Wall clock time and date at job start Mon Mar 30 2020 03:11:41 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31621 * 1 3 3 Si 1.86803 * 120.00088 * 2 1 4 4 H 1.48494 * 109.47076 * 240.00045 * 3 2 1 5 5 H 1.48501 * 109.46738 * 0.02562 * 3 2 1 6 6 H 1.48497 * 109.47017 * 119.99871 * 3 2 1 7 7 C 1.38811 * 119.99905 * 179.97438 * 2 1 3 8 8 H 1.07998 * 119.99945 * 179.97438 * 7 2 1 9 9 N 1.36940 * 120.00230 * 0.02562 * 7 2 1 10 10 C 1.46499 * 119.99991 * 179.97438 * 9 7 2 11 11 H 1.08992 * 109.47397 * 34.99744 * 10 9 7 12 12 C 1.53000 * 109.46840 * 274.99409 * 10 9 7 13 13 C 1.52997 * 109.47060 * 180.02562 * 12 10 9 14 14 C 1.52999 * 109.47317 * 59.99960 * 13 12 10 15 15 H 1.09002 * 109.46716 * 60.00091 * 14 13 12 16 16 C 1.53002 * 109.47628 * 180.02562 * 14 13 12 17 17 C 1.52996 * 109.46891 * 59.99991 * 16 14 13 18 18 C 1.52997 * 109.46975 * 60.00408 * 17 16 14 19 19 C 1.52997 * 109.47232 * 299.99763 * 18 17 16 20 20 C 1.52997 * 109.47457 * 60.00070 * 19 18 17 21 21 H 1.09001 * 109.46989 * 59.99671 * 20 19 18 22 22 C 1.52997 * 109.47457 * 179.97438 * 20 19 18 23 23 H 0.97001 * 119.99978 * 359.97438 * 1 2 3 24 24 H 0.97002 * 119.99599 * 359.97438 * 9 7 2 25 25 H 1.09002 * 109.47398 * 300.00326 * 12 10 9 26 26 H 1.09001 * 109.47194 * 60.00507 * 12 10 9 27 27 H 1.08996 * 109.47853 * 180.02562 * 13 12 10 28 28 H 1.09002 * 109.47153 * 300.00319 * 13 12 10 29 29 H 1.08996 * 109.46698 * 300.00222 * 16 14 13 30 30 H 1.09001 * 109.47142 * 180.02562 * 16 14 13 31 31 H 1.09001 * 109.47372 * 300.00036 * 17 16 14 32 32 H 1.09000 * 109.46870 * 180.02562 * 17 16 14 33 33 H 1.09002 * 109.47045 * 179.97438 * 18 17 16 34 34 H 1.08998 * 109.47624 * 60.00081 * 18 17 16 35 35 H 1.09001 * 109.47289 * 299.99925 * 19 18 17 36 36 H 1.09004 * 109.47261 * 180.02562 * 19 18 17 37 37 H 1.08993 * 109.47194 * 299.99651 * 22 20 19 38 38 H 1.09002 * 109.46695 * 179.97438 * 22 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2503 1.6177 0.0000 4 1 3.1040 1.6964 -1.2125 5 1 1.2852 2.7464 0.0006 6 1 3.1040 1.6964 1.2125 7 6 2.0102 -1.2021 0.0005 8 1 3.0902 -1.2022 0.0001 9 7 1.3256 -2.3881 0.0005 10 6 2.0581 -3.6568 0.0005 11 1 2.9688 -3.5506 0.5899 12 6 2.4218 -4.0356 -1.4365 13 6 3.1863 -5.3609 -1.4366 14 6 2.3087 -6.4560 -0.8271 15 1 1.3980 -6.5618 -1.4166 16 6 3.0734 -7.7812 -0.8266 17 6 4.3514 -7.6322 0.0012 18 6 3.9871 -7.2531 1.4380 19 6 3.2224 -5.9279 1.4375 20 6 1.9444 -6.0768 0.6097 21 1 1.3191 -6.8570 1.0439 22 6 1.1793 -4.7518 0.6098 23 1 -0.4850 0.8401 0.0004 24 1 0.3556 -2.3881 0.0005 25 1 1.5111 -4.1419 -2.0259 26 1 3.0468 -3.2553 -1.8709 27 1 3.4459 -5.6307 -2.4603 28 1 4.0970 -5.2551 -0.8471 29 1 3.3329 -8.0513 -1.8502 30 1 2.4479 -8.5614 -0.3928 31 1 4.9767 -6.8521 -0.4331 32 1 4.8964 -8.5762 0.0011 33 1 4.8976 -7.1474 2.0278 34 1 3.3619 -8.0332 1.8722 35 1 3.8477 -5.1478 1.0033 36 1 2.9633 -5.6576 2.4612 37 1 0.9198 -4.4823 1.6335 38 1 0.2691 -4.8579 0.0197 RHF calculation, no. of doubly occupied orbitals= 43 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000306543043.