Wall clock time and date at job start Mon Mar 30 2020 02:32:58 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.53003 * 109.47007 * 2 1 4 4 C 1.53003 * 109.46792 * 119.99303 * 2 1 3 5 5 H 1.08995 * 109.47083 * 300.00157 * 4 2 1 6 6 C 1.53002 * 109.46792 * 180.02562 * 4 2 1 7 7 N 1.46496 * 109.46819 * 60.00244 * 4 2 1 8 8 N 1.39847 * 125.70538 * 59.97536 * 7 4 2 9 9 C 1.30259 * 109.54624 * 179.72874 * 8 7 4 10 10 C 1.41813 * 108.25122 * 0.44956 * 9 8 7 11 11 C 1.41193 * 126.63356 * 179.81641 * 10 9 8 12 12 H 1.07997 * 119.99560 * 179.41265 * 11 10 9 13 13 C 1.39555 * 120.00012 * 359.68933 * 11 10 9 14 14 N 1.31197 * 119.99676 * 359.72174 * 13 11 10 15 15 Si 1.86798 * 119.99657 * 179.72730 * 13 11 10 16 16 H 1.48490 * 109.47339 * 359.97438 * 15 13 11 17 17 H 1.48493 * 109.47239 * 120.00070 * 15 13 11 18 18 H 1.48504 * 109.46636 * 239.99629 * 15 13 11 19 19 C 1.35151 * 125.70037 * 239.99284 * 7 4 2 20 20 N 1.37731 * 126.56293 * 359.96515 * 19 7 4 21 21 H 1.09002 * 109.47625 * 300.00410 * 1 2 3 22 22 H 1.09003 * 109.47267 * 60.00296 * 1 2 3 23 23 H 1.09004 * 109.47286 * 180.02562 * 1 2 3 24 24 H 1.08995 * 109.46981 * 239.99528 * 2 1 3 25 25 H 1.09008 * 109.46522 * 299.99304 * 3 2 1 26 26 H 1.08995 * 109.47639 * 59.99371 * 3 2 1 27 27 H 1.08994 * 109.46739 * 180.02562 * 3 2 1 28 28 H 1.09000 * 109.46541 * 180.02562 * 6 4 2 29 29 H 1.08995 * 109.46981 * 300.00224 * 6 4 2 30 30 H 1.09000 * 109.47048 * 60.00706 * 6 4 2 31 31 H 1.08000 * 125.88061 * 180.29136 * 9 8 7 32 32 H 0.97001 * 119.99301 * 179.97438 * 14 13 11 33 33 H 0.97002 * 119.99950 * 179.97438 * 20 19 7 34 34 H 0.97002 * 120.00099 * 359.97438 * 20 19 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0399 -0.7211 1.2494 5 1 1.6766 -0.2072 2.1392 6 6 3.5700 -0.7206 1.2497 7 7 1.5516 -2.1023 1.2494 8 7 1.8145 -3.0610 0.2658 9 6 1.2314 -4.1818 0.5828 10 6 0.5412 -3.9927 1.8071 11 6 -0.2240 -4.9557 2.5003 12 1 -0.6991 -4.6969 3.4350 13 6 -0.3616 -6.2436 1.9806 14 7 0.2157 -6.5578 0.8451 15 14 -1.3677 -7.5198 2.9017 16 1 -1.9097 -6.9186 4.1465 17 1 -2.4895 -7.9789 2.0439 18 1 -0.5029 -8.6767 3.2469 19 6 0.7713 -2.6629 2.2000 20 7 0.2934 -2.0488 3.3364 21 1 -0.3634 0.5139 0.8899 22 1 -0.3634 0.5138 -0.8900 23 1 -0.3634 -1.0277 0.0005 24 1 1.8933 -0.5139 -0.8899 25 1 1.6767 1.9563 -0.8901 26 1 1.6766 1.9564 0.8899 27 1 3.1299 1.4425 -0.0005 28 1 3.9332 -1.2347 2.1396 29 1 3.9336 -1.2342 0.3598 30 1 3.9329 0.3072 1.2499 31 1 1.2654 -5.0970 0.0103 32 1 0.1203 -7.4530 0.4841 33 1 -0.2628 -2.5441 3.9579 34 1 0.5130 -1.1211 3.5153 RHF calculation, no. of doubly occupied orbitals= 42 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000307353792.