Wall clock time and date at job start Mon Mar 30 2020 03:11:50 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31617 * 1 3 3 Si 1.86800 * 120.00575 * 2 1 4 4 H 1.48500 * 109.47035 * 239.72454 * 3 2 1 5 5 H 1.48503 * 109.46845 * 359.71950 * 3 2 1 6 6 H 1.48503 * 109.47237 * 119.72210 * 3 2 1 7 7 C 1.38817 * 119.99464 * 179.72036 * 2 1 3 8 8 H 1.07999 * 119.99931 * 180.27548 * 7 2 1 9 9 N 1.36935 * 119.99986 * 0.27719 * 7 2 1 10 10 C 1.46507 * 119.99742 * 179.97438 * 9 7 2 11 11 H 1.08996 * 109.46913 * 35.00718 * 10 9 7 12 12 C 1.52996 * 109.47624 * 275.00187 * 10 9 7 13 13 C 1.52998 * 109.46974 * 300.00366 * 12 10 9 14 14 C 1.52995 * 109.47200 * 299.99600 * 13 12 10 15 15 C 1.53004 * 109.47235 * 60.00172 * 14 13 12 16 16 H 1.09005 * 109.46664 * 60.00171 * 15 14 13 17 17 C 1.52995 * 109.47235 * 180.02562 * 15 14 13 18 18 C 1.53005 * 109.46863 * 180.02562 * 17 15 14 19 19 C 1.52998 * 109.47068 * 299.99903 * 18 17 15 20 20 C 1.52999 * 109.46929 * 60.00076 * 19 18 17 21 21 C 1.52995 * 109.47524 * 299.99724 * 20 19 18 22 22 H 1.08996 * 109.47285 * 300.00359 * 21 20 19 23 23 H 0.97001 * 120.00638 * 179.97438 * 1 2 3 24 24 H 0.96999 * 120.00077 * 0.02562 * 9 7 2 25 25 H 1.09004 * 109.46628 * 59.99842 * 12 10 9 26 26 H 1.08991 * 109.47518 * 179.97438 * 12 10 9 27 27 H 1.09006 * 109.46819 * 179.97438 * 13 12 10 28 28 H 1.08996 * 109.47374 * 60.00143 * 13 12 10 29 29 H 1.08996 * 109.47400 * 300.00527 * 14 13 12 30 30 H 1.09007 * 109.47471 * 180.02562 * 14 13 12 31 31 H 1.08996 * 109.47400 * 60.00356 * 17 15 14 32 32 H 1.09003 * 109.47056 * 299.99889 * 17 15 14 33 33 H 1.09006 * 109.46819 * 179.97438 * 18 17 15 34 34 H 1.09000 * 109.46897 * 60.00760 * 18 17 15 35 35 H 1.08996 * 109.47069 * 300.00213 * 19 18 17 36 36 H 1.09006 * 109.46819 * 179.97438 * 19 18 17 37 37 H 1.09001 * 109.47240 * 179.97438 * 20 19 18 38 38 H 1.09005 * 109.46887 * 60.00061 * 20 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2503 1.6176 0.0000 4 1 3.1091 1.6933 -1.2091 5 1 1.2854 2.7464 -0.0069 6 1 3.0990 1.6992 1.2159 7 6 2.0101 -1.2022 0.0059 8 1 3.0901 -1.2023 0.0104 9 7 1.3254 -2.3881 0.0059 10 6 2.0578 -3.6569 0.0115 11 1 2.9662 -3.5494 0.6043 12 6 2.4273 -4.0390 -1.4231 13 6 1.1521 -4.1899 -2.2551 14 6 0.2725 -5.2838 -1.6465 15 6 -0.0969 -4.9017 -0.2117 16 1 -0.6419 -3.9577 -0.2160 17 6 -0.9760 -5.9959 0.3972 18 6 -1.3460 -5.6135 1.8317 19 6 -0.0711 -5.4616 2.6639 20 6 0.8080 -4.3674 2.0549 21 6 1.1780 -4.7497 0.6205 22 1 1.7234 -5.6934 0.6252 23 1 -0.4851 -0.8400 -0.0004 24 1 0.3554 -2.3880 0.0015 25 1 3.0539 -3.2596 -1.8568 26 1 2.9726 -4.9827 -1.4189 27 1 1.4154 -4.4617 -3.2774 28 1 0.6073 -3.2459 -2.2594 29 1 0.8174 -6.2278 -1.6422 30 1 -0.6358 -5.3916 -2.2395 31 1 -0.4307 -6.9397 0.4015 32 1 -1.8845 -6.1039 -0.1955 33 1 -1.9727 -6.3929 2.2654 34 1 -1.8915 -4.6699 1.8270 35 1 0.4743 -6.4052 2.6686 36 1 -0.3347 -5.1887 3.6858 37 1 1.7160 -4.2588 2.6480 38 1 0.2624 -3.4237 2.0503 RHF calculation, no. of doubly occupied orbitals= 43 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000306342531.