Wall clock time and date at job start Mon Mar 30 2020 03:11:43 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31615 * 1 3 3 Si 1.86800 * 120.00114 * 2 1 4 4 H 1.48499 * 109.47158 * 269.99446 * 3 2 1 5 5 H 1.48496 * 109.47469 * 29.99678 * 3 2 1 6 6 H 1.48501 * 109.47139 * 149.99936 * 3 2 1 7 7 C 1.38809 * 120.00185 * 179.97438 * 2 1 3 8 8 H 1.08002 * 120.00674 * 180.02562 * 7 2 1 9 9 N 1.36939 * 119.99920 * 0.02562 * 7 2 1 10 10 C 1.46505 * 120.00290 * 179.97438 * 9 7 2 11 11 H 1.08992 * 109.46821 * 34.99894 * 10 9 7 12 12 C 1.53006 * 109.46675 * 275.00083 * 10 9 7 13 13 C 1.53005 * 109.46542 * 179.97438 * 12 10 9 14 14 C 1.53002 * 109.46982 * 60.00168 * 13 12 10 15 15 H 1.09000 * 109.47312 * 59.99678 * 14 13 12 16 16 C 1.52997 * 109.47092 * 179.97438 * 14 13 12 17 17 C 1.52999 * 109.47592 * 180.02562 * 16 14 13 18 18 C 1.53006 * 109.46626 * 300.00035 * 17 16 14 19 19 C 1.52997 * 109.47164 * 59.99702 * 18 17 16 20 20 C 1.52996 * 109.46969 * 299.99739 * 14 13 12 21 21 H 1.08996 * 109.47134 * 299.99612 * 20 14 13 22 22 C 1.52995 * 109.47577 * 60.00452 * 20 14 13 23 23 H 0.97006 * 119.99772 * 0.02562 * 1 2 3 24 24 H 0.96998 * 119.99687 * 0.02562 * 9 7 2 25 25 H 1.08998 * 109.46876 * 60.00369 * 12 10 9 26 26 H 1.09000 * 109.47192 * 299.99766 * 12 10 9 27 27 H 1.09000 * 109.47360 * 299.99876 * 13 12 10 28 28 H 1.09002 * 109.46935 * 179.97438 * 13 12 10 29 29 H 1.09000 * 109.47140 * 59.99774 * 16 14 13 30 30 H 1.09002 * 109.47045 * 299.99867 * 16 14 13 31 31 H 1.08993 * 109.47839 * 180.02562 * 17 16 14 32 32 H 1.09000 * 109.47160 * 59.99666 * 17 16 14 33 33 H 1.09001 * 109.46998 * 179.97438 * 18 17 16 34 34 H 1.09000 * 109.47050 * 299.99699 * 18 17 16 35 35 H 1.09000 * 109.47140 * 60.00051 * 19 18 17 36 36 H 1.09001 * 109.47230 * 179.97438 * 19 18 17 37 37 H 1.08999 * 109.47330 * 59.98970 * 22 20 14 38 38 H 1.08992 * 109.47458 * 179.97438 * 22 20 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6177 0.0000 4 1 2.4978 2.0463 -1.4001 5 1 1.4477 2.6527 0.6999 6 1 3.5477 1.4401 0.7001 7 6 2.0102 -1.2021 0.0005 8 1 3.0903 -1.2022 0.0010 9 7 1.3256 -2.3880 0.0005 10 6 2.0580 -3.6568 0.0005 11 1 2.9687 -3.5506 0.5899 12 6 2.4219 -4.0356 -1.4366 13 6 3.1874 -5.3603 -1.4365 14 6 2.3106 -6.4559 -0.8267 15 1 1.3999 -6.5626 -1.4160 16 6 3.0759 -7.7808 -0.8272 17 6 2.1990 -8.8766 -0.2180 18 6 1.8351 -8.4983 1.2192 19 6 1.0698 -7.1735 1.2197 20 6 1.9468 -6.0771 0.6103 21 1 2.8575 -5.9705 1.1996 22 6 1.1813 -4.7524 0.6103 23 1 -0.4850 0.8401 -0.0004 24 1 0.3556 -2.3880 -0.0002 25 1 3.0469 -3.2552 -1.8708 26 1 1.5112 -4.1418 -2.0260 27 1 4.0982 -5.2537 -0.8472 28 1 3.4463 -5.6304 -2.4603 29 1 3.9868 -7.6744 -0.2381 30 1 3.3348 -8.0505 -1.8511 31 1 2.7443 -9.8203 -0.2179 32 1 1.2883 -8.9828 -0.8074 33 1 1.2100 -9.2788 1.6532 34 1 2.7458 -8.3921 1.8087 35 1 0.1591 -7.2797 0.6303 36 1 0.8102 -6.9042 2.2435 37 1 0.2706 -4.8590 0.0209 38 1 0.9217 -4.4828 1.6340 RHF calculation, no. of doubly occupied orbitals= 43 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000306543045.