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:32:58 Heat of formation + Delta-G solvation = 41.217049 kcal Electronic energy + Delta-G solvation = -15721.730336 eV Core-core repulsion = 13268.864143 eV Total energy + Delta-G solvation = -2452.866193 eV No. of doubly occupied orbitals = 42 Molecular weight (most abundant/longest-lived isotopes) = 223.138 amu Computer time = 0.30 seconds Orbital eigenvalues (eV) -41.27241 -37.86384 -35.05174 -34.97387 -32.47769 -30.27884 -29.43285 -27.75554 -26.13311 -24.44433 -22.16805 -21.06712 -20.05360 -18.71653 -17.86731 -16.95139 -16.24066 -16.04178 -15.43425 -15.29585 -14.59344 -14.47320 -13.94192 -13.52914 -13.22136 -13.12316 -12.94874 -12.83083 -12.60279 -12.53575 -12.32240 -11.96372 -11.74390 -11.66376 -11.51208 -11.36115 -10.98225 -10.50751 -9.11551 -8.33372 -8.14023 -5.62920 1.40823 1.47165 1.59904 1.79360 2.12500 2.43997 2.57622 3.42100 3.66094 3.73434 3.95311 4.06608 4.27675 4.42011 4.56915 4.74663 4.77281 4.80973 4.95753 5.01057 5.08814 5.15254 5.25860 5.29526 5.39141 5.48198 5.52006 5.90391 6.21758 6.33520 6.78185 7.11788 7.12741 7.37276 7.51231 7.85937 8.88696 Molecular weight = 223.14amu Principal moments of inertia in cm(-1) A = 0.047817 B = 0.007434 C = 0.007213 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 585.430245 B = 3765.766796 C = 3881.173458 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.136 4.136 2 C -0.097 4.097 3 C -0.137 4.137 4 C 0.165 3.835 5 H 0.099 0.901 6 C -0.151 4.151 7 N -0.385 5.385 8 N -0.371 5.371 9 C 0.020 3.980 10 C -0.140 4.140 11 C -0.449 4.449 12 H 0.063 0.937 13 C 0.005 3.995 14 N -0.889 5.889 15 Si 0.980 3.020 16 H -0.262 1.262 17 H -0.280 1.280 18 H -0.280 1.280 19 C 0.236 3.764 20 N -0.843 5.843 21 H 0.063 0.937 22 H 0.065 0.935 23 H 0.016 0.984 24 H 0.055 0.945 25 H 0.066 0.934 26 H 0.071 0.929 27 H 0.070 0.930 28 H 0.043 0.957 29 H 0.047 0.953 30 H 0.104 0.896 31 H 0.179 0.821 32 H 0.268 0.732 33 H 0.410 0.590 34 H 0.396 0.604 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.788 13.702 2.628 14.066 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.194 4.194 2 C -0.117 4.117 3 C -0.195 4.195 4 C 0.063 3.937 5 H 0.117 0.883 6 C -0.209 4.209 7 N -0.177 5.177 8 N -0.198 5.198 9 C -0.162 4.162 10 C -0.155 4.155 11 C -0.485 4.485 12 H 0.081 0.919 13 C -0.198 4.198 14 N -0.525 5.525 15 Si 0.804 3.196 16 H -0.185 1.185 17 H -0.206 1.206 18 H -0.205 1.205 19 C 0.011 3.989 20 N -0.396 5.396 21 H 0.082 0.918 22 H 0.084 0.916 23 H 0.035 0.965 24 H 0.073 0.927 25 H 0.085 0.915 26 H 0.090 0.910 27 H 0.089 0.911 28 H 0.063 0.937 29 H 0.066 0.934 30 H 0.123 0.877 31 H 0.195 0.805 32 H 0.078 0.922 33 H 0.240 0.760 34 H 0.225 0.775 Dipole moment (debyes) X Y Z Total from point charges 2.599 14.159 1.567 14.480 hybrid contribution -1.115 -1.428 1.025 2.082 sum 1.484 12.731 2.592 13.076 Atomic orbital electron populations 1.21698 0.95517 0.99974 1.02189 1.21377 0.95774 0.97568 0.96958 1.21842 1.01811 0.92721 1.03090 1.21294 0.95333 