Wall clock time and date at job start Mon Mar 30 2020 02:37:43 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.52997 * 109.47372 * 2 1 4 4 N 1.46499 * 109.47422 * 120.00732 * 2 1 3 5 5 C 1.35968 * 126.06645 * 275.28576 * 4 2 1 6 6 C 1.35712 * 107.55071 * 180.09662 * 5 4 2 7 7 N 1.40792 * 126.06728 * 179.89496 * 6 5 4 8 8 C 1.46500 * 120.00177 * 179.71402 * 7 6 5 9 9 H 1.09007 * 109.47033 * 325.00360 * 8 7 6 10 10 C 1.53000 * 109.47016 * 85.00200 * 8 7 6 11 11 C 1.50693 * 109.47378 * 205.00138 * 8 7 6 12 12 H 1.08000 * 120.00302 * 354.36393 * 11 8 7 13 13 C 1.37886 * 120.00163 * 174.36414 * 11 8 7 14 14 N 1.31507 * 119.99948 * 156.61717 * 13 11 8 15 15 Si 1.86798 * 119.99876 * 336.89217 * 13 11 8 16 16 H 1.48492 * 109.47195 * 179.72334 * 15 13 11 17 17 H 1.48500 * 109.47108 * 299.72619 * 15 13 11 18 18 H 1.48504 * 109.47211 * 59.72053 * 15 13 11 19 19 C 1.40223 * 107.86130 * 359.63264 * 6 5 4 20 20 N 1.30859 * 108.36874 * 0.22750 * 19 6 5 21 21 H 1.09005 * 109.46883 * 300.00140 * 1 2 3 22 22 H 1.09004 * 109.47108 * 59.99082 * 1 2 3 23 23 H 1.08999 * 109.47578 * 179.97438 * 1 2 3 24 24 H 1.09001 * 109.46642 * 240.00319 * 2 1 3 25 25 H 1.08997 * 109.47582 * 300.00223 * 3 2 1 26 26 H 1.09001 * 109.46976 * 60.00524 * 3 2 1 27 27 H 1.09003 * 109.47159 * 180.02562 * 3 2 1 28 28 H 1.07998 * 126.22986 * 359.97438 * 5 4 2 29 29 H 0.97005 * 119.99938 * 359.71600 * 7 6 5 30 30 H 1.09007 * 109.46955 * 293.10784 * 10 8 7 31 31 H 1.08994 * 109.47507 * 53.11040 * 10 8 7 32 32 H 1.09003 * 109.46967 * 173.11555 * 10 8 7 33 33 H 0.97003 * 120.00050 * 355.20807 * 14 13 11 34 34 H 1.08001 * 125.81513 * 180.22475 * 19 6 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 7 2.0184 -0.6907 1.1961 5 6 2.1898 -0.1373 2.4261 6 6 2.6583 -1.1086 3.2502 7 7 2.9726 -0.9578 4.6142 8 6 3.4657 -2.1031 5.3832 9 1 2.9809 -3.0135 5.0305 10 6 4.9795 -2.2274 5.1990 11 6 3.1524 -1.9004 6.8432 12 1 2.7200 -0.9692 7.1785 13 6 3.4177 -2.9036 7.7511 14 7 3.5912 -2.6117 9.0216 15 14 3.5382 -4.6765 7.1752 16 1 3.8356 -5.5547 8.3351 17 1 2.2494 -5.0864 6.5617 18 1 4.6252 -4.7980 6.1708 19 6 2.7680 -2.2903 2.5033 20 7 2.3857 -2.0401 1.2770 21 1 -0.3633 0.5139 0.8900 22 1 -0.3633 0.5140 -0.8899 23 1 -0.3634 -1.0276 -0.0005 24 1 1.8932 -0.5138 -0.8900 25 1 1.6767 1.9564 -0.8899 26 1 1.6768 1.9562 0.8900 27 1 3.1301 1.4424 -0.0005 28 1 1.9913 0.8890 2.6976 29 1 2.8626 -0.0956 5.0449 30 1 5.1990 -2.4953 4.1654 31 1 5.4538 -1.2751 5.4360 32 1 5.3642 -3.0004 5.8642 33 1 3.6019 -1.6854 9.3093 34 1 3.1098 -3.2444 2.8765 RHF calculation, no. of doubly occupied orbitals= 42 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000307525883.