Wall clock time and date at job start Mon Mar 30 2020 02:37:43 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.52997 * 109.47372 * 2 1 4 4 N 1.46499 * 109.47422 * 120.00732 * 2 1 3 5 5 C 1.35968 * 126.06645 * 275.28576 * 4 2 1 6 6 C 1.35712 * 107.55071 * 180.09662 * 5 4 2 7 7 N 1.40792 * 126.06728 * 179.89496 * 6 5 4 8 8 C 1.46500 * 120.00177 * 179.71402 * 7 6 5 9 9 H 1.09007 * 109.47033 * 325.00360 * 8 7 6 10 10 C 1.53000 * 109.47016 * 85.00200 * 8 7 6 11 11 C 1.50693 * 109.47378 * 205.00138 * 8 7 6 12 12 H 1.08000 * 120.00302 * 354.36393 * 11 8 7 13 13 C 1.37886 * 120.00163 * 174.36414 * 11 8 7 14 14 N 1.31507 * 119.99948 * 156.61717 * 13 11 8 15 15 Si 1.86798 * 119.99876 * 336.89217 * 13 11 8 16 16 H 1.48492 * 109.47195 * 179.72334 * 15 13 11 17 17 H 1.48500 * 109.47108 * 299.72619 * 15 13 11 18 18 H 1.48504 * 109.47211 * 59.72053 * 15 13 11 19 19 C 1.40223 * 107.86130 * 359.63264 * 6 5 4 20 20 N 1.30859 * 108.36874 * 0.22750 * 19 6 5 21 21 H 1.09005 * 109.46883 * 300.00140 * 1 2 3 22 22 H 1.09004 * 109.47108 * 59.99082 * 1 2 3 23 23 H 1.08999 * 109.47578 * 179.97438 * 1 2 3 24 24 H 1.09001 * 109.46642 * 240.00319 * 2 1 3 25 25 H 1.08997 * 109.47582 * 300.00223 * 3 2 1 26 26 H 1.09001 * 109.46976 * 60.00524 * 3 2 1 27 27 H 1.09003 * 109.47159 * 180.02562 * 3 2 1 28 28 H 1.07998 * 126.22986 * 359.97438 * 5 4 2 29 29 H 0.97005 * 119.99938 * 359.71600 * 7 6 5 30 30 H 1.09007 * 109.46955 * 293.10784 * 10 8 7 31 31 H 1.08994 * 109.47507 * 53.11040 * 10 8 7 32 32 H 1.09003 * 109.46967 * 173.11555 * 10 8 7 33 33 H 0.97003 * 120.00050 * 355.20807 * 14 13 11 34 34 H 1.08001 * 125.81513 * 180.22475 * 19 6 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 7 2.0184 -0.6907 1.1961 5 6 2.1898 -0.1373 2.4261 6 6 2.6583 -1.1086 3.2502 7 7 2.9726 -0.9578 4.6142 8 6 3.4657 -2.1031 5.3832 9 1 2.9809 -3.0135 5.0305 10 6 4.9795 -2.2274 5.1990 11 6 3.1524 -1.9004 6.8432 12 1 2.7200 -0.9692 7.1785 13 6 3.4177 -2.9036 7.7511 14 7 3.5912 -2.6117 9.0216 15 14 3.5382 -4.6765 7.1752 16 1 3.8356 -5.5547 8.3351 17 1 2.2494 -5.0864 6.5617 18 1 4.6252 -4.7980 6.1708 19 6 2.7680 -2.2903 2.5033 20 7 2.3857 -2.0401 1.2770 21 1 -0.3633 0.5139 0.8900 22 1 -0.3633 0.5140 -0.8899 23 1 -0.3634 -1.0276 -0.0005 24 1 1.8932 -0.5138 -0.8900 25 1 1.6767 1.9564 -0.8899 26 1 1.6768 1.9562 0.8900 27 1 3.1301 1.4424 -0.0005 28 1 1.9913 0.8890 2.6976 29 1 2.8626 -0.0956 5.0449 30 1 5.1990 -2.4953 4.1654 31 1 5.4538 -1.2751 5.4360 32 1 5.3642 -3.0004 5.8642 33 1 3.6019 -1.6854 9.3093 34 1 3.1098 -3.2444 2.8765 RHF calculation, no. of doubly occupied orbitals= 42 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000307525883.