Wall clock time and date at job start Mon Mar 30 2020 03:11:57 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31620 * 1 3 3 Si 1.86798 * 119.99936 * 2 1 4 4 H 1.48498 * 109.47381 * 239.99931 * 3 2 1 5 5 H 1.48499 * 109.47297 * 359.97438 * 3 2 1 6 6 H 1.48504 * 109.47076 * 119.99653 * 3 2 1 7 7 C 1.38817 * 119.99831 * 179.97438 * 2 1 3 8 8 H 1.07999 * 119.99462 * 180.02562 * 7 2 1 9 9 N 1.36930 * 119.99916 * 0.02562 * 7 2 1 10 10 C 1.46500 * 119.99841 * 179.97438 * 9 7 2 11 11 H 1.08998 * 109.46845 * 35.00694 * 10 9 7 12 12 C 1.52997 * 109.47473 * 275.00145 * 10 9 7 13 13 C 1.53000 * 109.47060 * 180.02562 * 12 10 9 14 14 C 1.52996 * 109.47328 * 60.00126 * 13 12 10 15 15 C 1.53002 * 109.46891 * 299.99597 * 14 13 12 16 16 H 1.09001 * 109.47142 * 300.00176 * 15 14 13 17 17 C 1.52996 * 109.46891 * 179.97438 * 15 14 13 18 18 C 1.52993 * 109.47476 * 300.00007 * 17 15 14 19 19 C 1.52997 * 109.47347 * 300.00174 * 18 17 15 20 20 C 1.52996 * 109.47165 * 59.99861 * 19 18 17 21 21 C 1.52997 * 109.46978 * 60.00410 * 15 14 13 22 22 H 1.09000 * 109.47140 * 179.97438 * 21 15 14 23 23 H 0.97006 * 120.00314 * 0.02562 * 1 2 3 24 24 H 0.97001 * 120.00611 * 359.97438 * 9 7 2 25 25 H 1.09002 * 109.47153 * 59.99757 * 12 10 9 26 26 H 1.09001 * 109.46832 * 299.99948 * 12 10 9 27 27 H 1.09004 * 109.46724 * 180.02562 * 13 12 10 28 28 H 1.09001 * 109.47194 * 299.99650 * 13 12 10 29 29 H 1.08992 * 109.47554 * 59.99639 * 14 13 12 30 30 H 1.09004 * 109.47108 * 179.97438 * 14 13 12 31 31 H 1.08996 * 109.47261 * 60.00575 * 17 15 14 32 32 H 1.09004 * 109.47368 * 180.02562 * 17 15 14 33 33 H 1.09000 * 109.46925 * 60.00213 * 18 17 15 34 34 H 1.09001 * 109.47730 * 179.97438 * 18 17 15 35 35 H 1.09001 * 109.46922 * 179.97438 * 19 18 17 36 36 H 1.08996 * 109.47497 * 299.99591 * 19 18 17 37 37 H 1.09004 * 109.47552 * 59.99988 * 20 19 18 38 38 H 1.08996 * 109.47452 * 179.97438 * 20 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6177 0.0000 4 1 3.1039 1.6965 -1.2125 5 1 1.2852 2.7465 -0.0006 6 1 3.1039 1.6964 1.2126 7 6 2.0102 -1.2022 0.0005 8 1 3.0902 -1.2021 0.0010 9 7 1.3255 -2.3880 0.0005 10 6 2.0580 -3.6568 0.0005 11 1 2.9686 -3.5505 0.5901 12 6 2.4220 -4.0356 -1.4364 13 6 3.1864 -5.3610 -1.4364 14 6 2.3086 -6.4560 -0.8270 15 6 1.9448 -6.0772 0.6100 16 1 2.8555 -5.9713 1.1996 17 6 1.0665 -7.1719 1.2192 18 6 -0.2117 -7.3198 0.3916 19 6 -0.9756 -5.9942 0.3916 20 6 -0.0974 -4.8994 -0.2176 21 6 1.1803 -4.7519 0.6100 22 1 0.9207 -4.4822 1.6337 23 1 -0.4851 0.8401 -0.0004 24 1 0.3555 -2.3881 0.0005 25 1 3.0469 -3.2553 -1.8707 26 1 1.5113 -4.1419 -2.0259 27 1 3.4460 -5.6306 -2.4601 28 1 4.0971 -5.2552 -0.8468 29 1 1.3980 -6.5618 -1.4165 30 1 2.8531 -7.4003 -0.8274 31 1 1.6107 -8.1162 1.2192 32 1 0.8069 -6.9018 2.2428 33 1 0.0476 -7.5897 -0.6322 34 1 -0.8372 -8.1000 0.8252 35 1 -1.8860 -6.0995 -0.1985 36 1 -1.2349 -5.7242 1.4153 37 1 0.1619 -5.1693 -1.2414 38 1 -0.6418 -3.9551 -0.2180 RHF calculation, no. of doubly occupied orbitals= 43 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000306342555.