Wall clock time and date at job start Mon Mar 30 2020 02:32:56 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 C 1.53002 * 109.46886 * 2 1 4 4 C 1.52999 * 109.46997 * 120.00398 * 2 1 3 5 5 H 1.08996 * 109.46929 * 299.99280 * 4 2 1 6 6 C 1.52997 * 109.47317 * 60.00177 * 4 2 1 7 7 N 1.46506 * 109.46684 * 180.02562 * 4 2 1 8 8 N 1.39848 * 125.69780 * 300.01823 * 7 4 2 9 9 C 1.30263 * 109.53667 * 180.02562 * 8 7 4 10 10 C 1.41802 * 108.25708 * 0.02562 * 9 8 7 11 11 C 1.41186 * 126.63506 * 179.97438 * 10 9 8 12 12 H 1.08004 * 120.00316 * 179.97438 * 11 10 9 13 13 C 1.39555 * 120.00016 * 359.97438 * 11 10 9 14 14 N 1.31191 * 120.00375 * 359.97438 * 13 11 10 15 15 Si 1.86805 * 120.00015 * 179.97438 * 13 11 10 16 16 H 1.48500 * 109.47035 * 90.00167 * 15 13 11 17 17 H 1.48501 * 109.47085 * 210.00051 * 15 13 11 18 18 H 1.48498 * 109.47009 * 330.00102 * 15 13 11 19 19 C 1.35152 * 125.70246 * 119.71692 * 7 4 2 20 20 N 1.37734 * 126.55831 * 359.97400 * 19 7 4 21 21 H 1.09001 * 109.47377 * 59.99963 * 1 2 3 22 22 H 1.09000 * 109.46866 * 179.97438 * 1 2 3 23 23 H 1.08996 * 109.47261 * 299.99422 * 1 2 3 24 24 H 1.09001 * 109.46611 * 240.00303 * 2 1 3 25 25 H 1.09002 * 109.46838 * 179.97438 * 3 2 1 26 26 H 1.09001 * 109.47142 * 300.00180 * 3 2 1 27 27 H 1.08996 * 109.46698 * 60.00234 * 3 2 1 28 28 H 1.09002 * 109.47153 * 299.99641 * 6 4 2 29 29 H 1.09001 * 109.46832 * 179.97438 * 6 4 2 30 30 H 1.09004 * 109.47261 * 59.99813 * 6 4 2 31 31 H 1.08002 * 125.86881 * 179.97438 * 9 8 7 32 32 H 0.96998 * 120.00328 * 179.97438 * 14 13 11 33 33 H 0.96996 * 120.00338 * 0.02562 * 20 19 7 34 34 H 0.97002 * 119.99698 * 179.97438 * 20 19 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0400 -0.7213 1.2492 5 1 1.6768 -0.2075 2.1391 6 6 1.5301 -2.1638 1.2491 7 7 3.5051 -0.7208 1.2494 8 7 4.3215 -1.2878 0.2657 9 6 5.5725 -1.1066 0.5803 10 6 5.6239 -0.3996 1.8084 11 6 6.7866 -0.0004 2.5027 12 1 6.7009 0.5372 3.4355 13 6 8.0469 -0.3005 1.9837 14 7 8.1512 -0.9539 0.8509 15 14 9.5853 0.2283 2.9020 16 1 9.9923 -0.8444 3.8448 17 1 10.6811 0.4756 1.9307 18 1 9.3055 1.4739 3.6604 19 6 4.2934 -0.1672 2.1974 20 7 3.8733 0.4943 3.3301 21 1 -0.3634 0.5138 -0.8900 22 1 -0.3633 -1.0277 -0.0005 23 1 -0.3633 0.5137 0.8900 24 1 1.8933 -0.5138 -0.8900 25 1 3.1300 1.4425 0.0005 26 1 1.6766 1.9564 -0.8900 27 1 1.6767 1.9563 0.8900 28 1 0.4401 -2.1639 1.2491 29 1 1.8938 -2.6778 2.1389 30 1 1.8934 -2.6776 0.3591 31 1 6.4242 -1.4387 0.0050 32 1 9.0271 -1.1621 0.4899 33 1 2.9254 0.5978 3.5079 34 1 4.5255 0.8561 3.9504 RHF calculation, no. of doubly occupied orbitals= 42 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000307353790.