0.77457 0.99585 0.88274 1.22114 0.93647 1.03529 1.01620 1.48004 1.42511 1.10108 1.17038 1.76528 1.30018 0.99349 1.13861 1.24524 0.97684 0.95989 0.97956 1.17790 1.07911 0.91469 0.98296 1.18659 1.28279 0.95327 1.06252 0.91857 1.26279 0.97099 1.00598 0.95826 1.69670 1.42433 1.20585 1.19816 0.85165 0.77908 0.77876 0.78610 1.18541 1.20569 1.20548 1.18297 0.99687 0.92074 0.88853 1.40554 1.61408 1.14604 1.22988 0.91765 0.91629 0.96499 0.92691 0.91522 0.91044 0.91104 0.93750 0.93389 0.87709 0.80457 0.92219 0.75956 0.77496 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -4.09 9.04 71.98 0.65 -3.44 16 2 C -0.10 -2.75 2.62 -10.79 -0.03 -2.78 16 3 C -0.14 -2.54 8.84 71.98 0.64 -1.91 16 4 C 0.17 5.19 2.65 44.99 0.12 5.31 16 5 H 0.10 2.62 6.78 -2.39 -0.02 2.60 16 6 C -0.15 -4.26 9.09 71.98 0.65 -3.61 16 7 N -0.39 -16.82 2.51 -322.24 -0.81 -17.63 16 8 N -0.37 -19.29 12.28 -56.02 -0.69 -19.98 16 9 C 0.02 1.18 10.90 85.81 0.94 2.11 16 10 C -0.14 -7.90 5.96 -21.10 -0.13 -8.03 16 11 C -0.45 -25.44 9.24 23.31 0.22 -25.22 16 12 H 0.06 3.36 7.36 -2.91 -0.02 3.34 16 13 C 0.00 0.26 5.49 85.11 0.47 0.73 16 14 N -0.89 -51.35 10.32 21.77 0.22 -51.12 16 15 Si 0.98 42.89 29.56 68.60 2.03 44.92 16 16 H -0.26 -10.89 7.11 99.48 0.71 -10.18 16 17 H -0.28 -12.02 7.11 99.48 0.71 -11.31 16 18 H -0.28 -12.00 7.11 99.48 0.71 -11.29 16 19 C 0.24 11.02 8.06 133.00 1.07 12.09 16 20 N -0.84 -30.07 9.03 -53.76 -0.49 -30.55 16 21 H 0.06 1.66 8.14 -2.39 -0.02 1.64 16 22 H 0.06 1.71 8.14 -2.39 -0.02 1.69 16 23 H 0.02 0.64 7.60 -2.38 -0.02 0.62 16 24 H 0.05 1.86 8.14 -2.39 -0.02 1.84 16 25 H 0.07 1.12 8.14 -2.38 -0.02 1.10 16 26 H 0.07 1.09 8.14 -2.39 -0.02 1.07 16 27 H 0.07 1.16 6.43 -2.39 -0.02 1.14 16 28 H 0.04 1.33 8.14 -2.39 -0.02 1.31 16 29 H 0.05 1.55 8.14 -2.39 -0.02 1.54 16 30 H 0.10 2.04 6.43 -2.39 -0.02 2.03 16 31 H 0.18 10.89 5.76 -2.91 -0.02 10.87 16 32 H 0.27 14.39 8.30 -92.71 -0.77 13.62 16 33 H 0.41 14.15 8.31 -92.71 -0.77 13.38 16 34 H 0.40 10.96 7.63 -92.71 -0.71 10.25 16 Total: -1.00 -68.33 278.48 4.50 -63.82 By element: Atomic # 1 Polarization: 35.64 SS G_CDS: -0.37 Total: 35.27 kcal Atomic # 6 Polarization: -29.33 SS G_CDS: 4.60 Total: -24.74 kcal Atomic # 7 Polarization: -117.52 SS G_CDS: -1.76 Total: -119.28 kcal Atomic # 14 Polarization: 42.89 SS G_CDS: 2.03 Total: 44.92 kcal Total: -68.33 4.50 -63.82 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000307353792.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 105.040 kcal (2) G-P(sol) polarization free energy of solvation -68.325 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 36.715 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.502 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.823 kcal (6) G-S(sol) free energy of system = (1) + (5) 41.217 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.30 seconds