Wall clock time and date at job start Mon Mar 30 2020 03:11:57 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31620 * 1 3 3 Si 1.86798 * 119.99936 * 2 1 4 4 H 1.48498 * 109.47381 * 239.99931 * 3 2 1 5 5 H 1.48499 * 109.47297 * 359.97438 * 3 2 1 6 6 H 1.48504 * 109.47076 * 119.99653 * 3 2 1 7 7 C 1.38817 * 119.99831 * 179.97438 * 2 1 3 8 8 H 1.07999 * 119.99462 * 180.02562 * 7 2 1 9 9 N 1.36930 * 119.99916 * 0.02562 * 7 2 1 10 10 C 1.46500 * 119.99841 * 179.97438 * 9 7 2 11 11 H 1.08998 * 109.46845 * 35.00694 * 10 9 7 12 12 C 1.52997 * 109.47473 * 275.00145 * 10 9 7 13 13 C 1.53000 * 109.47060 * 180.02562 * 12 10 9 14 14 C 1.52996 * 109.47328 * 60.00126 * 13 12 10 15 15 C 1.53002 * 109.46891 * 299.99597 * 14 13 12 16 16 H 1.09001 * 109.47142 * 300.00176 * 15 14 13 17 17 C 1.52996 * 109.46891 * 179.97438 * 15 14 13 18 18 C 1.52993 * 109.47476 * 300.00007 * 17 15 14 19 19 C 1.52997 * 109.47347 * 300.00174 * 18 17 15 20 20 C 1.52996 * 109.47165 * 59.99861 * 19 18 17 21 21 C 1.52997 * 109.46978 * 60.00410 * 15 14 13 22 22 H 1.09000 * 109.47140 * 179.97438 * 21 15 14 23 23 H 0.97006 * 120.00314 * 0.02562 * 1 2 3 24 24 H 0.97001 * 120.00611 * 359.97438 * 9 7 2 25 25 H 1.09002 * 109.47153 * 59.99757 * 12 10 9 26 26 H 1.09001 * 109.46832 * 299.99948 * 12 10 9 27 27 H 1.09004 * 109.46724 * 180.02562 * 13 12 10 28 28 H 1.09001 * 109.47194 * 299.99650 * 13 12 10 29 29 H 1.08992 * 109.47554 * 59.99639 * 14 13 12 30 30 H 1.09004 * 109.47108 * 179.97438 * 14 13 12 31 31 H 1.08996 * 109.47261 * 60.00575 * 17 15 14 32 32 H 1.09004 * 109.47368 * 180.02562 * 17 15 14 33 33 H 1.09000 * 109.46925 * 60.00213 * 18 17 15 34 34 H 1.09001 * 109.47730 * 179.97438 * 18 17 15 35 35 H 1.09001 * 109.46922 * 179.97438 * 19 18 17 36 36 H 1.08996 * 109.47497 * 299.99591 * 19 18 17 37 37 H 1.09004 * 109.47552 * 59.99988 * 20 19 18 38 38 H 1.08996 * 109.47452 * 179.97438 * 20 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6177 0.0000 4 1 3.1039 1.6965 -1.2125 5 1 1.2852 2.7465 -0.0006 6 1 3.1039 1.6964 1.2126 7 6 2.0102 -1.2022 0.0005 8 1 3.0902 -1.2021 0.0010 9 7 1.3255 -2.3880 0.0005 10 6 2.0580 -3.6568 0.0005 11 1 2.9686 -3.5505 0.5901 12 6 2.4220 -4.0356 -1.4364 13 6 3.1864 -5.3610 -1.4364 14 6 2.3086 -6.4560 -0.8270 15 6 1.9448 -6.0772 0.6100 16 1 2.8555 -5.9713 1.1996 17 6 1.0665 -7.1719 1.2192 18 6 -0.2117 -7.3198 0.3916 19 6 -0.9756 -5.9942 0.3916 20 6 -0.0974 -4.8994 -0.2176 21 6 1.1803 -4.7519 0.6100 22 1 0.9207 -4.4822 1.6337 23 1 -0.4851 0.8401 -0.0004 24 1 0.3555 -2.3881 0.0005 25 1 3.0469 -3.2553 -1.8707 26 1 1.5113 -4.1419 -2.0259 27 1 3.4460 -5.6306 -2.4601 28 1 4.0971 -5.2552 -0.8468 29 1 1.3980 -6.5618 -1.4165 30 1 2.8531 -7.4003 -0.8274 31 1 1.6107 -8.1162 1.2192 32 1 0.8069 -6.9018 2.2428 33 1 0.0476 -7.5897 -0.6322 34 1 -0.8372 -8.1000 0.8252 35 1 -1.8860 -6.0995 -0.1985 36 1 -1.2349 -5.7242 1.4153 37 1 0.1619 -5.1693 -1.2414 38 1 -0.6418 -3.9551 -0.2180 RHF calculation, no. of doubly occupied orbitals= 43 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000306342555.