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:37:43 Heat of formation + Delta-G solvation = 52.149612 kcal Electronic energy + Delta-G solvation = -15181.515536 eV Core-core repulsion = 12729.123415 eV Total energy + Delta-G solvation = -2452.392122 eV No. of doubly occupied orbitals = 42 Molecular weight (most abundant/longest-lived isotopes) = 223.138 amu Computer time = 0.25 seconds Orbital eigenvalues (eV) -41.92534 -37.68689 -36.28442 -34.43280 -31.80662 -30.81789 -28.50722 -28.02867 -26.70459 -23.83891 -22.69401 -21.15414 -20.60894 -19.59729 -18.09416 -16.36196 -16.18386 -16.08896 -15.67344 -15.23801 -14.87824 -14.39581 -14.22633 -13.96075 -13.73560 -13.32396 -13.11413 -13.03978 -12.83596 -12.37221 -12.30750 -12.12358 -11.91728 -11.68370 -11.59083 -11.18423 -10.74437 -10.38764 -10.14913 -8.78664 -7.74835 -6.34592 1.02512 1.50382 1.55622 1.69522 1.75165 2.14835 2.50355 3.00846 3.07264 3.70802 4.01385 4.07628 4.16345 4.21261 4.57878 4.61300 4.68302 4.78589 4.84881 4.87907 4.90959 4.93947 4.99050 5.13203 5.22033 5.26741 5.56470 5.61187 5.85752 6.04741 6.33096 6.44042 6.80167 6.96451 7.35755 7.41383 8.61410 Molecular weight = 223.14amu Principal moments of inertia in cm(-1) A = 0.050749 B = 0.006223 C = 0.006003 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 551.603459 B = 4498.430828 C = 4663.512340 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.158 4.158 2 C 0.153 3.847 3 C -0.155 4.155 4 N -0.364 5.364 5 C -0.040 4.040 6 C 0.056 3.944 7 N -0.733 5.733 8 C 0.268 3.732 9 H 0.021 0.979 10 C -0.151 4.151 11 C -0.618 4.618 12 H 0.027 0.973 13 C -0.006 4.006 14 N -0.928 5.928 15 Si 1.072 2.928 16 H -0.287 1.287 17 H -0.268 1.268 18 H -0.244 1.244 19 C -0.012 4.012 20 N -0.302 5.302 21 H 0.057 0.943 22 H 0.104 0.896 23 H 0.045 0.955 24 H 0.101 0.899 25 H 0.106 0.894 26 H 0.067 0.933 27 H 0.056 0.944 28 H 0.187 0.813 29 H 0.390 0.610 30 H 0.045 0.955 31 H 0.037 0.963 32 H 0.046 0.954 33 H 0.256 0.744 34 H 0.176 0.824 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.510 6.090 -18.961 20.222 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.217 4.217 2 C 0.053 3.947 3 C -0.213 4.213 4 N -0.154 5.154 5 C -0.188 4.188 6 C -0.053 4.053 7 N -0.367 5.367 8 C 0.162 3.838 9 H 0.038 0.962 10 C -0.210 4.210 11 C -0.656 4.656 12 H 0.045 0.955 13 C -0.206 4.206 14 N -0.562 5.562 15 Si 0.893 3.107 16 H -0.213 1.213 17 H -0.194 1.194 18 H -0.168 1.168 19 C -0.199 4.199 20 N -0.126 5.126 21 H 0.076 0.924 22 H 0.122 0.878 23 H 0.064 0.936 24 H 0.119 0.881 25 H 0.125 0.875 26 H 0.086 0.914 27 H 0.075 0.925 28 H 0.204 0.796 29 H 0.223 0.777 30 H 0.064 0.936 31 H 0.056 0.944 32 H 0.065 0.935 33 H 0.065 0.935 34 H 0.193 0.807 Dipole moment (debyes) X Y Z Total from point charges -3.464 3.954 -19.651 20.342 hybrid contribution -0.133 2.370 1.271 2.692 sum -3.598 6.324 -18.380 19.767 Atomic orbital electron populations 1.22217 0.93097 1.02342 1.04003 1.21493 0.95263 0.93587 0.84396 1.22148 1.01662 0.92778 1.04748 1.48691 