Wall clock time and date at job start Mon Mar 30 2020 02:32:55 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 C 1.53002 * 109.46886 * 2 1 4 4 C 1.52999 * 109.46997 * 120.00398 * 2 1 3 5 5 H 1.08996 * 109.46929 * 299.99280 * 4 2 1 6 6 C 1.52997 * 109.47317 * 60.00177 * 4 2 1 7 7 N 1.46506 * 109.46684 * 180.02562 * 4 2 1 8 8 N 1.39848 * 125.69780 * 300.01823 * 7 4 2 9 9 C 1.30263 * 109.53667 * 180.02562 * 8 7 4 10 10 C 1.41802 * 108.25708 * 0.02562 * 9 8 7 11 11 C 1.41186 * 126.63506 * 179.97438 * 10 9 8 12 12 H 1.08004 * 120.00316 * 179.97438 * 11 10 9 13 13 C 1.39555 * 120.00016 * 359.97438 * 11 10 9 14 14 N 1.31191 * 120.00375 * 359.97438 * 13 11 10 15 15 Si 1.86805 * 120.00015 * 179.97438 * 13 11 10 16 16 H 1.48500 * 109.47035 * 90.00167 * 15 13 11 17 17 H 1.48501 * 109.47085 * 210.00051 * 15 13 11 18 18 H 1.48498 * 109.47009 * 330.00102 * 15 13 11 19 19 C 1.35152 * 125.70246 * 119.71692 * 7 4 2 20 20 N 1.37734 * 126.55831 * 359.97400 * 19 7 4 21 21 H 1.09001 * 109.47377 * 59.99963 * 1 2 3 22 22 H 1.09000 * 109.46866 * 179.97438 * 1 2 3 23 23 H 1.08996 * 109.47261 * 299.99422 * 1 2 3 24 24 H 1.09001 * 109.46611 * 240.00303 * 2 1 3 25 25 H 1.09002 * 109.46838 * 179.97438 * 3 2 1 26 26 H 1.09001 * 109.47142 * 300.00180 * 3 2 1 27 27 H 1.08996 * 109.46698 * 60.00234 * 3 2 1 28 28 H 1.09002 * 109.47153 * 299.99641 * 6 4 2 29 29 H 1.09001 * 109.46832 * 179.97438 * 6 4 2 30 30 H 1.09004 * 109.47261 * 59.99813 * 6 4 2 31 31 H 1.08002 * 125.86881 * 179.97438 * 9 8 7 32 32 H 0.96998 * 120.00328 * 179.97438 * 14 13 11 33 33 H 0.96996 * 120.00338 * 0.02562 * 20 19 7 34 34 H 0.97002 * 119.99698 * 179.97438 * 20 19 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0400 -0.7213 1.2492 5 1 1.6768 -0.2075 2.1391 6 6 1.5301 -2.1638 1.2491 7 7 3.5051 -0.7208 1.2494 8 7 4.3215 -1.2878 0.2657 9 6 5.5725 -1.1066 0.5803 10 6 5.6239 -0.3996 1.8084 11 6 6.7866 -0.0004 2.5027 12 1 6.7009 0.5372 3.4355 13 6 8.0469 -0.3005 1.9837 14 7 8.1512 -0.9539 0.8509 15 14 9.5853 0.2283 2.9020 16 1 9.9923 -0.8444 3.8448 17 1 10.6811 0.4756 1.9307 18 1 9.3055 1.4739 3.6604 19 6 4.2934 -0.1672 2.1974 20 7 3.8733 0.4943 3.3301 21 1 -0.3634 0.5138 -0.8900 22 1 -0.3633 -1.0277 -0.0005 23 1 -0.3633 0.5137 0.8900 24 1 1.8933 -0.5138 -0.8900 25 1 3.1300 1.4425 0.0005 26 1 1.6766 1.9564 -0.8900 27 1 1.6767 1.9563 0.8900 28 1 0.4401 -2.1639 1.2491 29 1 1.8938 -2.6778 2.1389 30 1 1.8934 -2.6776 0.3591 31 1 6.4242 -1.4387 0.0050 32 1 9.0271 -1.1621 0.4899 33 1 2.9254 0.5978 3.5079 34 1 4.5255 0.8561 3.9504 RHF calculation, no. of doubly occupied orbitals= 42 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000307353790.