Wall clock time and date at job start Mon Mar 30 2020 03:11:50 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31617 * 1 3 3 Si 1.86800 * 120.00575 * 2 1 4 4 H 1.48500 * 109.47035 * 239.72454 * 3 2 1 5 5 H 1.48503 * 109.46845 * 359.71950 * 3 2 1 6 6 H 1.48503 * 109.47237 * 119.72210 * 3 2 1 7 7 C 1.38817 * 119.99464 * 179.72036 * 2 1 3 8 8 H 1.07999 * 119.99931 * 180.27548 * 7 2 1 9 9 N 1.36935 * 119.99986 * 0.27719 * 7 2 1 10 10 C 1.46507 * 119.99742 * 179.97438 * 9 7 2 11 11 H 1.08996 * 109.46913 * 35.00718 * 10 9 7 12 12 C 1.52996 * 109.47624 * 275.00187 * 10 9 7 13 13 C 1.52998 * 109.46974 * 300.00366 * 12 10 9 14 14 C 1.52995 * 109.47200 * 299.99600 * 13 12 10 15 15 C 1.53004 * 109.47235 * 60.00172 * 14 13 12 16 16 H 1.09005 * 109.46664 * 60.00171 * 15 14 13 17 17 C 1.52995 * 109.47235 * 180.02562 * 15 14 13 18 18 C 1.53005 * 109.46863 * 180.02562 * 17 15 14 19 19 C 1.52998 * 109.47068 * 299.99903 * 18 17 15 20 20 C 1.52999 * 109.46929 * 60.00076 * 19 18 17 21 21 C 1.52995 * 109.47524 * 299.99724 * 20 19 18 22 22 H 1.08996 * 109.47285 * 300.00359 * 21 20 19 23 23 H 0.97001 * 120.00638 * 179.97438 * 1 2 3 24 24 H 0.96999 * 120.00077 * 0.02562 * 9 7 2 25 25 H 1.09004 * 109.46628 * 59.99842 * 12 10 9 26 26 H 1.08991 * 109.47518 * 179.97438 * 12 10 9 27 27 H 1.09006 * 109.46819 * 179.97438 * 13 12 10 28 28 H 1.08996 * 109.47374 * 60.00143 * 13 12 10 29 29 H 1.08996 * 109.47400 * 300.00527 * 14 13 12 30 30 H 1.09007 * 109.47471 * 180.02562 * 14 13 12 31 31 H 1.08996 * 109.47400 * 60.00356 * 17 15 14 32 32 H 1.09003 * 109.47056 * 299.99889 * 17 15 14 33 33 H 1.09006 * 109.46819 * 179.97438 * 18 17 15 34 34 H 1.09000 * 109.46897 * 60.00760 * 18 17 15 35 35 H 1.08996 * 109.47069 * 300.00213 * 19 18 17 36 36 H 1.09006 * 109.46819 * 179.97438 * 19 18 17 37 37 H 1.09001 * 109.47240 * 179.97438 * 20 19 18 38 38 H 1.09005 * 109.46887 * 60.00061 * 20 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2503 1.6176 0.0000 4 1 3.1091 1.6933 -1.2091 5 1 1.2854 2.7464 -0.0069 6 1 3.0990 1.6992 1.2159 7 6 2.0101 -1.2022 0.0059 8 1 3.0901 -1.2023 0.0104 9 7 1.3254 -2.3881 0.0059 10 6 2.0578 -3.6569 0.0115 11 1 2.9662 -3.5494 0.6043 12 6 2.4273 -4.0390 -1.4231 13 6 1.1521 -4.1899 -2.2551 14 6 0.2725 -5.2838 -1.6465 15 6 -0.0969 -4.9017 -0.2117 16 1 -0.6419 -3.9577 -0.2160 17 6 -0.9760 -5.9959 0.3972 18 6 -1.3460 -5.6135 1.8317 19 6 -0.0711 -5.4616 2.6639 20 6 0.8080 -4.3674 2.0549 21 6 1.1780 -4.7497 0.6205 22 1 1.7234 -5.6934 0.6252 23 1 -0.4851 -0.8400 -0.0004 24 1 0.3554 -2.3880 0.0015 25 1 3.0539 -3.2596 -1.8568 26 1 2.9726 -4.9827 -1.4189 27 1 1.4154 -4.4617 -3.2774 28 1 0.6073 -3.2459 -2.2594 29 1 0.8174 -6.2278 -1.6422 30 1 -0.6358 -5.3916 -2.2395 31 1 -0.4307 -6.9397 0.4015 32 1 -1.8845 -6.1039 -0.1955 33 1 -1.9727 -6.3929 2.2654 34 1 -1.8915 -4.6699 1.8270 35 1 0.4743 -6.4052 2.6686 36 1 -0.3347 -5.1887 3.6858 37 1 1.7160 -4.2588 2.6480 38 1 0.2624 -3.4237 2.0503 RHF calculation, no. of doubly occupied orbitals= 43 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000306342531.