Wall clock time and date at job start Mon Mar 30 2020 03:11:41 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31621 * 1 3 3 Si 1.86803 * 120.00088 * 2 1 4 4 H 1.48494 * 109.47076 * 240.00045 * 3 2 1 5 5 H 1.48501 * 109.46738 * 0.02562 * 3 2 1 6 6 H 1.48497 * 109.47017 * 119.99871 * 3 2 1 7 7 C 1.38811 * 119.99905 * 179.97438 * 2 1 3 8 8 H 1.07998 * 119.99945 * 179.97438 * 7 2 1 9 9 N 1.36940 * 120.00230 * 0.02562 * 7 2 1 10 10 C 1.46499 * 119.99991 * 179.97438 * 9 7 2 11 11 H 1.08992 * 109.47397 * 34.99744 * 10 9 7 12 12 C 1.53000 * 109.46840 * 274.99409 * 10 9 7 13 13 C 1.52997 * 109.47060 * 180.02562 * 12 10 9 14 14 C 1.52999 * 109.47317 * 59.99960 * 13 12 10 15 15 H 1.09002 * 109.46716 * 60.00091 * 14 13 12 16 16 C 1.53002 * 109.47628 * 180.02562 * 14 13 12 17 17 C 1.52996 * 109.46891 * 59.99991 * 16 14 13 18 18 C 1.52997 * 109.46975 * 60.00408 * 17 16 14 19 19 C 1.52997 * 109.47232 * 299.99763 * 18 17 16 20 20 C 1.52997 * 109.47457 * 60.00070 * 19 18 17 21 21 H 1.09001 * 109.46989 * 59.99671 * 20 19 18 22 22 C 1.52997 * 109.47457 * 179.97438 * 20 19 18 23 23 H 0.97001 * 119.99978 * 359.97438 * 1 2 3 24 24 H 0.97002 * 119.99599 * 359.97438 * 9 7 2 25 25 H 1.09002 * 109.47398 * 300.00326 * 12 10 9 26 26 H 1.09001 * 109.47194 * 60.00507 * 12 10 9 27 27 H 1.08996 * 109.47853 * 180.02562 * 13 12 10 28 28 H 1.09002 * 109.47153 * 300.00319 * 13 12 10 29 29 H 1.08996 * 109.46698 * 300.00222 * 16 14 13 30 30 H 1.09001 * 109.47142 * 180.02562 * 16 14 13 31 31 H 1.09001 * 109.47372 * 300.00036 * 17 16 14 32 32 H 1.09000 * 109.46870 * 180.02562 * 17 16 14 33 33 H 1.09002 * 109.47045 * 179.97438 * 18 17 16 34 34 H 1.08998 * 109.47624 * 60.00081 * 18 17 16 35 35 H 1.09001 * 109.47289 * 299.99925 * 19 18 17 36 36 H 1.09004 * 109.47261 * 180.02562 * 19 18 17 37 37 H 1.08993 * 109.47194 * 299.99651 * 22 20 19 38 38 H 1.09002 * 109.46695 * 179.97438 * 22 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2503 1.6177 0.0000 4 1 3.1040 1.6964 -1.2125 5 1 1.2852 2.7464 0.0006 6 1 3.1040 1.6964 1.2125 7 6 2.0102 -1.2021 0.0005 8 1 3.0902 -1.2022 0.0001 9 7 1.3256 -2.3881 0.0005 10 6 2.0581 -3.6568 0.0005 11 1 2.9688 -3.5506 0.5899 12 6 2.4218 -4.0356 -1.4365 13 6 3.1863 -5.3609 -1.4366 14 6 2.3087 -6.4560 -0.8271 15 1 1.3980 -6.5618 -1.4166 16 6 3.0734 -7.7812 -0.8266 17 6 4.3514 -7.6322 0.0012 18 6 3.9871 -7.2531 1.4380 19 6 3.2224 -5.9279 1.4375 20 6 1.9444 -6.0768 0.6097 21 1 1.3191 -6.8570 1.0439 22 6 1.1793 -4.7518 0.6098 23 1 -0.4850 0.8401 0.0004 24 1 0.3556 -2.3881 0.0005 25 1 1.5111 -4.1419 -2.0259 26 1 3.0468 -3.2553 -1.8709 27 1 3.4459 -5.6307 -2.4603 28 1 4.0970 -5.2551 -0.8471 29 1 3.3329 -8.0513 -1.8502 30 1 2.4479 -8.5614 -0.3928 31 1 4.9767 -6.8521 -0.4331 32 1 4.8964 -8.5762 0.0011 33 1 4.8976 -7.1474 2.0278 34 1 3.3619 -8.0332 1.8722 35 1 3.8477 -5.1478 1.0033 36 1 2.9633 -5.6576 2.4612 37 1 0.9198 -4.4823 1.6335 38 1 0.2691 -4.8579 0.0197 RHF calculation, no. of doubly occupied orbitals= 43 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000306543043.