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:11:41 Heat of formation + Delta-G solvation = -44.371287 kcal Electronic energy + Delta-G solvation = -16171.500041 eV Core-core repulsion = 13818.462802 eV Total energy + Delta-G solvation = -2353.037239 eV No. of doubly occupied orbitals = 43 Molecular weight (most abundant/longest-lived isotopes) = 223.163 amu Computer time = 0.31 seconds Orbital eigenvalues (eV) -41.13145 -37.16075 -34.77344 -33.10644 -32.29506 -30.36841 -28.66433 -25.60586 -24.20087 -23.02151 -22.54092 -21.37932 -19.37203 -18.56930 -16.98873 -16.36036 -15.94962 -15.67523 -15.16567 -14.93330 -14.71137 -14.25892 -14.00662 -13.43225 -13.20259 -13.00618 -12.85701 -12.76727 -12.72243 -12.36660 -12.20311 -12.03520 -11.96026 -11.66609 -11.46075 -11.27765 -10.89669 -10.71798 -10.59781 -10.56692 -8.98413 -7.93960 -5.21984 1.44993 1.48383 1.54489 2.55974 3.38631 3.73218 3.75378 3.82913 4.14050 4.23063 4.27358 4.38252 4.44315 4.59390 4.62577 4.63986 4.68574 4.76704 4.82994 4.86809 4.95226 5.00505 5.11724 5.19975 5.27398 5.30314 5.33179 5.39915 5.45678 5.49697 5.52092 5.55675 5.64900 5.67615 5.80664 6.29188 7.33757 8.12583 8.35379 9.29808 Molecular weight = 223.16amu Principal moments of inertia in cm(-1) A = 0.048811 B = 0.006515 C = 0.006475 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 573.506032 B = 4296.679389 C = 4323.348222 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.972 5.972 2 C -0.078 4.078 3 Si 0.972 3.028 4 H -0.279 1.279 5 H -0.294 1.294 6 H -0.278 1.278 7 C -0.238 4.238 8 H 0.072 0.928 9 N -0.741 5.741 10 C 0.174 3.826 11 H 0.040 0.960 12 C -0.127 4.127 13 C -0.104 4.104 14 C -0.079 4.079 15 H 0.063 0.937 16 C -0.107 4.107 17 C -0.120 4.120 18 C -0.113 4.113 19 C -0.119 4.119 20 C -0.068 4.068 21 H 0.078 0.922 22 C -0.112 4.112 23 H 0.250 0.750 24 H 0.370 0.630 25 H 0.040 0.960 26 H 0.033 0.967 27 H 0.064 0.936 28 H 0.067 0.933 29 H 0.068 0.932 30 H 0.069 0.931 31 H 0.058 0.942 32 H 0.073 0.927 33 H 0.064 0.936 34 H 0.067 0.933 35 H 0.055 0.945 36 H 0.053 0.947 37 H 0.048 0.952 38 H 0.051 0.949 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.772 -17.444 0.088 19.097 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.623 5.623 2 C -0.270 4.270 3 Si 0.800 3.200 4 H -0.205 1.205 5 H -0.220 1.220 6 H -0.204 1.204 7 C -0.370 4.370 8 H 0.090 0.910 9 N -0.380 5.380 10 C 0.067 3.933 11 H 0.058 0.942 12 C -0.167 4.167 13 C -0.142 4.142 14 C -0.097 4.097 15 H 0.081 0.919 16 C -0.145 4.145 17 C -0.158 4.158 18 C -0.150 4.150 19 C -0.157 4.157 20 C -0.087 4.087 21 H 0.097 0.903 22 C -0.151 4.151 23 H 0.059 0.941 24 H 0.201 0.799 25 H 0.059 0.941 26 H 0.052 0.948 27 H 0.083 0.917 28 H 0.086 0.914 29 H 0.086 0.914 30 H 0.088 0.912 31 H 0.077 0.923 32 H 0.092 0.908 33 H 0.083 0.917 34 H 0.086 0.914 35 H 0.073 0.927 36 H 0.072 0.928 37 H 0.067 0.933 38 H 0.070 0.930 Dipole moment (debyes) X Y Z Total from point charges 7.923 -17.320 0.104 19.046 hybrid contribution -0.346 1.517 -0.079 1.558 sum 7.577 -15.802 0.025 17.525 Atomic orbital electron populations 1.69819 1.06615 1.26020 1.59875 1.25552 0.96382 1.01039 