Wall clock time and date at job start Mon Mar 30 2020 03:00:14 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31517 * 1 3 3 Si 1.86803 * 119.99708 * 2 1 4 4 H 1.48504 * 109.46815 * 180.02562 * 3 2 1 5 5 H 1.48504 * 109.47061 * 300.00064 * 3 2 1 6 6 H 1.48496 * 109.47390 * 60.00205 * 3 2 1 7 7 C 1.37871 * 120.00096 * 180.02562 * 2 1 3 8 8 H 1.08003 * 119.99791 * 180.02562 * 7 2 1 9 9 C 1.50700 * 120.00181 * 359.97438 * 7 2 1 10 10 H 1.09001 * 110.43339 * 57.46102 * 9 7 2 11 11 C 1.54893 * 110.59699 * 294.84048 * 9 7 2 12 12 C 1.54887 * 102.74533 * 203.32375 * 11 9 7 13 13 C 1.54266 * 104.19888 * 37.94403 * 12 11 9 14 14 H 1.09000 * 110.03178 * 95.72084 * 13 12 11 15 15 N 1.46901 * 110.03046 * 217.10337 * 13 12 11 16 16 C 1.46900 * 110.99864 * 273.54091 * 15 13 12 17 17 C 1.54257 * 110.03778 * 272.16922 * 16 15 13 18 18 C 1.54886 * 104.19709 * 217.10850 * 17 16 15 19 19 C 1.54887 * 102.74927 * 37.94351 * 18 17 16 20 20 C 1.53884 * 110.02923 * 155.00292 * 16 15 13 21 21 C 1.53872 * 106.59640 * 336.38805 * 13 12 11 22 22 H 0.96998 * 119.99977 * 0.02562 * 1 2 3 23 23 H 1.09001 * 110.75228 * 85.01111 * 11 9 7 24 24 H 1.09000 * 110.75571 * 321.63744 * 11 9 7 25 25 H 1.09001 * 110.48816 * 279.26329 * 12 11 9 26 26 H 1.09004 * 110.48531 * 156.62545 * 12 11 9 27 27 H 1.00906 * 110.99480 * 149.59485 * 15 13 12 28 28 H 1.09006 * 110.01463 * 33.61860 * 16 15 13 29 29 H 1.09000 * 110.48989 * 335.78739 * 17 16 15 30 30 H 1.08997 * 110.48861 * 98.43049 * 17 16 15 31 31 H 1.09005 * 110.75527 * 279.62720 * 18 17 16 32 32 H 1.08999 * 110.75608 * 156.25907 * 18 17 16 33 33 H 1.09006 * 110.48524 * 203.37843 * 19 18 17 34 34 H 1.08995 * 110.48612 * 80.73921 * 19 18 17 35 35 H 1.08999 * 110.03165 * 238.57264 * 20 16 15 36 36 H 1.09005 * 110.03112 * 0.02562 * 20 16 15 37 37 H 1.09002 * 110.03208 * 119.28196 * 21 13 12 38 38 H 1.08996 * 110.03362 * 240.71095 * 21 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 3.7091 1.3464 -0.0006 5 1 1.8903 2.3965 -1.2125 6 1 1.8904 2.3965 1.2125 7 6 2.0045 -1.1940 -0.0005 8 1 3.0846 -1.1939 -0.0001 9 6 1.2511 -2.4991 -0.0005 10 1 0.5847 -2.5538 -0.8614 11 6 0.4517 -2.6668 1.3155 12 6 0.2736 -4.2023 1.4139 13 6 1.6112 -4.7721 0.8982 14 1 2.2735 -4.9874 1.7367 15 7 1.3707 -5.9950 0.1205 16 6 1.3219 -7.1741 0.9954 17 6 2.7413 -7.7448 1.1929 18 6 2.5332 -9.2794 1.2206 19 6 1.4312 -9.4942 0.1537 20 6 0.4888 -8.2865 0.3346 21 6 2.2327 -3.6892 -0.0011 22 1 -0.4850 0.8400 -0.0004 23 1 -0.5157 -2.1694 1.2458 24 1 1.0214 -2.2888 2.1644 25 1 -0.5507 -4.5321 0.7815 26 1 0.1052 -4.5012 2.4485 27 1 2.0679 -6.1081 -0.6002 28 1 0.8890 -6.9058 1.9592 29 1 3.3854 -7.4622 0.3602 30 1 3.1632 -7.4000 2.1368 31 1 2.1891 -9.6048 2.2024 32 1 3.4495 -9.7986 0.9396 33 1 0.8970 -10.4261 0.3393 34 1 1.8637 -9.4942 -0.8468 35 1 -0.3477 -8.5587 0.9781 36 1 0.1212 -7.9515 -0.6354 37 1 3.1969 -3.3781 0.4009 38 1 2.3560 -4.0710 -1.0146 RHF calculation, no. of doubly occupied orbitals= 43 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000307604119.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:00:14 Heat of formation + Delta-G solvation = -46.268006 kcal Electronic energy + Delta-G solvation = -15585.175477 eV Core-core repulsion = 13232.055990 eV Total energy + Delta-G solvation = -2353.119486 eV No. of doubly occupied orbitals = 43 Molecular weight (most abundant/longest-lived isotopes) = 223.163 amu Computer time = 0.30 seconds Orbital eigenvalues (eV) -40.00711 -38.31732 -35.03719 -33.36339 -29.92442 -29.54002 -28.98647 -26.64562 -25.34789 -21.70101 -21.20449 -20.74548 -20.47075 -18.53172 -17.08173 -16.56391 -16.54386 -15.87109 -15.38045 -14.90071 -14.36529 -14.16893 -14.14147 -13.61307 -13.06992 -12.98539 -12.69416 -12.62047 -12.24552 -11.93691 -11.89144 -11.86663 -11.62712 -11.57150 -11.49429 -11.38738 -11.33300 -10.96229 -10.77924 -10.44401 -9.17813 -8.10241 -6.20415 1.40169 1.41554 1.53183 2.44232 3.19950 3.30587 3.76325 3.80074 4.00333 4.09342 4.13532 4.41118 4.55657 4.58169 4.67341 4.74867 4.79079 4.82297 4.89398 4.96752 5.00709 5.07087 5.13208 5.19553 5.24959 5.28555 5.35533 5.40230 5.44612 5.51241 5.58459 5.65910 5.93287 6.01716 6.33553 6.42639 6.61708 6.91772 7.47073 8.98946 Molecular weight = 223.16amu Principal moments of inertia in cm(-1) A = 0.067048 B = 0.005325 C = 0.005152 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 417.509302 B = 5256.662890 C = 5433.827127 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.921 5.921 2 C 0.010 3.990 3 Si 0.954 3.046 4 H -0.266 1.266 5 H -0.281 1.281 6 H -0.280 1.280 7 C -0.532 4.532 8 H 0.053 0.947 9 C 0.043 3.957 10 H -0.005 1.005 11 C -0.094 4.094 12 C -0.104 4.104 13 C 0.098 3.902 14 H 0.043 0.957 15 N -0.682 5.682 16 C 0.080 3.920 17 C -0.152 4.152 18 C -0.117 4.117 19 C -0.121 4.121 20 C -0.115 4.115 21 C -0.108 4.108 22 H 0.259 0.741 23 H 0.035 0.965 24 H 0.034 0.966 25 H 0.058 0.942 26 H 0.059 0.941 27 H 0.341 0.659 28 H 0.067 0.933 29 H 0.064 0.936 30 H 0.060 0.940 31 H 0.071 0.929 32 H 0.074 