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:11:41 Heat of formation + Delta-G solvation = -27.772994 kcal Electronic energy + Delta-G solvation = -16170.780285 eV Core-core repulsion = 13818.462802 eV Total energy + Delta-G solvation = -2352.317483 eV No. of doubly occupied orbitals = 43 Molecular weight (most abundant/longest-lived isotopes) = 223.163 amu Computer time = 0.30 seconds Orbital eigenvalues (eV) -39.94224 -35.59842 -33.03279 -31.89575 -30.58026 -29.07475 -27.14859 -23.73766 -22.87364 -21.88793 -21.28917 -20.02516 -17.73672 -16.90872 -15.39862 -15.15548 -14.48160 -14.13731 -13.91851 -13.49189 -13.10167 -12.88578 -12.66810 -12.09330 -11.86239 -11.76317 -11.68761 -11.24218 -10.90580 -10.84699 -10.77711 -10.60526 -10.26728 -10.09924 -10.06198 -9.80904 -9.59518 -9.41422 -9.23973 -8.78403 -6.87018 -5.70406 -2.98090 3.47167 3.51369 3.52462 4.63677 4.80863 4.86292 4.89741 5.29259 5.34258 5.47334 5.50428 5.58714 5.61015 5.67952 5.79057 5.84138 5.90654 6.00863 6.06643 6.08849 6.09985 6.16124 6.24459 6.27584 6.35475 6.46196 6.49307 6.60985 6.70157 6.74811 6.76571 6.90900 7.11868 7.27368 7.75249 8.49127 9.59451 10.20150 10.54488 11.52592 Molecular weight = 223.16amu Principal moments of inertia in cm(-1) A = 0.048811 B = 0.006515 C = 0.006475 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 573.506032 B = 4296.679389 C = 4323.348222 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.935 5.935 2 C -0.016 4.016 3 Si 0.905 3.095 4 H -0.287 1.287 5 H -0.291 1.291 6 H -0.287 1.287 7 C -0.234 4.234 8 H 0.068 0.932 9 N -0.727 5.727 10 C 0.179 3.821 11 H 0.047 0.953 12 C -0.135 4.135 13 C -0.113 4.113 14 C -0.081 4.081 15 H 0.065 0.935 16 C -0.113 4.113 17 C -0.121 4.121 18 C -0.117 4.117 19 C -0.119 4.119 20 C -0.074 4.074 21 H 0.061 0.939 22 C -0.119 4.119 23 H 0.254 0.746 24 H 0.382 0.618 25 H 0.051 0.949 26 H 0.057 0.943 27 H 0.049 0.951 28 H 0.062 0.938 29 H 0.056 0.944 30 H 0.056 0.944 31 H 0.065 0.935 32 H 0.053 0.947 33 H 0.056 0.944 34 H 0.056 0.944 35 H 0.072 0.928 36 H 0.058 0.942 37 H 0.060 0.940 38 H 0.057 0.943 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.325 -15.583 0.127 16.819 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.584 5.584 2 C -0.212 4.212 3 Si 0.736 3.264 4 H -0.214 1.214 5 H -0.217 1.217 6 H -0.213 1.213 7 C -0.366 4.366 8 H 0.086 0.914 9 N -0.367 5.367 10 C 0.069 3.931 11 H 0.065 0.935 12 C -0.175 4.175 13 C -0.151 4.151 14 C -0.099 4.099 15 H 0.083 0.917 16 C -0.150 4.150 17 C -0.158 4.158 18 C -0.155 4.155 19 C -0.157 4.157 20 C -0.093 4.093 21 H 0.079 0.921 22 C -0.158 4.158 23 H 0.064 0.936 24 H 0.216 0.784 25 H 0.070 0.930 26 H 0.076 0.924 27 H 0.067 0.933 28 H 0.081 0.919 29 H 0.075 0.925 30 H 0.075 0.925 31 H 0.084 0.916 32 H 0.072 0.928 33 H 0.074 0.926 34 H 0.075 0.925 35 H 0.091 0.909 36 H 0.077 0.923 37 H 0.079 0.921 38 H 0.075 0.925 Dipole moment (debyes) X Y Z Total from point charges 6.435 -15.417 0.145 16.706 hybrid contribution 0.101 0.975 -0.101 0.985 sum 6.536 -14.442 0.044 15.852 Atomic orbital electron populations 1.69654 1.05081 1.25603 1.58077 1.24723 0.95487 0.97583 1.03359 0.86297 0.78526 0.83778 0.77796 1.21364 1.21737 1.21350 1.19212 