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:11:43 Heat of formation + Delta-G solvation = -34.696291 kcal Electronic energy + Delta-G solvation = -15900.368065 eV Core-core repulsion = 13547.750365 eV Total energy + Delta-G solvation = -2352.617699 eV No. of doubly occupied orbitals = 43 Molecular weight (most abundant/longest-lived isotopes) = 223.163 amu Computer time = 0.30 seconds Orbital eigenvalues (eV) -39.53764 -35.87914 -33.30452 -32.05667 -30.65662 -28.72036 -27.36579 -23.64838 -22.80235 -21.42670 -21.21061 -19.63013 -19.09582 -17.00555 -15.08443 -14.88771 -14.53302 -14.19433 -13.83201 -13.62626 -13.34300 -13.04104 -12.71709 -12.31431 -11.77611 -11.73886 -11.21720 -11.11417 -10.95098 -10.80606 -10.80120 -10.52805 -10.46570 -10.31199 -10.08719 -10.00625 -9.76302 -9.45286 -9.23644 -8.79855 -6.87772 -5.70903 -2.98654 3.46631 3.51656 3.53352 4.61785 4.75528 4.81810 4.87674 5.20707 5.25802 5.45679 5.48413 5.58105 5.60683 5.63858 5.72840 5.79511 5.90591 5.98762 5.99997 6.07031 6.11694 6.19470 6.19806 6.26280 6.28990 6.40008 6.44838 6.50085 6.63452 6.74967 6.78354 6.89065 7.10441 7.25457 7.75593 8.48519 9.59078 10.19344 10.53930 11.52148 Molecular weight = 223.16amu Principal moments of inertia in cm(-1) A = 0.056143 B = 0.006023 C = 0.005696 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 498.607660 B = 4647.756719 C = 4914.364569 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.935 5.935 2 C -0.016 4.016 3 Si 0.905 3.095 4 H -0.291 1.291 5 H -0.292 1.292 6 H -0.282 1.282 7 C -0.234 4.234 8 H 0.069 0.931 9 N -0.727 5.727 10 C 0.179 3.821 11 H 0.043 0.957 12 C -0.134 4.134 13 C -0.111 4.111 14 C -0.079 4.079 15 H 0.066 0.934 16 C -0.114 4.114 17 C -0.118 4.118 18 C -0.118 4.118 19 C -0.115 4.115 20 C -0.076 4.076 21 H 0.066 0.934 22 C -0.117 4.117 23 H 0.254 0.746 24 H 0.382 0.618 25 H 0.058 0.942 26 H 0.052 0.948 27 H 0.055 0.945 28 H 0.051 0.949 29 H 0.059 0.941 30 H 0.057 0.943 31 H 0.055 0.945 32 H 0.059 0.941 33 H 0.056 0.944 34 H 0.059 0.941 35 H 0.059 0.941 36 H 0.060 0.940 37 H 0.057 0.943 38 H 0.060 0.940 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.327 -16.804 -0.050 17.352 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.584 5.584 2 C -0.212 4.212 3 Si 0.736 3.264 4 H -0.218 1.218 5 H -0.218 1.218 6 H -0.208 1.208 7 C -0.366 4.366 8 H 0.087 0.913 9 N -0.367 5.367 10 C 0.069 3.931 11 H 0.061 0.939 12 C -0.175 4.175 13 C -0.149 4.149 14 C -0.098 4.098 15 H 0.084 0.916 16 C -0.152 4.152 17 C -0.156 4.156 18 C -0.156 4.156 19 C -0.152 4.152 20 C -0.095 4.095 21 H 0.084 0.916 22 C -0.156 4.156 23 H 0.064 0.936 24 H 0.216 0.784 25 H 0.076 0.924 26 H 0.071 0.929 27 H 0.074 0.926 28 H 0.069 0.931 29 H 0.078 0.922 30 H 0.076 0.924 31 H 0.074 0.926 32 H 0.078 0.922 33 H 0.074 0.926 34 H 0.078 0.922 35 H 0.078 0.922 36 H 0.078 0.922 37 H 0.075 0.925 38 H 0.079 0.921 Dipole moment (debyes) X Y Z Total from point charges 4.446 -16.641 -0.021 17.224 hybrid contribution 0.128 0.995 -0.107 1.008 sum 4.574 -15.646 -0.128 16.302 Atomic orbital electron populations 1.69665 1.05094 1.25495 1.58139 1.24723 0.95488 0.97597 1.03346 0.86216 0.78656 0.84042 0.77472 1.21814 1.21836 1.20816 1.19263 