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:32:55 Heat of formation + Delta-G solvation = 41.250704 kcal Electronic energy + Delta-G solvation = -15722.131332 eV Core-core repulsion = 13269.266598 eV Total energy + Delta-G solvation = -2452.864734 eV No. of doubly occupied orbitals = 42 Molecular weight (most abundant/longest-lived isotopes) = 223.138 amu Computer time = 0.29 seconds Orbital eigenvalues (eV) -41.27189 -37.86306 -35.05165 -34.97276 -32.47707 -30.27955 -29.43180 -27.75525 -26.13145 -24.44384 -22.16669 -21.06674 -20.05298 -18.71485 -17.86524 -16.94879 -16.24441 -16.04605 -15.43483 -15.28686 -14.58774 -14.47549 -13.94021 -13.52793 -13.22391 -13.12296 -12.94694 -12.81301 -12.61535 -12.52996 -12.32780 -11.97503 -11.74207 -11.66735 -11.51823 -11.35944 -10.97145 -10.50985 -9.11531 -8.33360 -8.13801 -5.62805 1.42124 1.47084 1.58738 1.79462 2.12624 2.44051 2.57724 3.42179 3.66176 3.73476 3.95356 4.06585 4.27669 4.42038 4.56936 4.74690 4.77265 4.81000 4.95805 5.01045 5.08885 5.15244 5.25849 5.29562 5.38952 5.48195 5.52026 5.90362 6.21842 6.33479 6.78053 7.11887 7.12848 7.37287 7.51317 7.86008 8.88698 Molecular weight = 223.14amu Principal moments of inertia in cm(-1) A = 0.047840 B = 0.007435 C = 0.007212 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 585.140769 B = 3765.307957 C = 3881.652351 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.137 4.137 2 C -0.097 4.097 3 C -0.136 4.136 4 C 0.165 3.835 5 H 0.099 0.901 6 C -0.151 4.151 7 N -0.386 5.386 8 N -0.371 5.371 9 C 0.020 3.980 10 C -0.140 4.140 11 C -0.450 4.450 12 H 0.063 0.937 13 C 0.005 3.995 14 N -0.889 5.889 15 Si 0.980 3.020 16 H -0.275 1.275 17 H -0.282 1.282 18 H -0.264 1.264 19 C 0.236 3.764 20 N -0.843 5.843 21 H 0.066 0.934 22 H 0.070 0.930 23 H 0.071 0.929 24 H 0.055 0.945 25 H 0.016 0.984 26 H 0.065 0.935 27 H 0.063 0.937 28 H 0.104 0.896 29 H 0.043 0.957 30 H 0.047 0.953 31 H 0.179 0.821 32 H 0.268 0.732 33 H 0.396 0.604 34 H 0.410 0.590 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.487 2.933 2.576 14.041 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.195 4.195 2 C -0.117 4.117 3 C -0.194 4.194 4 C 0.063 3.937 5 H 0.117 0.883 6 C -0.209 4.209 7 N -0.177 5.177 8 N -0.198 5.198 9 C -0.162 4.162 10 C -0.154 4.154 11 C -0.486 4.486 12 H 0.081 0.919 13 C -0.198 4.198 14 N -0.525 5.525 15 Si 0.804 3.196 16 H -0.201 1.201 17 H -0.207 1.207 18 H -0.188 1.188 19 C 0.011 3.989 20 N -0.396 5.396 21 H 0.085 0.915 22 H 0.089 0.911 23 H 0.090 0.910 24 H 0.073 0.927 25 H 0.035 0.965 26 H 0.084 0.916 27 H 0.082 0.918 28 H 0.123 0.877 29 H 0.062 0.938 30 H 0.066 0.934 31 H 0.195 0.805 32 H 0.078 0.922 33 H 0.225 0.775 34 H 0.240 0.760 Dipole moment (debyes) X Y Z Total from point charges -14.185 2.316 1.511 14.452 hybrid contribution 1.710 0.576 1.042 2.083 sum -12.475 2.892 2.553 13.057 Atomic orbital electron populations 1.21842 0.91483 1.03052 1.03089 1.21380 0.97723 0.95623 0.96963 1.21697 0.99281 0.96209 1.02189 1.21295 0.74844 0.97946 