0.90914 0.84273 1.42179 0.91367 1.42463 1.05756 0.99925 1.88574 1.20250 0.94329 0.85740 0.92786 0.93485 1.22244 0.99488 0.95106 1.00692 1.21666 0.98752 0.95339 0.99369 1.21118 0.98317 0.94185 0.96290 0.91651 1.21555 0.96672 0.97405 0.99417 1.21562 0.97609 1.00821 0.95811 1.21522 0.99681 0.97858 0.96414 1.21691 0.96891 0.97211 0.99864 1.21047 0.96129 0.97242 0.94883 0.92101 1.21839 0.98599 0.94266 1.01071 0.93572 0.78448 0.92991 0.92410 0.93264 0.91908 0.92492 0.92504 0.91644 0.92826 0.92555 0.92544 0.90927 0.92287 0.92123 0.92465 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.94 -28.80 13.06 55.49 0.72 -28.07 16 2 C -0.02 -0.47 5.50 -17.43 -0.10 -0.56 16 3 Si 0.90 22.78 29.55 -169.99 -5.02 17.76 16 4 H -0.29 -7.11 7.11 56.52 0.40 -6.70 16 5 H -0.29 -7.38 7.11 56.52 0.40 -6.98 16 6 H -0.29 -7.09 7.11 56.52 0.40 -6.69 16 7 C -0.23 -6.64 9.93 -15.06 -0.15 -6.79 16 8 H 0.07 1.88 7.83 -52.49 -0.41 1.47 16 9 N -0.73 -18.70 5.12 -53.40 -0.27 -18.97 16 10 C 0.18 3.63 2.50 -67.90 -0.17 3.46 16 11 H 0.05 0.99 6.37 -51.93 -0.33 0.66 16 12 C -0.13 -2.50 5.50 -26.73 -0.15 -2.65 16 13 C -0.11 -1.66 4.59 -26.73 -0.12 -1.78 16 14 C -0.08 -1.07 2.46 -90.62 -0.22 -1.29 16 15 H 0.07 0.89 8.14 -51.93 -0.42 0.47 16 16 C -0.11 -1.25 5.45 -26.73 -0.15 -1.40 16 17 C -0.12 -1.29 5.65 -26.73 -0.15 -1.44 16 18 C -0.12 -1.30 5.92 -26.73 -0.16 -1.46 16 19 C -0.12 -1.59 4.59 -26.73 -0.12 -1.71 16 20 C -0.07 -1.03 2.46 -90.62 -0.22 -1.26 16 21 H 0.06 0.80 8.14 -51.93 -0.42 0.37 16 22 C -0.12 -2.06 4.92 -26.70 -0.13 -2.19 16 23 H 0.25 7.60 8.31 -40.82 -0.34 7.26 16 24 H 0.38 10.47 7.80 -40.82 -0.32 10.15 16 25 H 0.05 1.00 8.14 -51.93 -0.42 0.57 16 26 H 0.06 1.17 8.14 -51.93 -0.42 0.75 16 27 H 0.05 0.67 8.14 -51.93 -0.42 0.25 16 28 H 0.06 0.91 4.81 -51.93 -0.25 0.66 16 29 H 0.06 0.60 8.14 -51.93 -0.42 0.17 16 30 H 0.06 0.60 8.14 -51.93 -0.42 0.17 16 31 H 0.06 0.73 6.43 -51.93 -0.33 0.40 16 32 H 0.05 0.50 8.14 -51.93 -0.42 0.08 16 33 H 0.06 0.58 8.14 -51.93 -0.42 0.16 16 34 H 0.06 0.59 8.14 -51.93 -0.42 0.17 16 35 H 0.07 1.06 4.81 -51.93 -0.25 0.81 16 36 H 0.06 0.79 8.14 -51.93 -0.42 0.37 16 37 H 0.06 1.09 8.14 -51.93 -0.42 0.67 16 38 H 0.06 1.00 8.14 -51.93 -0.42 0.58 16 LS Contribution 280.72 15.07 4.23 4.23 Total: -1.00 -29.63 280.72 -8.71 -38.34 By element: Atomic # 1 Polarization: 12.33 SS G_CDS: -6.52 Total: 5.81 kcal Atomic # 6 Polarization: -17.24 SS G_CDS: -1.84 Total: -19.08 kcal Atomic # 7 Polarization: -47.50 SS G_CDS: 0.45 Total: -47.05 kcal Atomic # 14 Polarization: 22.78 SS G_CDS: -5.02 Total: 17.76 kcal Total LS contribution 4.23 Total: 4.23 kcal Total: -29.63 -8.71 -38.34 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000306543043.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 10.564 kcal (2) G-P(sol) polarization free energy of solvation -29.631 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -19.067 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.706 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.337 kcal (6) G-S(sol) free energy of system = (1) + (5) -27.773 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.30 seconds