Wall clock time and date at job start Mon Mar 30 2020 03:11:43 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31615 * 1 3 3 Si 1.86800 * 120.00114 * 2 1 4 4 H 1.48499 * 109.47158 * 269.99446 * 3 2 1 5 5 H 1.48496 * 109.47469 * 29.99678 * 3 2 1 6 6 H 1.48501 * 109.47139 * 149.99936 * 3 2 1 7 7 C 1.38809 * 120.00185 * 179.97438 * 2 1 3 8 8 H 1.08002 * 120.00674 * 180.02562 * 7 2 1 9 9 N 1.36939 * 119.99920 * 0.02562 * 7 2 1 10 10 C 1.46505 * 120.00290 * 179.97438 * 9 7 2 11 11 H 1.08992 * 109.46821 * 34.99894 * 10 9 7 12 12 C 1.53006 * 109.46675 * 275.00083 * 10 9 7 13 13 C 1.53005 * 109.46542 * 179.97438 * 12 10 9 14 14 C 1.53002 * 109.46982 * 60.00168 * 13 12 10 15 15 H 1.09000 * 109.47312 * 59.99678 * 14 13 12 16 16 C 1.52997 * 109.47092 * 179.97438 * 14 13 12 17 17 C 1.52999 * 109.47592 * 180.02562 * 16 14 13 18 18 C 1.53006 * 109.46626 * 300.00035 * 17 16 14 19 19 C 1.52997 * 109.47164 * 59.99702 * 18 17 16 20 20 C 1.52996 * 109.46969 * 299.99739 * 14 13 12 21 21 H 1.08996 * 109.47134 * 299.99612 * 20 14 13 22 22 C 1.52995 * 109.47577 * 60.00452 * 20 14 13 23 23 H 0.97006 * 119.99772 * 0.02562 * 1 2 3 24 24 H 0.96998 * 119.99687 * 0.02562 * 9 7 2 25 25 H 1.08998 * 109.46876 * 60.00369 * 12 10 9 26 26 H 1.09000 * 109.47192 * 299.99766 * 12 10 9 27 27 H 1.09000 * 109.47360 * 299.99876 * 13 12 10 28 28 H 1.09002 * 109.46935 * 179.97438 * 13 12 10 29 29 H 1.09000 * 109.47140 * 59.99774 * 16 14 13 30 30 H 1.09002 * 109.47045 * 299.99867 * 16 14 13 31 31 H 1.08993 * 109.47839 * 180.02562 * 17 16 14 32 32 H 1.09000 * 109.47160 * 59.99666 * 17 16 14 33 33 H 1.09001 * 109.46998 * 179.97438 * 18 17 16 34 34 H 1.09000 * 109.47050 * 299.99699 * 18 17 16 35 35 H 1.09000 * 109.47140 * 60.00051 * 19 18 17 36 36 H 1.09001 * 109.47230 * 179.97438 * 19 18 17 37 37 H 1.08999 * 109.47330 * 59.98970 * 22 20 14 38 38 H 1.08992 * 109.47458 * 179.97438 * 22 20 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6177 0.0000 4 1 2.4978 2.0463 -1.4001 5 1 1.4477 2.6527 0.6999 6 1 3.5477 1.4401 0.7001 7 6 2.0102 -1.2021 0.0005 8 1 3.0903 -1.2022 0.0010 9 7 1.3256 -2.3880 0.0005 10 6 2.0580 -3.6568 0.0005 11 1 2.9687 -3.5506 0.5899 12 6 2.4219 -4.0356 -1.4366 13 6 3.1874 -5.3603 -1.4365 14 6 2.3106 -6.4559 -0.8267 15 1 1.3999 -6.5626 -1.4160 16 6 3.0759 -7.7808 -0.8272 17 6 2.1990 -8.8766 -0.2180 18 6 1.8351 -8.4983 1.2192 19 6 1.0698 -7.1735 1.2197 20 6 1.9468 -6.0771 0.6103 21 1 2.8575 -5.9705 1.1996 22 6 1.1813 -4.7524 0.6103 23 1 -0.4850 0.8401 -0.0004 24 1 0.3556 -2.3880 -0.0002 25 1 3.0469 -3.2552 -1.8708 26 1 1.5112 -4.1418 -2.0260 27 1 4.0982 -5.2537 -0.8472 28 1 3.4463 -5.6304 -2.4603 29 1 3.9868 -7.6744 -0.2381 30 1 3.3348 -8.0505 -1.8511 31 1 2.7443 -9.8203 -0.2179 32 1 1.2883 -8.9828 -0.8074 33 1 1.2100 -9.2788 1.6532 34 1 2.7458 -8.3921 1.8087 35 1 0.1591 -7.2797 0.6303 36 1 0.8102 -6.9042 2.2435 37 1 0.2706 -4.8590 0.0209 38 1 0.9217 -4.4828 1.6340 RHF calculation, no. of doubly occupied orbitals= 43 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000306543045.