Wall clock time and date at job start Mon Mar 30 2020 02:32:58 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.53003 * 109.47007 * 2 1 4 4 C 1.53003 * 109.46792 * 119.99303 * 2 1 3 5 5 H 1.08995 * 109.47083 * 300.00157 * 4 2 1 6 6 C 1.53002 * 109.46792 * 180.02562 * 4 2 1 7 7 N 1.46496 * 109.46819 * 60.00244 * 4 2 1 8 8 N 1.39847 * 125.70538 * 59.97536 * 7 4 2 9 9 C 1.30259 * 109.54624 * 179.72874 * 8 7 4 10 10 C 1.41813 * 108.25122 * 0.44956 * 9 8 7 11 11 C 1.41193 * 126.63356 * 179.81641 * 10 9 8 12 12 H 1.07997 * 119.99560 * 179.41265 * 11 10 9 13 13 C 1.39555 * 120.00012 * 359.68933 * 11 10 9 14 14 N 1.31197 * 119.99676 * 359.72174 * 13 11 10 15 15 Si 1.86798 * 119.99657 * 179.72730 * 13 11 10 16 16 H 1.48490 * 109.47339 * 359.97438 * 15 13 11 17 17 H 1.48493 * 109.47239 * 120.00070 * 15 13 11 18 18 H 1.48504 * 109.46636 * 239.99629 * 15 13 11 19 19 C 1.35151 * 125.70037 * 239.99284 * 7 4 2 20 20 N 1.37731 * 126.56293 * 359.96515 * 19 7 4 21 21 H 1.09002 * 109.47625 * 300.00410 * 1 2 3 22 22 H 1.09003 * 109.47267 * 60.00296 * 1 2 3 23 23 H 1.09004 * 109.47286 * 180.02562 * 1 2 3 24 24 H 1.08995 * 109.46981 * 239.99528 * 2 1 3 25 25 H 1.09008 * 109.46522 * 299.99304 * 3 2 1 26 26 H 1.08995 * 109.47639 * 59.99371 * 3 2 1 27 27 H 1.08994 * 109.46739 * 180.02562 * 3 2 1 28 28 H 1.09000 * 109.46541 * 180.02562 * 6 4 2 29 29 H 1.08995 * 109.46981 * 300.00224 * 6 4 2 30 30 H 1.09000 * 109.47048 * 60.00706 * 6 4 2 31 31 H 1.08000 * 125.88061 * 180.29136 * 9 8 7 32 32 H 0.97001 * 119.99301 * 179.97438 * 14 13 11 33 33 H 0.97002 * 119.99950 * 179.97438 * 20 19 7 34 34 H 0.97002 * 120.00099 * 359.97438 * 20 19 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0399 -0.7211 1.2494 5 1 1.6766 -0.2072 2.1392 6 6 3.5700 -0.7206 1.2497 7 7 1.5516 -2.1023 1.2494 8 7 1.8145 -3.0610 0.2658 9 6 1.2314 -4.1818 0.5828 10 6 0.5412 -3.9927 1.8071 11 6 -0.2240 -4.9557 2.5003 12 1 -0.6991 -4.6969 3.4350 13 6 -0.3616 -6.2436 1.9806 14 7 0.2157 -6.5578 0.8451 15 14 -1.3677 -7.5198 2.9017 16 1 -1.9097 -6.9186 4.1465 17 1 -2.4895 -7.9789 2.0439 18 1 -0.5029 -8.6767 3.2469 19 6 0.7713 -2.6629 2.2000 20 7 0.2934 -2.0488 3.3364 21 1 -0.3634 0.5139 0.8899 22 1 -0.3634 0.5138 -0.8900 23 1 -0.3634 -1.0277 0.0005 24 1 1.8933 -0.5139 -0.8899 25 1 1.6767 1.9563 -0.8901 26 1 1.6766 1.9564 0.8899 27 1 3.1299 1.4425 -0.0005 28 1 3.9332 -1.2347 2.1396 29 1 3.9336 -1.2342 0.3598 30 1 3.9329 0.3072 1.2499 31 1 1.2654 -5.0970 0.0103 32 1 0.1203 -7.4530 0.4841 33 1 -0.2628 -2.5441 3.9579 34 1 0.5130 -1.1211 3.5153 RHF calculation, no. of doubly occupied orbitals= 42 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000307353792.