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:37:43 Heat of formation + Delta-G solvation = 72.825369 kcal Electronic energy + Delta-G solvation = -15180.618968 eV Core-core repulsion = 12729.123415 eV Total energy + Delta-G solvation = -2451.495554 eV No. of doubly occupied orbitals = 42 Molecular weight (most abundant/longest-lived isotopes) = 223.138 amu Computer time = 0.26 seconds Orbital eigenvalues (eV) -40.58660 -36.20699 -34.98730 -32.45530 -30.13380 -29.52646 -27.51153 -26.80550 -24.66696 -22.64730 -21.01687 -19.81996 -19.15164 -17.60474 -16.71872 -15.09100 -14.82092 -14.48556 -14.40840 -13.80319 -13.40900 -12.99332 -12.63535 -12.50437 -12.30129 -12.08903 -12.08043 -11.57807 -11.40137 -11.23010 -11.17291 -10.45533 -10.30582 -10.02922 -9.84492 -9.37176 -8.93342 -8.85199 -8.22808 -6.57321 -6.20433 -4.10996 2.36138 2.85294 3.40248 3.45330 3.59965 3.61751 4.45984 4.48907 4.74635 4.83692 4.98238 5.17970 5.24061 5.33091 5.49059 5.52224 5.56245 5.73249 5.91071 6.02723 6.18489 6.31305 6.42314 6.65814 6.76402 6.89023 7.08690 7.43114 7.54223 7.86975 8.17101 8.30048 8.46967 8.85621 9.01957 9.55050 10.85779 Molecular weight = 223.14amu Principal moments of inertia in cm(-1) A = 0.050749 B = 0.006223 C = 0.006003 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 551.603459 B = 4498.430828 C = 4663.512340 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.164 4.164 2 C 0.167 3.833 3 C -0.161 4.161 4 N -0.375 5.375 5 C -0.065 4.065 6 C 0.092 3.908 7 N -0.725 5.725 8 C 0.262 3.738 9 H 0.021 0.979 10 C -0.159 4.159 11 C -0.616 4.616 12 H 0.060 0.940 13 C 0.041 3.959 14 N -0.895 5.895 15 Si 1.034 2.966 16 H -0.284 1.284 17 H -0.281 1.281 18 H -0.275 1.275 19 C 0.006 3.994 20 N -0.286 5.286 21 H 0.061 0.939 22 H 0.070 0.930 23 H 0.063 0.937 24 H 0.094 0.906 25 H 0.074 0.926 26 H 0.065 0.935 27 H 0.064 0.936 28 H 0.159 0.841 29 H 0.390 0.610 30 H 0.023 0.977 31 H 0.043 0.957 32 H 0.053 0.947 33 H 0.270 0.730 34 H 0.176 0.824 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.155 5.697 -16.276 17.531 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.223 4.223 2 C 0.065 3.935 3 C -0.219 4.219 4 N -0.165 5.165 5 C -0.212 4.212 6 C -0.019 4.019 7 N -0.358 5.358 8 C 0.157 3.843 9 H 0.039 0.961 10 C -0.218 4.218 11 C -0.654 4.654 12 H 0.078 0.922 13 C -0.165 4.165 14 N -0.528 5.528 15 Si 0.862 3.138 16 H -0.210 1.210 17 H -0.208 1.208 18 H -0.201 1.201 19 C -0.183 4.183 20 N -0.109 5.109 21 H 0.080 0.920 22 H 0.088 0.912 23 H 0.082 0.918 24 H 0.112 0.888 25 H 0.093 0.907 26 H 0.084 0.916 27 H 0.083 0.917 28 H 0.176 0.824 29 H 0.223 0.777 30 H 0.042 0.958 31 H 0.062 0.938 32 H 0.072 0.928 33 H 0.079 0.921 34 H 0.193 0.807 Dipole moment (debyes) X Y Z Total from point charges -3.095 3.539 -16.897 17.538 hybrid contribution -0.145 2.320 0.566 2.392 sum -3.240 5.858 -16.330 17.649 Atomic orbital electron populations 1.22250 0.94479 1.03028 1.02523 1.20966 0.94184 0.92423 0.85943 1.22147 1.02224 0.94524 1.03045 1.48138 1.53969 1.06763 1.07672 1.21343 1.14541 0.99266 0.86039 1.18015 