1.04055 0.85236 0.77235 0.79317 0.78169 1.20489 1.22049 1.20377 1.19584 0.91278 0.85460 1.40691 0.91017 1.42708 1.05364 1.01257 1.88720 1.20471 0.94120 0.84679 0.94052 0.94169 1.22076 0.99095 0.96893 0.98660 1.21597 0.98531 0.93383 1.00703 1.21106 0.98321 0.95047 0.95261 0.91873 1.21518 0.96636 0.95877 1.00439 1.21576 0.97454 1.01615 0.95132 1.21494 0.99858 0.96468 0.97177 1.21667 0.96496 0.98341 0.99170 1.21025 0.96290 0.95364 0.95995 0.90340 1.21754 0.98291 0.95234 0.99793 0.94083 0.79898 0.94082 0.94776 0.91689 0.91447 0.91351 0.91220 0.92335 0.90841 0.91715 0.91395 0.92664 0.92825 0.93309 0.93023 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.97 -61.31 13.06 21.65 0.28 -61.02 16 2 C -0.08 -4.65 5.50 84.86 0.47 -4.18 16 3 Si 0.97 47.37 29.55 68.60 2.03 49.40 16 4 H -0.28 -13.10 7.11 99.48 0.71 -12.39 16 5 H -0.29 -14.38 7.11 99.48 0.71 -13.67 16 6 H -0.28 -13.01 7.11 99.48 0.71 -12.30 16 7 C -0.24 -13.75 9.93 84.03 0.83 -12.92 16 8 H 0.07 3.99 7.83 -2.91 -0.02 3.97 16 9 N -0.74 -39.28 5.12 -322.86 -1.65 -40.93 16 10 C 0.17 7.22 2.50 45.01 0.11 7.33 16 11 H 0.04 1.72 6.37 -2.39 -0.02 1.70 16 12 C -0.13 -4.75 5.50 30.59 0.17 -4.58 16 13 C -0.10 -2.89 4.59 30.59 0.14 -2.75 16 14 C -0.08 -1.91 2.46 -10.79 -0.03 -1.93 16 15 H 0.06 1.58 8.14 -2.39 -0.02 1.56 16 16 C -0.11 -1.97 5.45 30.59 0.17 -1.81 16 17 C -0.12 -2.13 5.65 30.59 0.17 -1.96 16 18 C -0.11 -2.14 5.92 30.59 0.18 -1.96 16 19 C -0.12 -2.98 4.59 30.59 0.14 -2.84 16 20 C -0.07 -1.78 2.46 -10.79 -0.03 -1.80 16 21 H 0.08 1.84 8.14 -2.39 -0.02 1.82 16 22 C -0.11 -3.89 4.92 30.61 0.15 -3.74 16 23 H 0.25 15.30 8.31 -92.71 -0.77 14.53 16 24 H 0.37 21.04 7.80 -92.71 -0.72 20.32 16 25 H 0.04 1.60 8.14 -2.39 -0.02 1.58 16 26 H 0.03 1.40 8.14 -2.39 -0.02 1.38 16 27 H 0.06 1.62 8.14 -2.39 -0.02 1.60 16 28 H 0.07 1.83 4.81 -2.39 -0.01 1.82 16 29 H 0.07 1.14 8.14 -2.39 -0.02 1.12 16 30 H 0.07 1.15 8.14 -2.39 -0.02 1.13 16 31 H 0.06 1.13 6.43 -2.39 -0.02 1.11 16 32 H 0.07 1.06 8.14 -2.39 -0.02 1.04 16 33 H 0.06 1.14 8.14 -2.39 -0.02 1.12 16 34 H 0.07 1.17 8.14 -2.39 -0.02 1.15 16 35 H 0.05 1.56 4.81 -2.39 -0.01 1.55 16 36 H 0.05 1.38 8.14 -2.38 -0.02 1.36 16 37 H 0.05 1.78 8.14 -2.39 -0.02 1.76 16 38 H 0.05 1.82 8.14 -2.39 -0.02 1.80 16 Total: -1.00 -64.06 280.72 3.44 -60.62 By element: Atomic # 1 Polarization: 24.77 SS G_CDS: 0.30 Total: 25.07 kcal Atomic # 6 Polarization: -35.62 SS G_CDS: 2.48 Total: -33.14 kcal Atomic # 7 Polarization: -100.58 SS G_CDS: -1.37 Total: -101.95 kcal Atomic # 14 Polarization: 47.37 SS G_CDS: 2.03 Total: 49.40 kcal Total: -64.06 3.44 -60.62 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000306543043.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 16.253 kcal (2) G-P(sol) polarization free energy of solvation -64.060 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -47.807 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.436 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -60.624 kcal (6) G-S(sol) free energy of system = (1) + (5) -44.371 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.31 seconds