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:32:56 Heat of formation + Delta-G solvation = 59.957684 kcal Electronic energy + Delta-G solvation = -15721.320136 eV Core-core repulsion = 13269.266598 eV Total energy + Delta-G solvation = -2452.053538 eV No. of doubly occupied orbitals = 42 Molecular weight (most abundant/longest-lived isotopes) = 223.138 amu Computer time = 0.28 seconds Orbital eigenvalues (eV) -39.45569 -36.46275 -33.20765 -33.11504 -30.99877 -28.65170 -27.57632 -26.56315 -24.25545 -22.95687 -20.56290 -19.25680 -18.40292 -16.91139 -16.09417 -15.11925 -14.67920 -14.49981 -14.10799 -13.64950 -13.04430 -12.72324 -12.46651 -12.16028 -11.98598 -11.82140 -11.31058 -11.12402 -11.02851 -10.89012 -10.59282 -10.51170 -10.45758 -10.24110 -9.80288 -9.58147 -9.02264 -8.54990 -7.25060 -6.42953 -6.16438 -3.59250 3.20114 3.31341 3.34052 3.68409 3.80519 4.31963 4.61621 4.88863 5.04402 5.17921 5.31711 5.47724 5.64477 5.73660 5.81044 5.84421 5.95716 6.03280 6.09486 6.14426 6.32437 6.53158 6.61726 6.67763 6.97364 7.19999 7.41760 7.84007 8.02052 8.33784 8.75852 8.85599 8.99686 9.34608 9.43235 9.78758 10.85210 Molecular weight = 223.14amu Principal moments of inertia in cm(-1) A = 0.047840 B = 0.007435 C = 0.007212 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 585.140769 B = 3765.307957 C = 3881.652351 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.146 4.146 2 C -0.102 4.102 3 C -0.141 4.141 4 C 0.183 3.817 5 H 0.073 0.927 6 C -0.158 4.158 7 N -0.399 5.399 8 N -0.358 5.358 9 C 0.052 3.948 10 C -0.085 4.085 11 C -0.424 4.424 12 H 0.058 0.942 13 C 0.058 3.942 14 N -0.857 5.857 15 Si 0.908 3.092 16 H -0.279 1.279 17 H -0.284 1.284 18 H -0.272 1.272 19 C 0.210 3.790 20 N -0.862 5.862 21 H 0.054 0.946 22 H 0.057 0.943 23 H 0.051 0.949 24 H 0.081 0.919 25 H 0.064 0.936 26 H 0.047 0.953 27 H 0.045 0.955 28 H 0.060 0.940 29 H 0.053 0.947 30 H 0.068 0.932 31 H 0.201 0.799 32 H 0.267 0.733 33 H 0.375 0.625 34 H 0.404 0.596 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.093 2.000 1.136 11.329 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.203 4.203 2 C -0.122 4.122 3 C -0.198 4.198 4 C 0.078 3.922 5 H 0.091 0.909 6 C -0.216 4.216 7 N -0.190 5.190 8 N -0.183 5.183 9 C -0.132 4.132 10 C -0.099 4.099 11 C -0.461 4.461 12 H 0.076 0.924 13 C -0.148 4.148 14 N -0.492 5.492 15 Si 0.735 3.265 16 H -0.205 1.205 17 H -0.210 1.210 18 H -0.197 1.197 19 C -0.010 4.010 20 N -0.413 5.413 21 H 0.073 0.927 22 H 0.076 0.924 23 H 0.070 0.930 24 H 0.100 0.900 25 H 0.083 0.917 26 H 0.066 0.934 27 H 0.064 0.936 28 H 0.079 0.921 29 H 0.072 0.928 30 H 0.087 0.913 31 H 0.217 0.783 32 H 0.078 0.922 33 H 0.200 0.800 34 H 0.233 0.767 Dipole moment (debyes) X Y Z Total from point charges -11.743 1.380 0.065 11.824 hybrid contribution 1.198 0.837 1.477 2.078 sum -10.545 2.217 1.542 10.885 Atomic orbital electron populations 1.21898 0.95329 1.01652 1.01470 1.21431 0.94721 0.96843 0.99171 1.21736 1.02514 0.95169 1.00373 1.20674 0.78045 0.96038 0.97427 0.90912 1.22151 0.99917 0.96406 1.03123 1.47603 