681 * 326.44180 * 10 9 7 12 12 C 1.54346 * 110.04733 * 87.93845 * 10 9 7 13 13 C 1.54923 * 104.20491 * 95.70760 * 12 10 9 14 14 C 1.54949 * 102.77657 * 37.79264 * 13 12 10 15 15 C 1.53602 * 110.05256 * 204.99646 * 10 9 7 16 16 C 1.52664 * 110.01570 * 121.63504 * 15 10 9 17 17 C 1.53065 * 109.50451 * 179.37469 * 16 15 10 18 18 C 1.52993 * 109.44856 * 59.40683 * 17 16 15 19 19 C 1.53004 * 109.52656 * 299.69049 * 18 17 16 20 20 C 1.52684 * 109.98508 * 359.87894 * 15 10 9 21 21 H 0.97000 * 120.00284 * 359.97438 * 1 2 3 22 22 H 0.96999 * 120.00117 * 359.97438 * 9 7 2 23 23 H 1.09004 * 110.47968 * 214.37823 * 12 10 9 24 24 H 1.08993 * 110.48885 * 337.02568 * 12 10 9 25 25 H 1.08997 * 110.74579 * 279.47086 * 13 12 10 26 26 H 1.08996 * 110.75282 * 156.11309 * 13 12 10 27 27 H 1.09001 * 110.50074 * 203.60912 * 14 13 12 28 28 H 1.09001 * 110.61793 * 80.98189 * 14 13 12 29 29 H 1.08993 * 109.47234 * 299.38342 * 16 15 10 30 30 H 1.08997 * 109.46874 * 59.36928 * 16 15 10 31 31 H 1.09001 * 109.47376 * 299.40864 * 17 16 15 32 32 H 1.09007 * 109.47222 * 179.40361 * 17 16 15 33 33 H 1.08997 * 109.46440 * 179.67030 * 18 17 16 34 34 H 1.09002 * 109.46486 * 59.70616 * 18 17 16 35 35 H 1.09001 * 109.47798 * 300.33846 * 19 18 17 36 36 H 1.09002 * 109.47677 * 180.30907 * 19 18 17 37 37 H 1.09004 * 109.46478 * 300.67445 * 20 15 10 38 38 H 1.08999 * 109.47135 * 60.66471 * 20 15 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6177 0.0000 4 1 3.7102 1.3464 0.0006 5 1 1.8914 2.3964 -1.2125 6 1 1.8915 2.3964 1.2125 7 6 2.0102 -1.2022 0.0005 8 1 3.0903 -1.2021 -0.0040 9 7 1.3256 -2.3880 0.0005 10 6 2.0581 -3.6568 0.0005 11 1 2.9839 -3.5535 -0.5655 12 6 2.3679 -4.0889 1.4495 13 6 1.2194 -5.0645 1.8090 14 6 0.9967 -5.8351 0.4833 15 6 1.1889 -4.7668 -0.6092 16 6 1.8961 -5.3815 -1.8145 17 6 1.0273 -6.4959 -2.4031 18 6 -0.3234 -5.9174 -2.8294 19 6 -1.0303 -5.3182 -1.6119 20 6 -0.1676 -4.2002 -1.0215 21 1 -0.4850 0.8400 0.0004 22 1 0.3556 -2.3880 0.0005 23 1 3.3303 -4.5984 1.4981 24 1 2.3578 -3.2260 2.1154 25 1 0.3212 -4.5159 2.0924 26 1 1.5249 -5.7444 2.6042 27 1 -0.0131 -6.2436 0.4441 28 1 1.7338 -6.6305 0.3732 29 1 2.0617 -4.6130 -2.5694 30 1 2.8545 -5.7954 -1.5012 31 1 0.8705 -7.2697 -1.6516 32 1 1.5279 -6.9273 -3.2700 33 1 -0.9400 -6.7096 -3.2539 34 1 -0.1659 -5.1399 -3.5769 35 1 -1.1828 -6.0943 -0.8617 36 1 -1.9948 -4.9113 -1.9154 37 1 -0.6661 -3.7795 -0.1482 38 1 -0.0235 -3.4197 -1.7686 RHF calculation, no. of doubly occupied orbitals= 43 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000306338758.