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:11:57 Heat of formation + Delta-G solvation = -25.543216 kcal Electronic energy + Delta-G solvation = -16385.544471 eV Core-core repulsion = 14033.323679 eV Total energy + Delta-G solvation = -2352.220792 eV No. of doubly occupied orbitals = 43 Molecular weight (most abundant/longest-lived isotopes) = 223.163 amu Computer time = 0.30 seconds Orbital eigenvalues (eV) -39.90931 -35.26266 -33.60764 -31.69762 -29.94834 -29.36724 -27.07743 -23.84548 -22.83432 -21.77353 -21.44796 -19.59111 -17.55161 -17.06634 -15.22692 -15.05853 -14.48079 -14.41998 -13.76943 -13.47019 -12.99481 -12.82814 -12.39934 -12.22354 -11.94307 -11.78630 -11.56331 -10.94254 -10.88373 -10.81648 -10.67069 -10.46387 -10.31434 -10.15648 -10.01823 -9.78735 -9.47632 -9.33767 -9.15714 -8.77529 -6.86334 -5.70267 -2.97523 3.47344 3.51657 3.52624 4.64033 4.90910 4.99937 5.03085 5.34301 5.41055 5.50715 5.56695 5.68823 5.73797 5.80284 5.87827 5.89207 5.94556 6.02108 6.03701 6.13125 6.21109 6.25296 6.32296 6.40680 6.46004 6.51355 6.55413 6.58559 6.71609 6.78756 6.94386 6.99878 7.11022 7.30229 7.75963 8.49610 9.60156 10.20882 10.55528 11.52691 Molecular weight = 223.16amu Principal moments of inertia in cm(-1) A = 0.040285 B = 0.007768 C = 0.006994 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 694.874360 B = 3603.576548 C = 4002.193944 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.935 5.935 2 C -0.016 4.016 3 Si 0.905 3.095 4 H -0.287 1.287 5 H -0.292 1.292 6 H -0.287 1.287 7 C -0.235 4.235 8 H 0.068 0.932 9 N -0.725 5.725 10 C 0.183 3.817 11 H 0.042 0.958 12 C -0.136 4.136 13 C -0.117 4.117 14 C -0.113 4.113 15 C -0.079 4.079 16 H 0.065 0.935 17 C -0.112 4.112 18 C -0.118 4.118 19 C -0.119 4.119 20 C -0.114 4.114 21 C -0.083 4.083 22 H 0.066 0.934 23 H 0.254 0.746 24 H 0.384 0.616 25 H 0.056 0.944 26 H 0.056 0.944 27 H 0.049 0.951 28 H 0.054 0.946 29 H 0.065 0.935 30 H 0.050 0.950 31 H 0.054 0.946 32 H 0.058 0.942 33 H 0.061 0.939 34 H 0.052 0.948 35 H 0.054 0.946 36 H 0.058 0.942 37 H 0.064 0.936 38 H 0.069 0.931 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.735 -14.697 -0.136 14.800 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.584 5.584 2 C -0.211 4.211 3 Si 0.736 3.264 4 H -0.214 1.214 5 H -0.218 1.218 6 H -0.214 1.214 7 C -0.366 4.366 8 H 0.086 0.914 9 N -0.366 5.366 10 C 0.073 3.927 11 H 0.060 0.940 12 C -0.176 4.176 13 C -0.156 4.156 14 C -0.150 4.150 15 C -0.098 4.098 16 H 0.083 0.917 17 C -0.150 4.150 18 C -0.156 4.156 19 C -0.156 4.156 20 C -0.152 4.152 21 C -0.102 4.102 22 H 0.084 0.916 23 H 0.064 0.936 24 H 0.219 0.781 25 H 0.075 0.925 26 H 0.075 0.925 27 H 0.068 0.932 28 H 0.073 0.927 29 H 0.084 0.916 30 H 0.069 0.931 31 H 0.073 0.927 32 H 0.077 0.923 33 H 0.080 0.920 34 H 0.071 0.929 35 H 0.073 0.927 36 H 0.076 0.924 37 H 0.082 0.918 38 H 0.087 0.913 Dipole moment (debyes) X Y Z Total from point charges 1.840 -14.527 -0.117 14.643 hybrid contribution 0.187 1.012 -0.048 1.030 sum 2.027 -13.515 -0.165 13.667 Atomic orbital electron populations 1.69650 1.05051 1.25586 1.58109 1.24714 0.95488 0.97547 1.03391 0.86297 0.78515 0.83796 0.77775 1.21397 1.21767 1.21383 1.19225 