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:11:57 Heat of formation + Delta-G solvation = -42.024094 kcal Electronic energy + Delta-G solvation = -16386.259136 eV Core-core repulsion = 14033.323679 eV Total energy + Delta-G solvation = -2352.935457 eV No. of doubly occupied orbitals = 43 Molecular weight (most abundant/longest-lived isotopes) = 223.163 amu Computer time = 0.31 seconds Orbital eigenvalues (eV) -41.20120 -36.82201 -35.17582 -33.42528 -31.39306 -30.78957 -28.58387 -25.75134 -24.23063 -22.99119 -22.72312 -20.99415 -19.32724 -18.63448 -16.82407 -16.43095 -16.14023 -15.66343 -15.30247 -15.12552 -14.42284 -14.24942 -13.71307 -13.59929 -13.35021 -13.03394 -12.91161 -12.77060 -12.73096 -12.25266 -12.05601 -11.94666 -11.81214 -11.68232 -11.63651 -11.25170 -10.95143 -10.68313 -10.58625 -10.53589 -8.96468 -7.93507 -5.20797 1.44461 1.47760 1.53867 2.55950 3.38486 3.75846 3.79236 3.85170 4.08449 4.26599 4.29013 4.39111 4.45457 4.54045 4.61196 4.64945 4.72347 4.77484 4.87392 4.89043 4.92229 5.05287 5.12890 5.24235 5.26204 5.30981 5.31824 5.37302 5.46142 5.49035 5.50617 5.61166 5.66394 5.69851 5.83209 6.29760 7.34907 8.14923 8.37999 9.30104 Molecular weight = 223.16amu Principal moments of inertia in cm(-1) A = 0.040285 B = 0.007768 C = 0.006994 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 694.874360 B = 3603.576548 C = 4002.193944 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.971 5.971 2 C -0.078 4.078 3 Si 0.971 3.029 4 H -0.279 1.279 5 H -0.294 1.294 6 H -0.279 1.279 7 C -0.239 4.239 8 H 0.070 0.930 9 N -0.738 5.738 10 C 0.176 3.824 11 H 0.029 0.971 12 C -0.127 4.127 13 C -0.111 4.111 14 C -0.108 4.108 15 C -0.076 4.076 16 H 0.065 0.935 17 C -0.109 4.109 18 C -0.114 4.114 19 C -0.116 4.116 20 C -0.109 4.109 21 C -0.076 4.076 22 H 0.044 0.956 23 H 0.250 0.750 24 H 0.373 0.627 25 H 0.031 0.969 26 H 0.048 0.952 27 H 0.068 0.932 28 H 0.058 0.942 29 H 0.067 0.933 30 H 0.081 0.919 31 H 0.081 0.919 32 H 0.055 0.945 33 H 0.070 0.930 34 H 0.073 0.927 35 H 0.064 0.936 36 H 0.051 0.949 37 H 0.067 0.933 38 H 0.030 0.970 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.745 -16.994 -0.330 17.218 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.622 5.622 2 C -0.270 4.270 3 Si 0.800 3.200 4 H -0.205 1.205 5 H -0.221 1.221 6 H -0.205 1.205 7 C -0.371 4.371 8 H 0.088 0.912 9 N -0.379 5.379 10 C 0.068 3.932 11 H 0.047 0.953 12 C -0.168 4.168 13 C -0.149 4.149 14 C -0.145 4.145 15 C -0.095 4.095 16 H 0.084 0.916 17 C -0.146 4.146 18 C -0.151 4.151 19 C -0.154 4.154 20 C -0.146 4.146 21 C -0.095 4.095 22 H 0.063 0.937 23 H 0.059 0.941 24 H 0.206 0.794 25 H 0.050 0.950 26 H 0.067 0.933 27 H 0.087 0.913 28 H 0.077 0.923 29 H 0.086 0.914 30 H 0.099 0.901 31 H 0.099 0.901 32 H 0.073 0.927 33 H 0.089 0.911 34 H 0.092 0.908 35 H 0.083 0.917 36 H 0.070 0.930 37 H 0.086 0.914 38 H 0.049 0.951 Dipole moment (debyes) X Y Z Total from point charges 2.889 -16.865 -0.313 17.114 hybrid contribution -0.109 1.710 0.019 1.713 sum 2.780 -15.156 -0.294 15.411 Atomic orbital electron populations 1.69818 1.06549 1.25952 1.59898 1.25533 0.96384 1.00957 