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:11:50 Heat of formation + Delta-G solvation = -44.795069 kcal Electronic energy + Delta-G solvation = -16580.789373 eV Core-core repulsion = 14227.733758 eV Total energy + Delta-G solvation = -2353.055615 eV No. of doubly occupied orbitals = 43 Molecular weight (most abundant/longest-lived isotopes) = 223.163 amu Computer time = 0.32 seconds Orbital eigenvalues (eV) -41.00306 -37.04317 -35.51173 -33.49020 -31.09630 -30.87541 -28.69471 -25.61249 -24.03837 -23.18459 -22.50324 -20.57969 -20.22494 -19.10666 -17.05962 -16.06189 -15.79597 -15.61747 -15.44643 -15.11795 -14.88119 -14.60900 -14.25238 -13.31436 -13.28447 -12.89871 -12.68656 -12.57508 -12.40249 -12.34003 -12.00453 -11.98126 -11.86833 -11.65072 -11.45362 -11.27323 -11.14588 -11.00483 -10.56192 -10.45644 -9.00105 -8.34111 -5.24060 1.55282 1.65447 1.81548 2.72420 3.43793 3.67477 3.73018 3.84175 3.92768 4.12874 4.21791 4.34611 4.40020 4.43671 4.56633 4.60988 4.65229 4.67048 4.79316 4.86108 4.93435 4.99390 5.00871 5.11863 5.19576 5.23406 5.28556 5.30142 5.36901 5.47438 5.51470 5.55965 5.59795 5.66706 5.75889 6.54193 7.17678 8.10455 8.22452 9.17884 Molecular weight = 223.16amu Principal moments of inertia in cm(-1) A = 0.030395 B = 0.009300 C = 0.008239 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 920.973369 B = 3009.886871 C = 3397.530683 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.978 5.978 2 C -0.109 4.109 3 Si 1.124 2.876 4 H -0.281 1.281 5 H -0.294 1.294 6 H -0.280 1.280 7 C -0.318 4.318 8 H 0.059 0.941 9 N -0.736 5.736 10 C 0.174 3.826 11 H 0.029 0.971 12 C -0.127 4.127 13 C -0.108 4.108 14 C -0.102 4.102 15 C -0.078 4.078 16 H 0.032 0.968 17 C -0.105 4.105 18 C -0.119 4.119 19 C -0.110 4.110 20 C -0.107 4.107 21 C -0.074 4.074 22 H 0.089 0.911 23 H 0.241 0.759 24 H 0.360 0.640 25 H 0.030 0.970 26 H 0.075 0.925 27 H 0.063 0.937 28 H 0.027 0.973 29 H 0.081 0.919 30 H 0.064 0.936 31 H 0.080 0.920 32 H 0.066 0.934 33 H 0.081 0.919 34 H 0.038 0.962 35 H 0.078 0.922 36 H 0.060 0.940 37 H 0.048 0.952 38 H 0.029 0.971 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.714 -15.043 0.782 15.080 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.627 5.627 2 C -0.300 4.300 3 Si 0.950 3.050 4 H -0.207 1.207 5 H -0.220 1.220 6 H -0.206 1.206 7 C -0.450 4.450 8 H 0.077 0.923 9 N -0.379 5.379 10 C 0.066 3.934 11 H 0.047 0.953 12 C -0.167 4.167 13 C -0.146 4.146 14 C -0.139 4.139 15 C -0.097 4.097 16 H 0.051 0.949 17 C -0.142 4.142 18 C -0.157 4.157 19 C -0.148 4.148 20 C -0.145 4.145 21 C -0.093 4.093 22 H 0.107 0.893 23 H 0.051 0.949 24 H 0.194 0.806 25 H 0.049 0.951 26 H 0.094 0.906 27 H 0.082 0.918 28 H 0.046 0.954 29 H 0.099 0.901 30 H 0.083 0.917 31 H 0.098 0.902 32 H 0.085 0.915 33 H 0.099 0.901 34 H 0.057 0.943 35 H 0.097 0.903 36 H 0.078 0.922 37 H 0.067 0.933 38 H 0.048 0.952 Dipole moment (debyes) X Y Z Total from point charges 0.818 -13.399 0.798 13.448 hybrid contribution -0.133 -0.912 -0.068 0.924 sum 0.685 -14.311 0.729 14.346 Atomic orbital electron populations 1.70984 1.07091 1.27560 1.57110 1.27023 0.97135 