1.03124 1.49504 1.18811 1.76637 1.03168 1.25767 1.12708 1.24799 0.93006 0.98372 0.97025 1.17427 0.88542 1.06722 0.97258 1.18331 0.89341 1.32511 1.05875 0.92391 1.25411 0.99568 0.94932 0.94905 1.69497 1.24306 1.36901 1.18497 0.86330 0.81644 0.79067 0.79439 1.20494 1.20976 1.19693 1.18149 0.90552 1.03781 0.88497 1.40610 1.07717 1.67855 1.25136 0.92728 0.92381 0.92998 0.90030 0.91671 0.93356 0.93587 0.92070 0.92766 0.91341 0.78344 0.92225 0.79958 0.76670 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.68 8.84 37.16 0.33 -1.35 16 2 C -0.10 -1.56 2.62 -90.62 -0.24 -1.80 16 3 C -0.14 -2.24 9.04 37.16 0.34 -1.90 16 4 C 0.18 3.09 2.65 -67.93 -0.18 2.91 16 5 H 0.07 1.12 6.78 -51.93 -0.35 0.77 16 6 C -0.16 -2.43 9.09 37.16 0.34 -2.09 16 7 N -0.40 -8.78 2.51 -53.20 -0.13 -8.92 16 8 N -0.36 -9.01 12.28 30.94 0.38 -8.63 16 9 C 0.05 1.43 10.90 -16.86 -0.18 1.25 16 10 C -0.09 -2.34 5.96 -106.54 -0.63 -2.98 16 11 C -0.42 -11.75 9.24 -37.97 -0.35 -12.10 16 12 H 0.06 1.53 7.36 -52.48 -0.39 1.14 16 13 C 0.06 1.58 5.49 -17.33 -0.10 1.48 16 14 N -0.86 -23.65 10.32 55.53 0.57 -23.08 16 15 Si 0.91 20.49 29.56 -169.99 -5.02 15.47 16 16 H -0.28 -6.25 7.11 56.52 0.40 -5.85 16 17 H -0.28 -6.35 7.11 56.52 0.40 -5.95 16 18 H -0.27 -6.05 7.11 56.52 0.40 -5.64 16 19 C 0.21 4.96 8.06 -153.29 -1.24 3.73 16 20 N -0.86 -16.34 9.03 31.65 0.29 -16.05 16 21 H 0.05 0.58 8.14 -51.93 -0.42 0.16 16 22 H 0.06 0.62 6.43 -51.93 -0.33 0.28 16 23 H 0.05 0.54 8.14 -51.93 -0.42 0.12 16 24 H 0.08 1.41 8.14 -51.93 -0.42 0.99 16 25 H 0.06 1.30 7.60 -51.93 -0.39 0.90 16 26 H 0.05 0.68 8.14 -51.93 -0.42 0.26 16 27 H 0.05 0.67 8.14 -51.93 -0.42 0.25 16 28 H 0.06 0.74 6.43 -51.93 -0.33 0.40 16 29 H 0.05 0.88 8.14 -51.93 -0.42 0.46 16 30 H 0.07 1.15 8.14 -51.93 -0.42 0.73 16 31 H 0.20 5.66 5.76 -52.49 -0.30 5.36 16 32 H 0.27 6.88 8.30 -40.82 -0.34 6.54 16 33 H 0.37 5.88 7.62 -40.82 -0.31 5.57 16 34 H 0.40 7.38 8.31 -40.82 -0.34 7.04 16 LS Contribution 278.48 15.07 4.20 4.20 Total: -1.00 -29.88 278.48 -6.48 -36.36 By element: Atomic # 1 Polarization: 18.36 SS G_CDS: -4.85 Total: 13.51 kcal Atomic # 6 Polarization: -10.94 SS G_CDS: -1.91 Total: -12.86 kcal Atomic # 7 Polarization: -57.79 SS G_CDS: 1.11 Total: -56.68 kcal Atomic # 14 Polarization: 20.49 SS G_CDS: -5.02 Total: 15.47 kcal Total LS contribution 4.20 Total: 4.20 kcal Total: -29.88 -6.48 -36.36 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000307353790.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 96.317 kcal (2) G-P(sol) polarization free energy of solvation -29.875 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 66.442 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.484 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.360 kcal (6) G-S(sol) free energy of system = (1) + (5) 59.958 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.28 seconds