0.90965 0.84247 1.42082 0.91290 1.42455 1.05763 0.99884 1.88568 1.20197 0.94236 0.85848 0.92806 0.93882 1.22236 0.99490 0.95054 1.00676 1.21583 0.98400 0.95466 0.99497 1.21153 0.98527 0.93788 0.96300 0.91558 1.21599 0.98464 0.94865 1.00249 1.21528 0.99767 0.97900 0.96399 1.21530 1.00125 0.97275 0.96655 1.21604 0.98501 0.94376 1.00736 1.21110 0.98457 0.94329 0.95583 0.91560 1.21837 0.98784 0.93889 1.01055 0.93617 0.78411 0.92352 0.92899 0.92589 0.93072 0.92221 0.92448 0.92621 0.92227 0.92565 0.92226 0.92178 0.92172 0.92468 0.92142 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -28.80 13.06 55.49 0.72 -28.07 16 2 C -0.02 -0.47 5.50 -17.43 -0.10 -0.56 16 3 Si 0.90 22.78 29.55 -169.99 -5.02 17.76 16 4 H -0.29 -7.28 7.11 56.52 0.40 -6.88 16 5 H -0.29 -7.39 7.11 56.52 0.40 -6.99 16 6 H -0.28 -6.91 7.11 56.52 0.40 -6.51 16 7 C -0.23 -6.65 9.93 -15.06 -0.15 -6.80 16 8 H 0.07 1.91 7.83 -52.49 -0.41 1.50 16 9 N -0.73 -18.73 5.12 -53.42 -0.27 -19.00 16 10 C 0.18 3.67 2.77 -67.92 -0.19 3.48 16 11 H 0.04 0.92 8.08 -51.93 -0.42 0.50 16 12 C -0.13 -2.49 5.50 -26.73 -0.15 -2.64 16 13 C -0.11 -1.63 5.20 -26.73 -0.14 -1.77 16 14 C -0.08 -1.05 1.99 -90.62 -0.18 -1.23 16 15 H 0.07 0.92 8.14 -51.93 -0.42 0.50 16 16 C -0.11 -1.27 5.20 -26.73 -0.14 -1.41 16 17 C -0.12 -1.19 5.92 -26.73 -0.16 -1.35 16 18 C -0.12 -1.22 5.92 -26.73 -0.16 -1.38 16 19 C -0.11 -1.38 5.21 -26.71 -0.14 -1.52 16 20 C -0.08 -1.06 1.99 -90.60 -0.18 -1.24 16 21 H 0.07 0.94 8.14 -51.93 -0.42 0.52 16 22 C -0.12 -2.02 4.68 -26.73 -0.12 -2.15 16 23 H 0.25 7.56 8.31 -40.82 -0.34 7.22 16 24 H 0.38 10.48 7.80 -40.82 -0.32 10.16 16 25 H 0.06 1.18 8.14 -51.93 -0.42 0.76 16 26 H 0.05 1.01 8.14 -51.93 -0.42 0.59 16 27 H 0.06 0.81 8.14 -51.93 -0.42 0.39 16 28 H 0.05 0.69 8.14 -51.93 -0.42 0.27 16 29 H 0.06 0.66 8.14 -51.93 -0.42 0.23 16 30 H 0.06 0.60 8.14 -51.93 -0.42 0.18 16 31 H 0.06 0.49 8.14 -51.93 -0.42 0.07 16 32 H 0.06 0.60 8.14 -51.93 -0.42 0.18 16 33 H 0.06 0.52 8.14 -51.93 -0.42 0.10 16 34 H 0.06 0.61 8.14 -51.93 -0.42 0.19 16 35 H 0.06 0.73 8.14 -51.93 -0.42 0.31 16 36 H 0.06 0.72 8.14 -51.93 -0.42 0.29 16 37 H 0.06 1.00 8.14 -51.93 -0.42 0.58 16 38 H 0.06 1.08 8.14 -51.93 -0.42 0.66 16 LS Contribution 291.16 15.07 4.39 4.39 Total: -1.00 -29.66 291.16 -9.03 -38.70 By element: Atomic # 1 Polarization: 11.85 SS G_CDS: -7.05 Total: 4.80 kcal Atomic # 6 Polarization: -16.76 SS G_CDS: -1.80 Total: -18.56 kcal Atomic # 7 Polarization: -47.52 SS G_CDS: 0.45 Total: -47.07 kcal Atomic # 14 Polarization: 22.78 SS G_CDS: -5.02 Total: 17.76 kcal Total LS contribution 4.39 Total: 4.39 kcal Total: -29.66 -9.03 -38.70 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000306543045.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 3.999 kcal (2) G-P(sol) polarization free energy of solvation -29.662 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -25.663 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.033 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.695 kcal (6) G-S(sol) free energy of system = (1) + (5) -34.696 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.30 seconds