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:11:50 Heat of formation + Delta-G solvation = -28.836148 kcal Electronic energy + Delta-G solvation = -16580.097342 eV Core-core repulsion = 14227.733758 eV Total energy + Delta-G solvation = -2352.363584 eV No. of doubly occupied orbitals = 43 Molecular weight (most abundant/longest-lived isotopes) = 223.163 amu Computer time = 0.30 seconds Orbital eigenvalues (eV) -39.60880 -35.54957 -33.75508 -31.83195 -29.63635 -29.32498 -27.13012 -23.54325 -22.62512 -21.87134 -21.14103 -19.32748 -18.60742 -17.09129 -15.35171 -14.57449 -14.32655 -14.14264 -13.77453 -13.57701 -13.44632 -13.18329 -12.80014 -11.99030 -11.67156 -11.47077 -11.18809 -11.02493 -10.82319 -10.73195 -10.66270 -10.55521 -10.32181 -10.09674 -10.00312 -9.69640 -9.40956 -9.26351 -8.98365 -8.74978 -6.90712 -6.01718 -2.99366 3.55059 3.58493 3.75823 4.73734 4.94179 5.00874 5.07867 5.35954 5.45124 5.57190 5.62331 5.71058 5.74549 5.81326 5.87071 5.89352 5.91933 6.02405 6.06952 6.17083 6.22247 6.27541 6.35531 6.38072 6.46850 6.50461 6.59808 6.61692 6.71590 6.85639 6.93104 6.98181 7.11644 7.14919 7.90136 8.84099 9.33614 10.19954 10.36926 11.46734 Molecular weight = 223.16amu Principal moments of inertia in cm(-1) A = 0.030395 B = 0.009300 C = 0.008239 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 920.973369 B = 3009.886871 C = 3397.530683 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.947 5.947 2 C -0.048 4.048 3 Si 1.077 2.923 4 H -0.297 1.297 5 H -0.286 1.286 6 H -0.297 1.297 7 C -0.322 4.322 8 H 0.061 0.939 9 N -0.728 5.728 10 C 0.184 3.816 11 H 0.044 0.956 12 C -0.133 4.133 13 C -0.111 4.111 14 C -0.108 4.108 15 C -0.080 4.080 16 H 0.072 0.928 17 C -0.112 4.112 18 C -0.119 4.119 19 C -0.117 4.117 20 C -0.109 4.109 21 C -0.082 4.082 22 H 0.060 0.940 23 H 0.253 0.747 24 H 0.367 0.633 25 H 0.057 0.943 26 H 0.041 0.959 27 H 0.044 0.956 28 H 0.070 0.930 29 H 0.052 0.948 30 H 0.052 0.948 31 H 0.056 0.944 32 H 0.055 0.945 33 H 0.053 0.947 34 H 0.062 0.938 35 H 0.054 0.946 36 H 0.054 0.946 37 H 0.055 0.945 38 H 0.072 0.928 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.097 -12.454 0.828 12.482 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.593 5.593 2 C -0.245 4.245 3 Si 0.908 3.092 4 H -0.225 1.225 5 H -0.212 1.212 6 H -0.225 1.225 7 C -0.454 4.454 8 H 0.079 0.921 9 N -0.372 5.372 10 C 0.074 3.926 11 H 0.062 0.938 12 C -0.173 4.173 13 C -0.149 4.149 14 C -0.146 4.146 15 C -0.098 4.098 16 H 0.091 0.909 17 C -0.149 4.149 18 C -0.156 4.156 19 C -0.155 4.155 20 C -0.146 4.146 21 C -0.101 4.101 22 H 0.078 0.922 23 H 0.065 0.935 24 H 0.202 0.798 25 H 0.076 0.924 26 H 0.059 0.941 27 H 0.063 0.937 28 H 0.089 0.911 29 H 0.071 0.929 30 H 0.070 0.930 31 H 0.074 0.926 32 H 0.074 0.926 33 H 0.072 0.928 34 H 0.081 0.919 35 H 0.072 0.928 36 H 0.073 0.927 37 H 0.074 0.926 38 H 0.091 0.909 Dipole moment (debyes) X Y Z Total from point charges 0.170 -10.759 0.845 10.793 hybrid contribution 0.008 -1.676 -0.088 1.679 sum 0.178 -12.435 0.758 12.459 Atomic orbital electron populations 1.70877 1.05988 1.28252 1.54208 1.25654 0.97067 1.00759 1.01016 0.83275 0.74210 0.75939 0.75733 1.22477 1.21180 1.22453 