1.52038 1.06059 1.08639 1.21773 1.11433 0.99869 0.85774 1.18197 1.05814 0.94178 0.87091 1.44076 1.75626 1.12263 1.04751 1.18447 0.90186 0.85950 0.89234 0.96151 1.22418 0.99105 1.00345 0.99177 1.22248 1.46772 1.02954 0.93599 0.95466 1.26959 0.91866 1.08524 0.93266 1.70972 1.45573 1.21264 1.18394 0.83715 0.79116 0.71560 0.76351 1.21251 1.19359 1.16810 1.23582 1.05870 0.99381 0.91105 1.77007 1.20447 0.95558 1.19626 0.92384 0.87776 0.93579 0.88086 0.87523 0.91400 0.92505 0.79617 0.77729 0.93640 0.94357 0.93535 0.93521 0.80733 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.61 9.52 71.98 0.69 -1.92 16 2 C 0.15 2.95 3.93 44.99 0.18 3.13 16 3 C -0.16 -2.14 8.84 71.98 0.64 -1.51 16 4 N -0.36 -10.56 3.55 -326.35 -1.16 -11.72 16 5 C -0.04 -1.24 10.66 83.47 0.89 -0.35 16 6 C 0.06 2.10 6.94 37.60 0.26 2.36 16 7 N -0.73 -30.72 5.31 -323.02 -1.71 -32.43 16 8 C 0.27 12.61 2.17 44.24 0.10 12.70 16 9 H 0.02 0.98 5.74 -2.38 -0.01 0.97 16 10 C -0.15 -6.61 9.22 71.98 0.66 -5.95 16 11 C -0.62 -34.58 8.95 25.60 0.23 -34.35 16 12 H 0.03 1.66 7.96 -2.91 -0.02 1.63 16 13 C -0.01 -0.33 5.19 84.66 0.44 0.11 16 14 N -0.93 -57.10 13.70 21.45 0.29 -56.81 16 15 Si 1.07 49.26 26.44 68.60 1.81 51.07 16 16 H -0.29 -13.25 7.11 99.48 0.71 -12.54 16 17 H -0.27 -11.70 7.11 99.48 0.71 -10.99 16 18 H -0.24 -9.98 6.15 99.48 0.61 -9.37 16 19 C -0.01 -0.46 11.15 85.32 0.95 0.49 16 20 N -0.30 -10.58 12.57 -56.78 -0.71 -11.29 16 21 H 0.06 1.02 8.14 -2.38 -0.02 1.00 16 22 H 0.10 1.03 8.14 -2.38 -0.02 1.01 16 23 H 0.05 0.93 8.14 -2.39 -0.02 0.91 16 24 H 0.10 1.85 8.14 -2.39 -0.02 1.83 16 25 H 0.11 0.84 8.14 -2.39 -0.02 0.82 16 26 H 0.07 0.93 7.18 -2.39 -0.02 0.91 16 27 H 0.06 0.91 8.14 -2.39 -0.02 0.89 16 28 H 0.19 4.59 7.30 -2.91 -0.02 4.56 16 29 H 0.39 15.91 8.66 -92.70 -0.80 15.11 16 30 H 0.04 1.76 8.14 -2.38 -0.02 1.74 16 31 H 0.04 1.67 8.14 -2.39 -0.02 1.65 16 32 H 0.05 2.07 5.47 -2.39 -0.01 2.05 16 33 H 0.26 15.92 8.73 -92.71 -0.81 15.11 16 34 H 0.18 6.28 7.45 -2.91 -0.02 6.26 16 Total: -1.00 -66.61 282.12 3.70 -62.91 By element: Atomic # 1 Polarization: 23.41 SS G_CDS: 0.15 Total: 23.56 kcal Atomic # 6 Polarization: -30.31 SS G_CDS: 5.03 Total: -25.28 kcal Atomic # 7 Polarization: -108.97 SS G_CDS: -3.29 Total: -112.26 kcal Atomic # 14 Polarization: 49.26 SS G_CDS: 1.81 Total: 51.07 kcal Total: -66.61 3.70 -62.91 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000307525883.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 115.058 kcal (2) G-P(sol) polarization free energy of solvation -66.606 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 48.452 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.698 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.909 kcal (6) G-S(sol) free energy of system = (1) + (5) 52.150 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.25 seconds