Wall clock time and date at job start Mon Mar 30 2020 03:00:14 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31517 * 1 3 3 Si 1.86803 * 119.99708 * 2 1 4 4 H 1.48504 * 109.46815 * 180.02562 * 3 2 1 5 5 H 1.48504 * 109.47061 * 300.00064 * 3 2 1 6 6 H 1.48496 * 109.47390 * 60.00205 * 3 2 1 7 7 C 1.37871 * 120.00096 * 180.02562 * 2 1 3 8 8 H 1.08003 * 119.99791 * 180.02562 * 7 2 1 9 9 C 1.50700 * 120.00181 * 359.97438 * 7 2 1 10 10 H 1.09001 * 110.43339 * 57.46102 * 9 7 2 11 11 C 1.54893 * 110.59699 * 294.84048 * 9 7 2 12 12 C 1.54887 * 102.74533 * 203.32375 * 11 9 7 13 13 C 1.54266 * 104.19888 * 37.94403 * 12 11 9 14 14 H 1.09000 * 110.03178 * 95.72084 * 13 12 11 15 15 N 1.46901 * 110.03046 * 217.10337 * 13 12 11 16 16 C 1.46900 * 110.99864 * 273.54091 * 15 13 12 17 17 C 1.54257 * 110.03778 * 272.16922 * 16 15 13 18 18 C 1.54886 * 104.19709 * 217.10850 * 17 16 15 19 19 C 1.54887 * 102.74927 * 37.94351 * 18 17 16 20 20 C 1.53884 * 110.02923 * 155.00292 * 16 15 13 21 21 C 1.53872 * 106.59640 * 336.38805 * 13 12 11 22 22 H 0.96998 * 119.99977 * 0.02562 * 1 2 3 23 23 H 1.09001 * 110.75228 * 85.01111 * 11 9 7 24 24 H 1.09000 * 110.75571 * 321.63744 * 11 9 7 25 25 H 1.09001 * 110.48816 * 279.26329 * 12 11 9 26 26 H 1.09004 * 110.48531 * 156.62545 * 12 11 9 27 27 H 1.00906 * 110.99480 * 149.59485 * 15 13 12 28 28 H 1.09006 * 110.01463 * 33.61860 * 16 15 13 29 29 H 1.09000 * 110.48989 * 335.78739 * 17 16 15 30 30 H 1.08997 * 110.48861 * 98.43049 * 17 16 15 31 31 H 1.09005 * 110.75527 * 279.62720 * 18 17 16 32 32 H 1.08999 * 110.75608 * 156.25907 * 18 17 16 33 33 H 1.09006 * 110.48524 * 203.37843 * 19 18 17 34 34 H 1.08995 * 110.48612 * 80.73921 * 19 18 17 35 35 H 1.08999 * 110.03165 * 238.57264 * 20 16 15 36 36 H 1.09005 * 110.03112 * 0.02562 * 20 16 15 37 37 H 1.09002 * 110.03208 * 119.28196 * 21 13 12 38 38 H 1.08996 * 110.03362 * 240.71095 * 21 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 3.7091 1.3464 -0.0006 5 1 1.8903 2.3965 -1.2125 6 1 1.8904 2.3965 1.2125 7 6 2.0045 -1.1940 -0.0005 8 1 3.0846 -1.1939 -0.0001 9 6 1.2511 -2.4991 -0.0005 10 1 0.5847 -2.5538 -0.8614 11 6 0.4517 -2.6668 1.3155 12 6 0.2736 -4.2023 1.4139 13 6 1.6112 -4.7721 0.8982 14 1 2.2735 -4.9874 1.7367 15 7 1.3707 -5.9950 0.1205 16 6 1.3219 -7.1741 0.9954 17 6 2.7413 -7.7448 1.1929 18 6 2.5332 -9.2794 1.2206 19 6 1.4312 -9.4942 0.1537 20 6 0.4888 -8.2865 0.3346 21 6 2.2327 -3.6892 -0.0011 22 1 -0.4850 0.8400 -0.0004 23 1 -0.5157 -2.1694 1.2458 24 1 1.0214 -2.2888 2.1644 25 1 -0.5507 -4.5321 0.7815 26 1 0.1052 -4.5012 2.4485 27 1 2.0679 -6.1081 -0.6002 28 1 0.8890 -6.9058 1.9592 29 1 3.3854 -7.4622 0.3602 30 1 3.1632 -7.4000 2.1368 31 1 2.1891 -9.6048 2.2024 32 1 3.4495 -9.7986 0.9396 33 1 0.8970 -10.4261 0.3393 34 1 1.8637 -9.4942 -0.8468 35 1 -0.3477 -8.5587 0.9781 36 1 0.1212 -7.9515 -0.6354 37 1 3.1969 -3.3781 0.4009 38 1 2.3560 -4.0710 -1.0146 RHF calculation, no. of doubly occupied orbitals= 43 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000307604119.