1.20045 0.91893 0.85983 1.47440 0.92051 1.42454 1.04708 1.00461 1.89577 1.20154 0.93794 0.85930 0.92691 0.93799 1.22116 0.96814 0.99202 0.99191 1.21375 0.97049 0.99197 0.97233 1.21536 0.98946 0.98372 0.95721 1.21103 0.96050 0.98538 0.94121 0.90923 1.21578 0.99117 0.98480 0.95738 1.21522 0.97419 1.01175 0.95507 1.21544 0.96392 0.99084 0.98471 1.21496 0.99221 0.98684 0.95247 1.21346 0.95901 0.98324 0.94534 0.92177 0.93541 0.79827 0.92402 0.94051 0.93741 0.91088 0.92937 0.92971 0.92565 0.92609 0.92815 0.91947 0.92751 0.92674 0.92643 0.90925 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.95 -29.35 13.70 55.49 0.76 -28.59 16 2 C -0.05 -1.39 5.50 -17.43 -0.10 -1.49 16 3 Si 1.08 26.30 29.92 -169.99 -5.09 21.21 16 4 H -0.30 -6.97 7.11 56.52 0.40 -6.57 16 5 H -0.29 -7.12 7.11 56.52 0.40 -6.72 16 6 H -0.30 -6.96 7.11 56.52 0.40 -6.56 16 7 C -0.32 -9.01 9.93 -15.06 -0.15 -9.16 16 8 H 0.06 1.71 7.83 -52.49 -0.41 1.30 16 9 N -0.73 -17.86 3.58 -53.45 -0.19 -18.05 16 10 C 0.18 3.74 2.54 -67.96 -0.17 3.56 16 11 H 0.04 0.94 8.08 -51.93 -0.42 0.52 16 12 C -0.13 -2.48 5.61 -26.73 -0.15 -2.63 16 13 C -0.11 -1.97 5.76 -26.73 -0.15 -2.12 16 14 C -0.11 -1.67 5.20 -26.73 -0.14 -1.81 16 15 C -0.08 -1.28 1.82 -90.62 -0.16 -1.45 16 16 H 0.07 1.37 6.51 -51.93 -0.34 1.04 16 17 C -0.11 -1.52 5.20 -26.73 -0.14 -1.66 16 18 C -0.12 -1.60 5.92 -26.73 -0.16 -1.76 16 19 C -0.12 -1.64 5.92 -26.73 -0.16 -1.80 16 20 C -0.11 -1.85 5.05 -26.73 -0.13 -1.99 16 21 C -0.08 -1.39 1.78 -90.65 -0.16 -1.55 16 22 H 0.06 0.95 8.14 -51.93 -0.42 0.52 16 23 H 0.25 7.74 6.77 -40.82 -0.28 7.47 16 24 H 0.37 9.33 4.68 -40.82 -0.19 9.14 16 25 H 0.06 1.19 8.14 -51.93 -0.42 0.76 16 26 H 0.04 0.68 8.14 -51.93 -0.42 0.26 16 27 H 0.04 0.71 8.14 -51.93 -0.42 0.29 16 28 H 0.07 1.48 7.60 -51.93 -0.39 1.09 16 29 H 0.05 0.74 8.14 -51.93 -0.42 0.32 16 30 H 0.05 0.75 8.14 -51.92 -0.42 0.33 16 31 H 0.06 0.71 8.14 -51.93 -0.42 0.29 16 32 H 0.06 0.71 8.14 -51.93 -0.42 0.29 16 33 H 0.05 0.63 8.14 -51.93 -0.42 0.20 16 34 H 0.06 0.91 8.14 -51.93 -0.42 0.49 16 35 H 0.05 0.70 8.14 -51.93 -0.42 0.28 16 36 H 0.05 0.73 8.14 -51.93 -0.42 0.31 16 37 H 0.05 0.95 8.14 -51.93 -0.42 0.52 16 38 H 0.07 1.45 7.45 -51.93 -0.39 1.07 16 LS Contribution 283.52 15.07 4.27 4.27 Total: -1.00 -29.63 283.52 -8.73 -38.36 By element: Atomic # 1 Polarization: 13.34 SS G_CDS: -6.71 Total: 6.63 kcal Atomic # 6 Polarization: -22.06 SS G_CDS: -1.78 Total: -23.84 kcal Atomic # 7 Polarization: -47.21 SS G_CDS: 0.57 Total: -46.64 kcal Atomic # 14 Polarization: 26.30 SS G_CDS: -5.09 Total: 21.21 kcal Total LS contribution 4.27 Total: 4.27 kcal Total: -29.63 -8.73 -38.36 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000306342531.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 9.526 kcal (2) G-P(sol) polarization free energy of solvation -29.630 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -20.105 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.732 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.362 kcal (6) G-S(sol) free energy of system = (1) + (5) -28.836 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.30 seconds