1.03227 0.92990 0.87634 1.44388 1.74359 1.13133 1.03898 1.18702 0.89269 0.84978 0.91383 0.96094 1.22553 1.00384 1.00841 0.98059 1.22035 1.47816 1.04431 0.91127 0.92204 1.25641 0.92577 1.04624 0.93707 1.70854 1.42685 1.22207 1.17048 0.84180 0.77473 0.76188 0.75984 1.20963 1.20765 1.20051 1.23515 1.04938 0.99149 0.90684 1.77040 1.19751 0.94056 1.20006 0.91955 0.91153 0.91826 0.88794 0.90675 0.91597 0.91657 0.82363 0.77731 0.95802 0.93809 0.92793 0.92053 0.80719 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.62 9.52 37.16 0.35 -1.26 16 2 C 0.17 1.88 3.93 -67.93 -0.27 1.61 16 3 C -0.16 -1.42 8.84 37.16 0.33 -1.09 16 4 N -0.37 -5.87 3.55 -54.50 -0.19 -6.06 16 5 C -0.07 -1.08 10.66 -16.62 -0.18 -1.26 16 6 C 0.09 1.78 6.94 -83.90 -0.58 1.19 16 7 N -0.73 -15.35 5.31 -53.45 -0.28 -15.63 16 8 C 0.26 6.21 2.17 -69.09 -0.15 6.06 16 9 H 0.02 0.52 5.74 -51.93 -0.30 0.22 16 10 C -0.16 -3.57 9.22 37.16 0.34 -3.23 16 11 C -0.62 -16.95 8.95 -34.44 -0.31 -17.26 16 12 H 0.06 1.76 7.96 -52.49 -0.42 1.34 16 13 C 0.04 1.17 5.19 -17.82 -0.09 1.07 16 14 N -0.90 -26.89 13.70 55.43 0.76 -26.13 16 15 Si 1.03 24.70 26.44 -169.99 -4.50 20.21 16 16 H -0.28 -6.82 7.11 56.52 0.40 -6.41 16 17 H -0.28 -6.50 7.11 56.52 0.40 -6.09 16 18 H -0.27 -6.07 6.15 56.52 0.35 -5.72 16 19 C 0.01 0.11 11.15 -17.22 -0.19 -0.08 16 20 N -0.29 -5.22 12.57 30.70 0.39 -4.83 16 21 H 0.06 0.64 8.14 -51.93 -0.42 0.22 16 22 H 0.07 0.50 8.14 -51.93 -0.42 0.08 16 23 H 0.06 0.71 8.14 -51.93 -0.42 0.29 16 24 H 0.09 1.00 8.14 -51.93 -0.42 0.58 16 25 H 0.07 0.48 8.14 -51.93 -0.42 0.06 16 26 H 0.06 0.58 7.18 -51.93 -0.37 0.21 16 27 H 0.06 0.63 8.14 -51.93 -0.42 0.20 16 28 H 0.16 2.20 7.30 -52.49 -0.38 1.82 16 29 H 0.39 7.94 8.66 -40.82 -0.35 7.58 16 30 H 0.02 0.48 8.14 -51.92 -0.42 0.05 16 31 H 0.04 0.97 8.14 -51.93 -0.42 0.55 16 32 H 0.05 1.24 5.47 -51.93 -0.28 0.96 16 33 H 0.27 8.05 8.73 -40.82 -0.36 7.69 16 34 H 0.18 3.21 7.45 -52.49 -0.39 2.82 16 LS Contribution 282.12 15.07 4.25 4.25 Total: -1.00 -30.58 282.12 -5.41 -35.99 By element: Atomic # 1 Polarization: 11.52 SS G_CDS: -5.09 Total: 6.44 kcal Atomic # 6 Polarization: -13.49 SS G_CDS: -0.74 Total: -14.23 kcal Atomic # 7 Polarization: -53.32 SS G_CDS: 0.67 Total: -52.65 kcal Atomic # 14 Polarization: 24.70 SS G_CDS: -4.50 Total: 20.21 kcal Total LS contribution 4.25 Total: 4.25 kcal Total: -30.58 -5.41 -35.99 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000307525883.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 108.816 kcal (2) G-P(sol) polarization free energy of solvation -30.583 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 78.234 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.408 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.991 kcal (6) G-S(sol) free energy of system = (1) + (5) 72.825 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.26 seconds