0.90944 0.84315 1.42120 0.91387 1.42510 1.05838 0.99736 1.88521 1.20193 0.93870 0.85806 0.92827 0.93954 1.22268 0.99558 0.95044 1.00760 1.21534 0.98500 0.96047 0.99470 1.21640 0.99696 0.97478 0.96205 1.21093 0.97870 0.94799 0.96064 0.91705 1.21541 0.96124 0.98182 0.99137 1.21553 0.96468 0.97282 1.00286 1.21543 0.97980 0.95127 1.00981 1.21603 0.95834 0.98461 0.99275 1.21333 0.95295 0.94002 0.99574 0.91591 0.93590 0.78130 0.92496 0.92507 0.93185 0.92725 0.91608 0.93142 0.92690 0.92283 0.91997 0.92942 0.92684 0.92356 0.91765 0.91285 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.94 -28.59 13.06 55.49 0.72 -27.86 16 2 C -0.02 -0.46 5.50 -17.43 -0.10 -0.56 16 3 Si 0.90 22.76 29.55 -169.99 -5.02 17.73 16 4 H -0.29 -7.12 7.11 56.52 0.40 -6.71 16 5 H -0.29 -7.39 7.11 56.52 0.40 -6.98 16 6 H -0.29 -7.11 7.11 56.52 0.40 -6.71 16 7 C -0.23 -6.62 9.93 -15.06 -0.15 -6.77 16 8 H 0.07 1.87 7.83 -52.49 -0.41 1.46 16 9 N -0.72 -18.41 5.04 -53.43 -0.27 -18.67 16 10 C 0.18 3.72 2.46 -67.93 -0.17 3.55 16 11 H 0.04 0.90 8.08 -51.93 -0.42 0.48 16 12 C -0.14 -2.51 5.23 -26.73 -0.14 -2.65 16 13 C -0.12 -1.73 5.92 -26.73 -0.16 -1.89 16 14 C -0.11 -1.50 4.59 -26.73 -0.12 -1.62 16 15 C -0.08 -1.11 2.47 -90.62 -0.22 -1.34 16 16 H 0.06 0.92 8.14 -51.93 -0.42 0.49 16 17 C -0.11 -1.37 5.45 -26.74 -0.15 -1.51 16 18 C -0.12 -1.41 5.65 -26.74 -0.15 -1.56 16 19 C -0.12 -1.62 5.92 -26.73 -0.16 -1.78 16 20 C -0.11 -1.88 4.41 -26.76 -0.12 -1.99 16 21 C -0.08 -1.41 2.15 -90.64 -0.19 -1.61 16 22 H 0.07 1.21 8.14 -51.93 -0.42 0.79 16 23 H 0.25 7.55 8.31 -40.82 -0.34 7.21 16 24 H 0.38 10.27 6.06 -40.82 -0.25 10.03 16 25 H 0.06 1.15 8.14 -51.93 -0.42 0.73 16 26 H 0.06 1.07 6.43 -51.93 -0.33 0.74 16 27 H 0.05 0.68 8.14 -51.93 -0.42 0.25 16 28 H 0.05 0.79 8.14 -51.93 -0.42 0.37 16 29 H 0.07 0.88 4.81 -51.93 -0.25 0.64 16 30 H 0.05 0.59 8.14 -51.93 -0.42 0.17 16 31 H 0.05 0.59 8.14 -51.93 -0.42 0.17 16 32 H 0.06 0.72 8.14 -51.93 -0.42 0.30 16 33 H 0.06 0.72 6.43 -51.93 -0.33 0.39 16 34 H 0.05 0.56 8.14 -51.93 -0.42 0.13 16 35 H 0.05 0.70 8.14 -51.93 -0.42 0.28 16 36 H 0.06 0.81 8.14 -51.93 -0.42 0.39 16 37 H 0.06 1.04 4.81 -51.93 -0.25 0.79 16 38 H 0.07 1.32 6.50 -51.93 -0.34 0.98 16 LS Contribution 277.45 15.07 4.18 4.18 Total: -1.00 -29.38 277.45 -8.58 -37.96 By element: Atomic # 1 Polarization: 12.77 SS G_CDS: -6.37 Total: 6.40 kcal Atomic # 6 Polarization: -17.91 SS G_CDS: -1.82 Total: -19.73 kcal Atomic # 7 Polarization: -46.99 SS G_CDS: 0.46 Total: -46.54 kcal Atomic # 14 Polarization: 22.76 SS G_CDS: -5.02 Total: 17.73 kcal Total LS contribution 4.18 Total: 4.18 kcal Total: -29.38 -8.58 -37.96 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000306342555.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 12.413 kcal (2) G-P(sol) polarization free energy of solvation -29.377 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -16.964 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.579 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.956 kcal (6) G-S(sol) free energy of system = (1) + (5) -25.543 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.30 seconds