0.99578 0.88281 1.22112 1.02573 0.94593 1.01620 1.48008 1.05011 1.47405 1.17245 1.76531 1.02690 1.26699 1.13838 1.24522 0.93422 1.00350 0.97874 1.17779 0.90375 1.09062 0.98203 1.18632 0.90292 1.33339 1.06374 0.91855 1.26277 1.02592 0.95093 0.95799 1.69657 1.24856 1.38066 1.19902 0.85220 0.77513 0.78799 0.78043 1.20052 1.20741 1.18802 1.18294 0.90054 1.01598 0.88989 1.40552 1.09271 1.66322 1.23413 0.91520 0.91107 0.91048 0.92692 0.96494 0.91626 0.91766 0.87707 0.93755 0.93387 0.80460 0.92200 0.77500 0.75957 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.54 8.84 71.98 0.64 -1.91 16 2 C -0.10 -2.76 2.62 -10.79 -0.03 -2.78 16 3 C -0.14 -4.09 9.04 71.98 0.65 -3.44 16 4 C 0.17 5.20 2.65 44.99 0.12 5.32 16 5 H 0.10 2.62 6.78 -2.39 -0.02 2.60 16 6 C -0.15 -4.26 9.09 71.98 0.65 -3.61 16 7 N -0.39 -16.83 2.51 -322.23 -0.81 -17.64 16 8 N -0.37 -19.30 12.28 -56.02 -0.69 -19.98 16 9 C 0.02 1.17 10.90 85.81 0.94 2.10 16 10 C -0.14 -7.88 5.96 -21.11 -0.13 -8.00 16 11 C -0.45 -25.51 9.24 23.31 0.22 -25.30 16 12 H 0.06 3.36 7.36 -2.91 -0.02 3.34 16 13 C 0.01 0.29 5.49 85.11 0.47 0.76 16 14 N -0.89 -51.34 10.32 21.77 0.22 -51.12 16 15 Si 0.98 42.87 29.56 68.60 2.03 44.90 16 16 H -0.27 -11.72 7.11 99.48 0.71 -11.02 16 17 H -0.28 -12.08 7.11 99.48 0.71 -11.38 16 18 H -0.26 -11.03 7.11 99.48 0.71 -10.33 16 19 C 0.24 11.01 8.06 133.00 1.07 12.08 16 20 N -0.84 -30.08 9.03 -53.77 -0.49 -30.56 16 21 H 0.07 1.12 8.14 -2.39 -0.02 1.10 16 22 H 0.07 1.16 6.43 -2.39 -0.02 1.14 16 23 H 0.07 1.09 8.14 -2.39 -0.02 1.07 16 24 H 0.05 1.86 8.14 -2.39 -0.02 1.84 16 25 H 0.02 0.64 7.60 -2.39 -0.02 0.62 16 26 H 0.06 1.71 8.14 -2.39 -0.02 1.69 16 27 H 0.06 1.66 8.14 -2.39 -0.02 1.64 16 28 H 0.10 2.05 6.43 -2.39 -0.02 2.03 16 29 H 0.04 1.33 8.14 -2.39 -0.02 1.31 16 30 H 0.05 1.56 8.14 -2.38 -0.02 1.54 16 31 H 0.18 10.89 5.76 -2.91 -0.02 10.87 16 32 H 0.27 14.43 8.30 -92.71 -0.77 13.66 16 33 H 0.40 10.96 7.62 -92.71 -0.71 10.25 16 34 H 0.41 14.14 8.31 -92.71 -0.77 13.37 16 Total: -1.00 -68.30 278.48 4.50 -63.80 By element: Atomic # 1 Polarization: 35.74 SS G_CDS: -0.37 Total: 35.38 kcal Atomic # 6 Polarization: -29.37 SS G_CDS: 4.60 Total: -24.78 kcal Atomic # 7 Polarization: -117.54 SS G_CDS: -1.76 Total: -119.30 kcal Atomic # 14 Polarization: 42.87 SS G_CDS: 2.03 Total: 44.90 kcal Total: -68.30 4.50 -63.80 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000307353790.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 105.052 kcal (2) G-P(sol) polarization free energy of solvation -68.303 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 36.748 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.502 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.801 kcal (6) G-S(sol) free energy of system = (1) + (5) 41.251 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.30 seconds