1.04146 0.85239 0.77216 0.79398 0.78102 1.20544 1.22064 1.20498 1.19600 0.91272 0.85597 1.40625 0.91156 1.42739 1.05561 1.00950 1.88617 1.20451 0.93552 0.85040 0.94205 0.95259 1.22091 0.99280 0.96817 0.98566 1.21496 0.98309 0.94072 1.01046 1.21629 0.99797 0.97996 0.95067 1.21083 0.97813 0.93359 0.97223 0.91625 1.21530 0.96038 0.98332 0.98711 1.21542 0.96322 0.96220 1.01017 1.21523 0.98106 0.95336 1.00399 1.21514 0.95648 0.97817 0.99650 1.21231 0.95489 0.94854 0.97965 0.93708 0.94127 0.79362 0.95046 0.93297 0.91285 0.92293 0.91416 0.90066 0.90067 0.92650 0.91100 0.90819 0.91741 0.93025 0.91447 0.95113 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.97 -61.27 13.06 21.65 0.28 -60.99 16 2 C -0.08 -4.65 5.50 84.86 0.47 -4.19 16 3 Si 0.97 47.62 29.55 68.60 2.03 49.65 16 4 H -0.28 -13.20 7.11 99.48 0.71 -12.49 16 5 H -0.29 -14.46 7.11 99.48 0.71 -13.75 16 6 H -0.28 -13.17 7.11 99.48 0.71 -12.46 16 7 C -0.24 -13.85 9.93 84.04 0.83 -13.02 16 8 H 0.07 3.95 7.83 -2.91 -0.02 3.92 16 9 N -0.74 -39.06 5.04 -322.94 -1.63 -40.68 16 10 C 0.18 7.31 2.46 44.99 0.11 7.42 16 11 H 0.03 1.28 8.08 -2.39 -0.02 1.26 16 12 C -0.13 -4.72 5.23 30.59 0.16 -4.56 16 13 C -0.11 -3.02 5.92 30.59 0.18 -2.84 16 14 C -0.11 -2.49 4.59 30.59 0.14 -2.35 16 15 C -0.08 -1.95 2.47 -10.80 -0.03 -1.98 16 16 H 0.07 1.70 8.14 -2.39 -0.02 1.68 16 17 C -0.11 -2.26 5.45 30.59 0.17 -2.10 16 18 C -0.11 -2.31 5.65 30.59 0.17 -2.14 16 19 C -0.12 -3.03 5.92 30.59 0.18 -2.84 16 20 C -0.11 -3.60 4.41 30.58 0.13 -3.47 16 21 C -0.08 -2.61 2.15 -10.81 -0.02 -2.63 16 22 H 0.04 1.70 8.14 -2.39 -0.02 1.68 16 23 H 0.25 15.30 8.31 -92.70 -0.77 14.53 16 24 H 0.37 21.08 6.06 -92.71 -0.56 20.52 16 25 H 0.03 1.29 8.14 -2.39 -0.02 1.27 16 26 H 0.05 1.87 6.43 -2.39 -0.02 1.85 16 27 H 0.07 1.65 8.14 -2.39 -0.02 1.63 16 28 H 0.06 1.57 8.14 -2.39 -0.02 1.55 16 29 H 0.07 1.57 4.81 -2.39 -0.01 1.56 16 30 H 0.08 1.48 8.14 -2.38 -0.02 1.46 16 31 H 0.08 1.34 8.14 -2.39 -0.02 1.32 16 32 H 0.05 1.21 8.14 -2.39 -0.02 1.19 16 33 H 0.07 1.35 6.43 -2.39 -0.02 1.34 16 34 H 0.07 1.25 8.14 -2.39 -0.02 1.23 16 35 H 0.06 1.55 8.14 -2.39 -0.02 1.54 16 36 H 0.05 1.40 8.14 -2.39 -0.02 1.38 16 37 H 0.07 2.16 4.81 -2.39 -0.01 2.15 16 38 H 0.03 1.23 6.50 -2.39 -0.02 1.22 16 Total: -1.00 -64.79 277.45 3.64 -61.14 By element: Atomic # 1 Polarization: 25.10 SS G_CDS: 0.46 Total: 25.56 kcal Atomic # 6 Polarization: -37.18 SS G_CDS: 2.50 Total: -34.68 kcal Atomic # 7 Polarization: -100.33 SS G_CDS: -1.35 Total: -101.67 kcal Atomic # 14 Polarization: 47.62 SS G_CDS: 2.03 Total: 49.65 kcal Total: -64.79 3.64 -61.14 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000306342555.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 19.117 kcal (2) G-P(sol) polarization free energy of solvation -64.786 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -45.669 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.645 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -61.141 kcal (6) G-S(sol) free energy of system = (1) + (5) -42.024 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.31 seconds