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:00:14 Heat of formation + Delta-G solvation = -30.542184 kcal Electronic energy + Delta-G solvation = -15584.493554 eV Core-core repulsion = 13232.055990 eV Total energy + Delta-G solvation = -2352.437564 eV No. of doubly occupied orbitals = 43 Molecular weight (most abundant/longest-lived isotopes) = 223.163 amu Computer time = 0.26 seconds Orbital eigenvalues (eV) -38.78760 -36.86332 -33.31731 -31.64642 -28.66503 -28.05427 -27.59715 -25.13552 -23.49199 -20.76300 -19.92045 -19.19164 -18.89327 -16.45127 -15.93324 -15.48833 -14.60772 -14.52485 -13.69397 -13.45460 -13.27223 -13.07390 -12.27101 -11.95518 -11.86423 -11.24797 -11.11279 -11.05418 -10.96321 -10.73151 -10.65056 -10.47903 -10.42381 -10.29178 -9.97511 -9.79530 -9.46762 -9.07309 -8.68810 -8.29414 -7.91573 -5.93944 -3.96406 3.33013 3.41001 3.44682 4.47609 4.49510 4.64746 4.69833 4.99152 5.37186 5.42788 5.49771 5.52277 5.61209 5.65426 5.72018 5.79893 5.84436 5.93277 6.04377 6.05336 6.22569 6.26750 6.32908 6.48434 6.60681 6.73665 6.80356 6.95946 7.12120 7.29592 7.43058 7.67649 7.77573 7.87003 7.97435 8.13886 8.53940 9.07004 9.67158 11.15596 Molecular weight = 223.16amu Principal moments of inertia in cm(-1) A = 0.067048 B = 0.005325 C = 0.005152 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 417.509302 B = 5256.662890 C = 5433.827127 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.889 5.889 2 C 0.062 3.938 3 Si 0.887 3.113 4 H -0.274 1.274 5 H -0.285 1.285 6 H -0.285 1.285 7 C -0.513 4.513 8 H 0.054 0.946 9 C 0.052 3.948 10 H 0.032 0.968 11 C -0.100 4.100 12 C -0.116 4.116 13 C 0.084 3.916 14 H 0.031 0.969 15 N -0.677 5.677 16 C 0.083 3.917 17 C -0.154 4.154 18 C -0.122 4.122 19 C -0.125 4.125 20 C -0.117 4.117 21 C -0.117 4.117 22 H 0.258 0.742 23 H 0.065 0.935 24 H 0.044 0.956 25 H 0.064 0.936 26 H 0.037 0.963 27 H 0.335 0.665 28 H 0.076 0.924 29 H 0.066 0.934 30 H 0.061 0.939 31 H 0.064 0.936 32 H 0.061 0.939 33 H 0.060 0.940 34 H 0.063 0.937 35 H 0.061 0.939 36 H 0.076 0.924 37 H 0.052 0.948 38 H 0.048 0.952 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.807 -15.598 2.201 16.000 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.528 5.528 2 C -0.139 4.139 3 Si 0.715 3.285 4 H -0.199 1.199 5 H -0.211 1.211 6 H -0.211 1.211 7 C -0.551 4.551 8 H 0.072 0.928 9 C 0.034 3.966 10 H 0.050 0.950 11 C -0.139 4.139 12 C -0.154 4.154 13 C -0.025 4.025 14 H 0.050 0.950 15 N -0.307 5.307 16 C -0.028 4.028 17 C -0.193 4.193 18 C -0.160 4.160 19 C -0.163 4.163 20 C -0.155 4.155 21 C -0.155 4.155 22 H 0.068 0.932 23 H 0.084 0.916 24 H 0.062 0.938 25 H 0.083 0.917 26 H 0.056 0.944 27 H 0.154 0.846 28 H 0.094 0.906 29 H 0.084 0.916 30 H 0.080 0.920 31 H 0.083 0.917 32 H 0.080 0.920 33 H 0.079 0.921 34 H 0.082 0.918 35 H 0.079 0.921 36 H 0.095 0.905 37 H 0.071 0.929 38 H 0.066 0.934 Dipole moment (debyes) X Y Z Total from point charges 1.969 -15.371 2.182 15.650 hybrid contribution 1.430 0.850 0.323 1.694 sum 3.399 -14.521 2.505 15.123 Atomic orbital electron populations 1.69979 1.05848 1.26172 1.50809 1.24978 0.94806 0.98916 0.95250 0.86623 0.80169 0.84207 0.77504 1.19887 1.21103 1.21126 1.21273 