1.04340 1.01490 0.82663 0.73373 0.72087 0.76920 1.20723 1.22024 1.20646 1.20358 0.91999 0.87410 1.45240 0.92260 1.42583 1.04493 1.01250 1.89535 1.20429 0.93561 0.85450 0.93963 0.95310 1.22016 0.97243 0.99872 0.97592 1.21331 0.96502 0.98253 0.98526 1.21509 0.99276 0.98281 0.94817 1.21060 0.95638 0.97938 0.95036 0.94950 1.21543 0.99217 0.98045 0.95426 1.21537 0.97311 1.00985 0.95825 1.21503 0.96151 0.98630 0.98494 1.21440 0.99084 0.98126 0.95835 1.21289 0.95988 0.97854 0.94139 0.89319 0.94897 0.80643 0.95116 0.90624 0.91806 0.95448 0.90082 0.91745 0.90152 0.91545 0.90076 0.94279 0.90337 0.92160 0.93281 0.95219 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.98 -63.09 13.70 21.65 0.30 -62.79 16 2 C -0.11 -6.53 5.50 84.86 0.47 -6.06 16 3 Si 1.12 53.97 29.92 68.60 2.05 56.03 16 4 H -0.28 -12.61 7.11 99.48 0.71 -11.90 16 5 H -0.29 -14.42 7.11 99.48 0.71 -13.72 16 6 H -0.28 -12.56 7.11 99.48 0.71 -11.85 16 7 C -0.32 -18.36 9.93 84.04 0.83 -17.53 16 8 H 0.06 3.38 7.83 -2.91 -0.02 3.36 16 9 N -0.74 -37.62 3.58 -323.02 -1.16 -38.77 16 10 C 0.17 7.10 2.54 44.97 0.11 7.22 16 11 H 0.03 1.25 8.08 -2.39 -0.02 1.23 16 12 C -0.13 -4.65 5.61 30.59 0.17 -4.47 16 13 C -0.11 -3.75 5.76 30.59 0.18 -3.57 16 14 C -0.10 -2.85 5.20 30.59 0.16 -2.69 16 15 C -0.08 -2.41 1.82 -10.79 -0.02 -2.43 16 16 H 0.03 1.26 6.51 -2.38 -0.02 1.25 16 17 C -0.10 -2.51 5.20 30.59 0.16 -2.35 16 18 C -0.12 -2.93 5.92 30.60 0.18 -2.75 16 19 C -0.11 -2.83 5.92 30.59 0.18 -2.65 16 20 C -0.11 -3.62 5.05 30.59 0.15 -3.47 16 21 C -0.07 -2.41 1.78 -10.81 -0.02 -2.43 16 22 H 0.09 2.44 8.14 -2.39 -0.02 2.42 16 23 H 0.24 15.58 6.77 -92.71 -0.63 14.95 16 24 H 0.36 19.46 4.68 -92.71 -0.43 19.03 16 25 H 0.03 1.26 8.14 -2.38 -0.02 1.24 16 26 H 0.08 2.25 8.14 -2.39 -0.02 2.23 16 27 H 0.06 1.94 8.14 -2.38 -0.02 1.92 16 28 H 0.03 1.17 7.60 -2.39 -0.02 1.15 16 29 H 0.08 1.88 8.14 -2.39 -0.02 1.86 16 30 H 0.06 1.67 8.14 -2.38 -0.02 1.66 16 31 H 0.08 1.60 8.14 -2.39 -0.02 1.58 16 32 H 0.07 1.48 8.14 -2.39 -0.02 1.46 16 33 H 0.08 1.59 8.14 -2.38 -0.02 1.57 16 34 H 0.04 1.13 8.14 -2.39 -0.02 1.11 16 35 H 0.08 1.68 8.14 -2.39 -0.02 1.66 16 36 H 0.06 1.48 8.14 -2.38 -0.02 1.46 16 37 H 0.05 1.67 8.14 -2.39 -0.02 1.65 16 38 H 0.03 1.24 7.45 -2.38 -0.02 1.22 16 Total: -1.00 -66.65 283.52 4.47 -62.18 By element: Atomic # 1 Polarization: 25.83 SS G_CDS: 0.71 Total: 26.54 kcal Atomic # 6 Polarization: -45.74 SS G_CDS: 2.56 Total: -43.18 kcal Atomic # 7 Polarization: -100.71 SS G_CDS: -0.86 Total: -101.57 kcal Atomic # 14 Polarization: 53.97 SS G_CDS: 2.05 Total: 56.03 kcal Total: -66.65 4.47 -62.18 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000306342531.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 17.389 kcal (2) G-P(sol) polarization free energy of solvation -66.650 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -49.261 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.466 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.184 kcal (6) G-S(sol) free energy of system = (1) + (5) -44.795 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.32 seconds