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:53:14 Heat of formation + Delta-G solvation = -31.153324 kcal Electronic energy + Delta-G solvation = -16489.562670 eV Core-core repulsion = 14137.098605 eV Total energy + Delta-G solvation = -2352.464065 eV No. of doubly occupied orbitals = 43 Molecular weight (most abundant/longest-lived isotopes) = 223.163 amu Computer time = 0.32 seconds Orbital eigenvalues (eV) -41.14605 -36.91925 -35.19403 -32.47951 -31.67353 -30.80834 -28.29501 -25.69071 -24.88925 -23.24641 -22.19442 -20.59535 -19.22308 -18.76019 -17.06835 -16.44844 -16.18336 -15.54244 -15.16762 -15.03727 -14.58836 -14.20685 -13.90036 -13.43608 -13.20206 -12.99180 -12.90719 -12.54321 -12.38797 -12.13280 -12.02140 -11.95310 -11.76515 -11.74730 -11.45215 -11.34783 -10.95460 -10.89065 -10.69517 -10.64109 -8.91249 -7.92617 -5.18194 1.44369 1.44957 1.54909 2.56276 3.39329 3.69584 3.79099 3.85642 4.13633 4.17771 4.25195 4.38318 4.52334 4.57292 4.66408 4.72517 4.75553 4.81395 4.82362 4.89161 4.98594 5.09639 5.17269 5.20879 5.23354 5.33124 5.35379 5.38560 5.40800 5.47701 5.52894 5.55363 5.63703 5.73946 5.81002 6.31822 7.37042 8.19515 8.41755 9.31427 Molecular weight = 223.16amu Principal moments of inertia in cm(-1) A = 0.032690 B = 0.008666 C = 0.007873 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 856.337930 B = 3230.401676 C = 3555.392677 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.970 5.970 2 C -0.079 4.079 3 Si 0.968 3.032 4 H -0.268 1.268 5 H -0.294 1.294 6 H -0.294 1.294 7 C -0.234 4.234 8 H 0.069 0.931 9 N -0.734 5.734 10 C 0.167 3.833 11 H 0.035 0.965 12 C -0.143 4.143 13 C -0.116 4.116 14 C -0.103 4.103 15 C -0.059 4.059 16 C -0.102 4.102 17 C -0.110 4.110 18 C -0.116 4.116 19 C -0.116 4.116 20 C -0.091 4.091 21 H 0.249 0.751 22 H 0.379 0.621 23 H 0.070 0.930 24 H 0.035 0.965 25 H 0.041 0.959 26 H 0.079 0.921 27 H 0.076 0.924 28 H 0.084 0.916 29 H 0.037 0.963 30 H 0.070 0.930 31 H 0.077 0.923 32 H 0.071 0.929 33 H 0.078 0.922 34 H 0.044 0.956 35 H 0.077 0.923 36 H 0.054 0.946 37 H 0.036 0.964 38 H 0.032 0.968 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.491 -15.775 -2.255 16.005 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.622 5.622 2 C -0.271 4.271 3 Si 0.798 3.202 4 H -0.193 1.193 5 H -0.222 1.222 6 H -0.222 1.222 7 C -0.366 4.366 8 H 0.087 0.913 9 N -0.376 5.376 10 C 0.058 3.942 11 H 0.053 0.947 12 C -0.183 4.183 13 C -0.153 4.153 14 C -0.140 4.140 15 C -0.060 4.060 16 C -0.139 4.139 17 C -0.147 4.147 18 C -0.154 4.154 19 C -0.153 4.153 20 C -0.129 4.129 21 H 0.058 0.942 22 H 0.215 0.785 23 H 0.089 0.911 24 H 0.054 0.946 25 H 0.060 0.940 26 H 0.097 0.903 27 H 0.095 0.905 28 H 0.103 0.897 29 H 0.056 0.944 30 H 0.089 0.911 31 H 0.096 0.904 32 H 0.090 0.910 33 H 0.097 0.903 34 H 0.063 0.937 35 H 0.096 0.904 36 H 0.073 0.927 37 H 0.055 0.945 38 H 0.051 0.949 Dipole moment (debyes) X Y Z Total from point charges 1.650 -15.654 -2.275 15.905 hybrid contribution -0.021 1.806 0.120 1.810 sum 1.629 -13.848 -2.155 14.109 Atomic orbital electron populations 1.69823 1.06463 1.25653 1.60238 1.25482 0.96351 1.00783 1.04460 0.85135 0.78201 0.80279 0.76579 1.19272 1.22188 1.22176 1.19682 0.91259 0.85719 1.39952 0.91288 1.42971 1.05927 1.00589 1.88113 1.21160 0.93636 0.85488 