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:11:43 Heat of formation + Delta-G solvation = -50.946588 kcal Electronic energy + Delta-G solvation = -15901.072730 eV Core-core repulsion = 13547.750365 eV Total energy + Delta-G solvation = -2353.322365 eV No. of doubly occupied orbitals = 43 Molecular weight (most abundant/longest-lived isotopes) = 223.163 amu Computer time = 0.32 seconds Orbital eigenvalues (eV) -40.71668 -37.35824 -35.02859 -33.33064 -32.34656 -29.99958 -28.86798 -25.60394 -24.00656 -22.56331 -22.49709 -20.82841 -20.39050 -19.10611 -16.80570 -15.98734 -15.95188 -15.49950 -15.37339 -15.03502 -14.56325 -14.40982 -14.21602 -13.66115 -13.25328 -12.88173 -12.81785 -12.64183 -12.32096 -12.25384 -12.18537 -12.01328 -11.82521 -11.67945 -11.62815 -11.47739 -11.20853 -10.94636 -10.60988 -10.49593 -8.99543 -7.94469 -5.22708 1.45508 1.47579 1.55974 2.55725 3.38355 3.64595 3.78672 3.83833 4.12944 4.18199 4.20362 4.39577 4.50544 4.52935 4.61682 4.62685 4.68577 4.76660 4.82176 4.86646 4.92723 5.00326 5.15981 5.19035 5.21294 5.30178 5.33093 5.38411 5.41736 5.45888 5.51005 5.56002 5.58938 5.66804 5.77396 6.28579 7.33400 8.11304 8.34626 9.29479 Molecular weight = 223.16amu Principal moments of inertia in cm(-1) A = 0.056143 B = 0.006023 C = 0.005696 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 498.607660 B = 4647.756719 C = 4914.364569 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.972 5.972 2 C -0.078 4.078 3 Si 0.972 3.028 4 H -0.287 1.287 5 H -0.294 1.294 6 H -0.270 1.270 7 C -0.238 4.238 8 H 0.072 0.928 9 N -0.740 5.740 10 C 0.173 3.827 11 H 0.035 0.965 12 C -0.126 4.126 13 C -0.103 4.103 14 C -0.076 4.076 15 H 0.061 0.939 16 C -0.110 4.110 17 C -0.117 4.117 18 C -0.115 4.115 19 C -0.113 4.113 20 C -0.070 4.070 21 H 0.066 0.934 22 C -0.108 4.108 23 H 0.251 0.749 24 H 0.370 0.630 25 H 0.035 0.965 26 H 0.042 0.958 27 H 0.061 0.939 28 H 0.068 0.932 29 H 0.063 0.937 30 H 0.068 0.932 31 H 0.073 0.927 32 H 0.059 0.941 33 H 0.070 0.930 34 H 0.062 0.938 35 H 0.058 0.942 36 H 0.058 0.942 37 H 0.050 0.950 38 H 0.048 0.952 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.654 -18.608 -0.119 19.448 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.623 5.623 2 C -0.270 4.270 3 Si 0.801 3.199 4 H -0.214 1.214 5 H -0.221 1.221 6 H -0.194 1.194 7 C -0.370 4.370 8 H 0.090 0.910 9 N -0.380 5.380 10 C 0.065 3.935 11 H 0.053 0.947 12 C -0.166 4.166 13 C -0.141 4.141 14 C -0.095 4.095 15 H 0.080 0.920 16 C -0.147 4.147 17 C -0.154 4.154 18 C -0.153 4.153 19 C -0.150 4.150 20 C -0.089 4.089 21 H 0.085 0.915 22 C -0.146 4.146 23 H 0.059 0.941 24 H 0.202 0.798 25 H 0.054 0.946 26 H 0.061 0.939 27 H 0.079 0.921 28 H 0.087 0.913 29 H 0.082 0.918 30 H 0.087 0.913 31 H 0.092 0.908 32 H 0.078 0.922 33 H 0.089 0.911 34 H 0.081 0.919 35 H 0.077 0.923 36 H 0.077 0.923 37 H 0.069 0.931 38 H 0.067 0.933 Dipole moment (debyes) X Y Z Total from point charges 5.812 -18.488 -0.092 19.380 hybrid contribution -0.282 1.525 -0.083 1.553 sum 5.530 -16.963 -0.175 17.842 Atomic orbital electron populations 1.69826 1.06645 1.25972 1.59893 1.25552 0.96379 1.01051 