0.92691 0.90754 1.50392 0.92821 1.19374 0.92411 0.90917 0.93933 0.95029 1.22419 1.01183 0.90733 0.99557 1.22509 0.96464 0.98420 0.98006 1.22275 0.96605 0.89078 0.94576 0.95044 1.60868 1.54402 1.01435 1.14039 1.22241 0.93528 0.90687 0.96314 1.23143 0.98477 0.95961 1.01709 1.22432 0.98540 0.95929 0.99138 1.22376 0.96873 0.98147 0.98924 1.22196 0.97566 0.93905 1.01808 1.22456 0.99697 0.96300 0.97011 0.93227 0.91591 0.93753 0.91698 0.94421 0.84563 0.90616 0.91579 0.92008 0.91714 0.92036 0.92082 0.91840 0.92067 0.90547 0.92949 0.93366 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -26.05 12.29 55.43 0.68 -25.37 16 2 C 0.06 1.75 5.35 -17.82 -0.10 1.65 16 3 Si 0.89 21.57 29.54 -169.99 -5.02 16.55 16 4 H -0.27 -6.57 7.11 56.52 0.40 -6.16 16 5 H -0.28 -6.89 7.11 56.52 0.40 -6.49 16 6 H -0.29 -6.89 7.11 56.52 0.40 -6.49 16 7 C -0.51 -14.33 8.47 -34.44 -0.29 -14.62 16 8 H 0.05 1.48 7.54 -52.48 -0.40 1.09 16 9 C 0.05 1.33 2.71 -90.11 -0.24 1.09 16 10 H 0.03 0.89 8.14 -51.93 -0.42 0.46 16 11 C -0.10 -2.40 5.75 -24.74 -0.14 -2.55 16 12 C -0.12 -2.30 6.35 -25.07 -0.16 -2.46 16 13 C 0.08 1.53 3.07 -66.60 -0.20 1.33 16 14 H 0.03 0.56 7.81 -51.93 -0.41 0.16 16 15 N -0.68 -10.64 5.93 -97.40 -0.58 -11.22 16 16 C 0.08 1.10 3.04 -66.59 -0.20 0.90 16 17 C -0.15 -1.79 6.38 -25.08 -0.16 -1.95 16 18 C -0.12 -1.20 6.91 -24.74 -0.17 -1.37 16 19 C -0.13 -1.24 6.83 -25.08 -0.17 -1.41 16 20 C -0.12 -1.36 6.60 -25.61 -0.17 -1.53 16 21 C -0.12 -2.45 6.04 -25.61 -0.15 -2.60 16 22 H 0.26 7.19 8.31 -40.82 -0.34 6.85 16 23 H 0.07 1.71 7.56 -51.93 -0.39 1.32 16 24 H 0.04 1.08 8.05 -51.93 -0.42 0.67 16 25 H 0.06 1.32 8.05 -51.93 -0.42 0.90 16 26 H 0.04 0.68 8.14 -51.93 -0.42 0.26 16 27 H 0.34 5.00 7.42 -39.29 -0.29 4.71 16 28 H 0.08 1.08 7.75 -51.93 -0.40 0.67 16 29 H 0.07 0.78 7.56 -51.93 -0.39 0.39 16 30 H 0.06 0.73 8.14 -51.93 -0.42 0.30 16 31 H 0.06 0.60 8.14 -51.93 -0.42 0.18 16 32 H 0.06 0.55 8.14 -51.93 -0.42 0.12 16 33 H 0.06 0.53 8.14 -51.93 -0.42 0.11 16 34 H 0.06 0.62 8.14 -51.93 -0.42 0.19 16 35 H 0.06 0.68 8.14 -51.93 -0.42 0.26 16 36 H 0.08 0.97 7.92 -51.93 -0.41 0.56 16 37 H 0.05 1.11 7.66 -51.93 -0.40 0.71 16 38 H 0.05 0.96 7.49 -51.93 -0.39 0.57 16 LS Contribution 294.84 15.07 4.44 4.44 Total: -1.00 -28.30 294.84 -9.47 -37.77 By element: Atomic # 1 Polarization: 8.18 SS G_CDS: -6.83 Total: 1.35 kcal Atomic # 6 Polarization: -21.36 SS G_CDS: -2.17 Total: -23.53 kcal Atomic # 7 Polarization: -36.69 SS G_CDS: 0.10 Total: -36.59 kcal Atomic # 14 Polarization: 21.57 SS G_CDS: -5.02 Total: 16.55 kcal Total LS contribution 4.44 Total: 4.44 kcal Total: -28.30 -9.47 -37.77 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000307604119.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 7.231 kcal (2) G-P(sol) polarization free energy of solvation -28.302 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -21.071 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.471 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.773 kcal (6) G-S(sol) free energy of system = (1) + (5) -30.542 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.26 seconds