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:32:58 Heat of formation + Delta-G solvation = 59.935576 kcal Electronic energy + Delta-G solvation = -15720.918640 eV Core-core repulsion = 13268.864143 eV Total energy + Delta-G solvation = -2452.054497 eV No. of doubly occupied orbitals = 42 Molecular weight (most abundant/longest-lived isotopes) = 223.138 amu Computer time = 0.27 seconds Orbital eigenvalues (eV) -39.45654 -36.46391 -33.20909 -33.11499 -30.99944 -28.65169 -27.57715 -26.56352 -24.25704 -22.95776 -20.56412 -19.25759 -18.40391 -16.91305 -16.09615 -15.12208 -14.67686 -14.49682 -14.10614 -13.65675 -13.04433 -12.72397 -12.46959 -12.16260 -11.98676 -11.82168 -11.30805 -11.12569 -11.04449 -10.88357 -10.58223 -10.51132 -10.45666 -10.24328 -9.79127 -9.58306 -9.02982 -8.54746 -7.25133 -6.42976 -6.16651 -3.59371 3.18952 3.31683 3.35069 3.68358 3.80339 4.31982 4.61520 4.88798 5.04295 5.17885 5.31717 5.47690 5.64429 5.73522 5.80966 5.84396 5.95672 6.03265 6.09437 6.14399 6.32389 6.53108 6.61712 6.67758 6.97228 7.19869 7.41979 7.83944 8.01944 8.33814 8.75838 8.85694 8.99567 9.34463 9.43244 9.78664 10.85073 Molecular weight = 223.14amu Principal moments of inertia in cm(-1) A = 0.047817 B = 0.007434 C = 0.007213 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 585.430245 B = 3765.766796 C = 3881.173458 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.141 4.141 2 C -0.102 4.102 3 C -0.146 4.146 4 C 0.182 3.818 5 H 0.073 0.927 6 C -0.158 4.158 7 N -0.399 5.399 8 N -0.358 5.358 9 C 0.052 3.948 10 C -0.086 4.086 11 C -0.424 4.424 12 H 0.058 0.942 13 C 0.058 3.942 14 N -0.857 5.857 15 Si 0.907 3.093 16 H -0.271 1.271 17 H -0.282 1.282 18 H -0.282 1.282 19 C 0.211 3.789 20 N -0.862 5.862 21 H 0.045 0.955 22 H 0.047 0.953 23 H 0.064 0.936 24 H 0.081 0.919 25 H 0.054 0.946 26 H 0.051 0.949 27 H 0.057 0.943 28 H 0.053 0.947 29 H 0.067 0.933 30 H 0.060 0.940 31 H 0.201 0.799 32 H 0.266 0.734 33 H 0.404 0.596 34 H 0.375 0.625 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.854 11.130 1.176 11.345 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.198 4.198 2 C -0.122 4.122 3 C -0.203 4.203 4 C 0.078 3.922 5 H 0.091 0.909 6 C -0.216 4.216 7 N -0.190 5.190 8 N -0.183 5.183 9 C -0.132 4.132 10 C -0.100 4.100 11 C -0.460 4.460 12 H 0.077 0.923 13 C -0.149 4.149 14 N -0.492 5.492 15 Si 0.735 3.265 16 H -0.196 1.196 17 H -0.208 1.208 18 H -0.208 1.208 19 C -0.010 4.010 20 N -0.413 5.413 21 H 0.064 0.936 22 H 0.066 0.934 23 H 0.083 0.917 24 H 0.100 0.900 25 H 0.073 0.927 26 H 0.070 0.930 27 H 0.076 0.924 28 H 0.072 0.928 29 H 0.087 0.913 30 H 0.079 0.921 31 H 0.217 0.783 32 H 0.077 0.923 33 H 0.233 0.767 34 H 0.200 0.800 Dipole moment (debyes) X Y Z Total from point charges 2.652 11.541 0.109 11.842 hybrid contribution -1.185 -0.857 1.466 2.070 sum 1.467 10.684 1.575 10.899 Atomic orbital electron populations 1.21737 0.94990 1.02693 1.00373 1.21427 0.96318 0.95244 0.99162 1.21897 1.01036 0.95944 1.01472 1.20673 0.93980 0.80099 0.97435 0.90909 1.22154 0.95193 1.01146 1.03120 