0.93869 0.94725 1.23003 0.98583 0.98251 0.98437 1.22394 0.97414 0.97405 0.98124 1.22465 1.02384 0.96625 0.92569 1.21119 0.94518 0.94542 0.95812 1.21542 0.98665 0.97727 0.96002 1.21519 0.95000 0.97279 1.00929 1.21511 0.96949 0.99958 0.96937 1.21623 0.97762 0.97680 0.98269 1.21236 0.95594 0.97272 0.98837 0.94247 0.78527 0.91138 0.94611 0.94027 0.90256 0.90543 0.89726 0.94373 0.91095 0.90414 0.90990 0.90347 0.93726 0.90406 0.92719 0.94543 0.94913 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.97 -61.05 13.06 21.65 0.28 -60.77 16 2 C -0.08 -4.68 5.50 84.86 0.47 -4.21 16 3 Si 0.97 47.76 29.55 68.60 2.03 49.79 16 4 H -0.27 -12.48 7.11 99.48 0.71 -11.78 16 5 H -0.29 -14.50 7.11 99.48 0.71 -13.79 16 6 H -0.29 -14.49 7.11 99.48 0.71 -13.78 16 7 C -0.23 -13.48 9.96 84.04 0.84 -12.64 16 8 H 0.07 3.87 7.83 -2.91 -0.02 3.85 16 9 N -0.73 -38.28 4.52 -319.81 -1.44 -39.73 16 10 C 0.17 6.89 3.19 45.65 0.15 7.03 16 11 H 0.03 1.49 7.61 -2.39 -0.02 1.47 16 12 C -0.14 -5.24 6.55 31.71 0.21 -5.03 16 13 C -0.12 -3.55 6.91 31.92 0.22 -3.33 16 14 C -0.10 -2.74 4.66 31.60 0.15 -2.60 16 15 C -0.06 -1.94 0.63 -51.86 -0.03 -1.97 16 16 C -0.10 -2.85 4.33 30.50 0.13 -2.72 16 17 C -0.11 -2.39 5.72 30.61 0.18 -2.21 16 18 C -0.12 -2.74 5.91 30.59 0.18 -2.56 16 19 C -0.12 -3.18 5.71 30.62 0.17 -3.00 16 20 C -0.09 -3.33 3.36 30.51 0.10 -3.23 16 21 H 0.25 15.16 8.31 -92.71 -0.77 14.39 16 22 H 0.38 21.01 5.00 -92.71 -0.46 20.54 16 23 H 0.07 2.23 8.14 -2.39 -0.02 2.21 16 24 H 0.03 1.53 8.04 -2.39 -0.02 1.51 16 25 H 0.04 1.45 8.14 -2.39 -0.02 1.43 16 26 H 0.08 2.00 8.14 -2.39 -0.02 1.98 16 27 H 0.08 1.85 5.85 -2.39 -0.01 1.84 16 28 H 0.08 1.86 7.67 -2.39 -0.02 1.84 16 29 H 0.04 1.23 8.14 -2.39 -0.02 1.21 16 30 H 0.07 1.78 8.12 -2.39 -0.02 1.76 16 31 H 0.08 1.46 7.21 -2.39 -0.02 1.44 16 32 H 0.07 1.34 8.14 -2.38 -0.02 1.32 16 33 H 0.08 1.49 8.14 -2.39 -0.02 1.47 16 34 H 0.04 1.19 8.14 -2.39 -0.02 1.17 16 35 H 0.08 1.85 6.19 -2.39 -0.01 1.84 16 36 H 0.05 1.50 8.14 -2.39 -0.02 1.48 16 37 H 0.04 1.51 6.89 -2.38 -0.02 1.49 16 38 H 0.03 1.42 7.74 -2.39 -0.02 1.41 16 Total: -1.00 -65.06 282.46 4.18 -60.88 By element: Atomic # 1 Polarization: 25.74 SS G_CDS: 0.55 Total: 26.29 kcal Atomic # 6 Polarization: -39.23 SS G_CDS: 2.76 Total: -36.47 kcal Atomic # 7 Polarization: -99.33 SS G_CDS: -1.16 Total: -100.49 kcal Atomic # 14 Polarization: 47.76 SS G_CDS: 2.03 Total: 49.79 kcal Total: -65.06 4.18 -60.88 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000306338758.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 29.728 kcal (2) G-P(sol) polarization free energy of solvation -65.057 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -35.329 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.176 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -60.882 kcal (6) G-S(sol) free energy of system = (1) + (5) -31.153 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.32 seconds