1.03997 0.85152 0.77722 0.79565 0.77436 1.21432 1.22100 1.19448 1.19628 0.91311 0.85427 1.40659 0.90965 1.42688 1.05373 1.01180 1.88729 1.20446 0.93992 0.84895 0.94183 0.94739 1.22060 0.99151 0.96856 0.98530 1.21526 0.98157 0.93486 1.00967 1.21122 0.98405 0.94682 0.95245 0.92038 1.21558 0.98364 0.93514 1.01261 1.21531 0.99807 0.98223 0.95870 1.21518 1.00221 0.96303 0.97223 1.21575 0.98293 0.94758 1.00391 1.21063 0.98272 0.92937 0.96590 0.91532 1.21731 0.98380 0.94785 0.99749 0.94070 0.79829 0.94581 0.93943 0.92057 0.91306 0.91804 0.91319 0.90797 0.92200 0.91133 0.91879 0.92342 0.92282 0.93082 0.93316 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.97 -61.25 13.06 21.65 0.28 -60.97 16 2 C -0.08 -4.61 5.50 84.86 0.47 -4.14 16 3 Si 0.97 47.32 29.55 68.60 2.03 49.35 16 4 H -0.29 -13.72 7.11 99.48 0.71 -13.01 16 5 H -0.29 -14.35 7.11 99.48 0.71 -13.64 16 6 H -0.27 -12.41 7.11 99.48 0.71 -11.70 16 7 C -0.24 -13.76 9.93 84.03 0.83 -12.92 16 8 H 0.07 4.03 7.83 -2.91 -0.02 4.01 16 9 N -0.74 -39.26 5.12 -322.92 -1.65 -40.91 16 10 C 0.17 7.20 2.77 44.99 0.12 7.32 16 11 H 0.03 1.49 8.08 -2.39 -0.02 1.47 16 12 C -0.13 -4.69 5.50 30.60 0.17 -4.52 16 13 C -0.10 -2.86 5.20 30.60 0.16 -2.70 16 14 C -0.08 -1.86 1.99 -10.80 -0.02 -1.88 16 15 H 0.06 1.59 8.14 -2.39 -0.02 1.57 16 16 C -0.11 -2.06 5.20 30.59 0.16 -1.90 16 17 C -0.12 -1.93 5.92 30.60 0.18 -1.75 16 18 C -0.12 -2.02 5.92 30.60 0.18 -1.84 16 19 C -0.11 -2.50 5.21 30.61 0.16 -2.34 16 20 C -0.07 -1.84 1.99 -10.78 -0.02 -1.87 16 21 H 0.07 1.78 8.14 -2.39 -0.02 1.76 16 22 C -0.11 -3.75 4.68 30.59 0.14 -3.61 16 23 H 0.25 15.25 8.31 -92.70 -0.77 14.48 16 24 H 0.37 21.07 7.80 -92.71 -0.72 20.34 16 25 H 0.04 1.47 8.14 -2.39 -0.02 1.45 16 26 H 0.04 1.64 8.14 -2.39 -0.02 1.63 16 27 H 0.06 1.65 8.14 -2.39 -0.02 1.63 16 28 H 0.07 1.69 8.14 -2.39 -0.02 1.67 16 29 H 0.06 1.17 8.14 -2.39 -0.02 1.15 16 30 H 0.07 1.17 8.14 -2.39 -0.02 1.15 16 31 H 0.07 1.00 8.14 -2.39 -0.02 0.98 16 32 H 0.06 1.01 8.14 -2.39 -0.02 0.99 16 33 H 0.07 1.07 8.14 -2.39 -0.02 1.05 16 34 H 0.06 1.08 8.14 -2.39 -0.02 1.06 16 35 H 0.06 1.32 8.14 -2.39 -0.02 1.30 16 36 H 0.06 1.32 8.14 -2.39 -0.02 1.30 16 37 H 0.05 1.82 8.14 -2.39 -0.02 1.80 16 38 H 0.05 1.78 8.14 -2.39 -0.02 1.76 16 Total: -1.00 -63.95 291.16 3.46 -60.48 By element: Atomic # 1 Polarization: 23.91 SS G_CDS: 0.27 Total: 24.19 kcal Atomic # 6 Polarization: -34.68 SS G_CDS: 2.53 Total: -32.14 kcal Atomic # 7 Polarization: -100.51 SS G_CDS: -1.37 Total: -101.88 kcal Atomic # 14 Polarization: 47.32 SS G_CDS: 2.03 Total: 49.35 kcal Total: -63.95 3.46 -60.48 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000306543045.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 9.538 kcal (2) G-P(sol) polarization free energy of solvation -63.949 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -54.411 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.464 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -60.484 kcal (6) G-S(sol) free energy of system = (1) + (5) -50.947 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.32 seconds