1.47599 1.44058 1.08777 1.18602 1.76634 1.29622 0.99286 1.12737 1.24801 0.95650 0.95643 0.97092 1.17440 1.05838 0.89390 0.97335 1.18368 1.27480 0.94359 1.05783 0.92341 1.25415 0.95855 0.98662 0.94926 1.69513 1.41092 1.20176 1.18417 0.86272 0.79675 0.80756 0.79782 1.19552 1.20813 1.20817 1.18151 1.01686 0.92775 0.88340 1.40613 1.62380 1.13605 1.24717 0.93587 0.93357 0.91670 0.90027 0.92727 0.92995 0.92380 0.92770 0.91342 0.92069 0.78339 0.92288 0.76662 0.79957 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.24 9.04 37.16 0.34 -1.90 16 2 C -0.10 -1.56 2.62 -90.62 -0.24 -1.80 16 3 C -0.15 -1.68 8.84 37.16 0.33 -1.35 16 4 C 0.18 3.09 2.65 -67.93 -0.18 2.91 16 5 H 0.07 1.12 6.78 -51.93 -0.35 0.77 16 6 C -0.16 -2.43 9.09 37.16 0.34 -2.10 16 7 N -0.40 -8.78 2.51 -53.20 -0.13 -8.91 16 8 N -0.36 -9.01 12.28 30.94 0.38 -8.63 16 9 C 0.05 1.43 10.90 -16.85 -0.18 1.25 16 10 C -0.09 -2.35 5.96 -106.53 -0.63 -2.99 16 11 C -0.42 -11.73 9.24 -37.97 -0.35 -12.08 16 12 H 0.06 1.54 7.36 -52.49 -0.39 1.16 16 13 C 0.06 1.56 5.49 -17.33 -0.10 1.47 16 14 N -0.86 -23.65 10.32 55.53 0.57 -23.08 16 15 Si 0.91 20.50 29.56 -169.99 -5.02 15.47 16 16 H -0.27 -6.01 7.11 56.52 0.40 -5.60 16 17 H -0.28 -6.33 7.11 56.52 0.40 -5.93 16 18 H -0.28 -6.33 7.11 56.52 0.40 -5.93 16 19 C 0.21 4.97 8.06 -153.30 -1.24 3.73 16 20 N -0.86 -16.34 9.03 31.65 0.29 -16.05 16 21 H 0.05 0.67 8.14 -51.93 -0.42 0.25 16 22 H 0.05 0.68 8.14 -51.93 -0.42 0.26 16 23 H 0.06 1.30 7.60 -51.93 -0.39 0.90 16 24 H 0.08 1.41 8.14 -51.93 -0.42 0.99 16 25 H 0.05 0.58 8.14 -51.92 -0.42 0.16 16 26 H 0.05 0.54 8.14 -51.93 -0.42 0.12 16 27 H 0.06 0.62 6.43 -51.93 -0.33 0.28 16 28 H 0.05 0.88 8.14 -51.93 -0.42 0.45 16 29 H 0.07 1.15 8.14 -51.93 -0.42 0.73 16 30 H 0.06 0.74 6.43 -51.93 -0.33 0.40 16 31 H 0.20 5.66 5.76 -52.49 -0.30 5.36 16 32 H 0.27 6.85 8.30 -40.82 -0.34 6.51 16 33 H 0.40 7.39 8.31 -40.82 -0.34 7.05 16 34 H 0.37 5.88 7.63 -40.82 -0.31 5.56 16 LS Contribution 278.48 15.07 4.20 4.20 Total: -1.00 -29.89 278.48 -6.48 -36.37 By element: Atomic # 1 Polarization: 18.33 SS G_CDS: -4.85 Total: 13.48 kcal Atomic # 6 Polarization: -10.94 SS G_CDS: -1.91 Total: -12.85 kcal Atomic # 7 Polarization: -57.78 SS G_CDS: 1.11 Total: -56.67 kcal Atomic # 14 Polarization: 20.50 SS G_CDS: -5.02 Total: 15.47 kcal Total LS contribution 4.20 Total: 4.20 kcal Total: -29.89 -6.48 -36.37 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000307353792.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 96.308 kcal (2) G-P(sol) polarization free energy of solvation -29.888 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 66.420 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.485 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.373 kcal (6) G-S(sol) free energy of system = (1) + (5) 59.936 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.27 seconds