0.926 33 H 0.075 0.925 34 H 0.065 0.935 35 H 0.066 0.934 36 H 0.064 0.936 37 H 0.051 0.949 38 H 0.056 0.944 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.966 -17.002 2.668 17.661 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.561 5.561 2 C -0.188 4.188 3 Si 0.779 3.221 4 H -0.190 1.190 5 H -0.207 1.207 6 H -0.206 1.206 7 C -0.571 4.571 8 H 0.071 0.929 9 C 0.024 3.976 10 H 0.013 0.987 11 C -0.133 4.133 12 C -0.143 4.143 13 C -0.011 4.011 14 H 0.061 0.939 15 N -0.314 5.314 16 C -0.031 4.031 17 C -0.191 4.191 18 C -0.155 4.155 19 C -0.158 4.158 20 C -0.153 4.153 21 C -0.146 4.146 22 H 0.068 0.932 23 H 0.054 0.946 24 H 0.053 0.947 25 H 0.077 0.923 26 H 0.077 0.923 27 H 0.161 0.839 28 H 0.086 0.914 29 H 0.083 0.917 30 H 0.079 0.921 31 H 0.090 0.910 32 H 0.092 0.908 33 H 0.094 0.906 34 H 0.083 0.917 35 H 0.085 0.915 36 H 0.083 0.917 37 H 0.070 0.930 38 H 0.074 0.926 Dipole moment (debyes) X Y Z Total from point charges 3.139 -16.797 2.646 17.291 hybrid contribution 1.033 1.282 0.154 1.653 sum 4.172 -15.515 2.801 16.308 Atomic orbital electron populations 1.70113 1.07335 1.27053 1.51569 1.25790 0.95643 1.02494 0.94886 0.85573 0.79143 0.79772 0.77572 1.19004 1.20673 1.20629 1.21648 0.92893 0.92182 1.50331 0.92890 1.19355 0.92931 0.92189 0.93106 0.98726 1.22222 0.99060 0.93650 0.98369 1.22379 0.97331 0.95171 0.99370 1.21988 0.95305 0.89402 0.94449 0.93898 1.60790 1.54750 1.01402 1.14410 1.22332 0.95043 0.90102 0.95573 1.23093 0.97087 0.97354 1.01566 1.22423 0.99093 0.94460 0.99531 1.22356 0.96529 0.97815 0.99125 1.22169 0.97962 0.94151 1.01063 1.22301 0.98494 0.95453 0.98315 0.93169 0.94617 0.94725 0.92314 0.92279 0.83869 0.91425 0.91715 0.92123 0.91011 0.90770 0.90593 0.91665 0.91539 0.91738 0.93046 0.92568 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -55.29 12.29 21.45 0.26 -55.03 16 2 C 0.01 0.59 5.35 84.65 0.45 1.04 16 3 Si 0.95 44.55 29.54 68.60 2.03 46.58 16 4 H -0.27 -11.95 7.11 99.48 0.71 -11.25 16 5 H -0.28 -12.87 7.11 99.48 0.71 -12.16 16 6 H -0.28 -12.82 7.11 99.48 0.71 -12.11 16 7 C -0.53 -30.22 8.47 25.60 0.22 -30.00 16 8 H 0.05 2.94 7.54 -2.91 -0.02 2.92 16 9 C 0.04 2.24 2.71 -10.46 -0.03 2.21 16 10 H -0.01 -0.32 8.14 -2.39 -0.02 -0.34 16 11 C -0.09 -4.63 5.75 31.89 0.18 -4.44 16 12 C -0.10 -4.09 6.35 31.67 0.20 -3.89 16 13 C 0.10 3.47 3.07 45.64 0.14 3.61 16 14 H 0.04 1.45 7.81 -2.39 -0.02 1.43 16 15 N -0.68 -20.45 5.93 -462.07 -2.74 -23.19 16 16 C 0.08 1.95 3.04 45.64 0.14 2.09 16 17 C -0.15 -3.15 6.38 31.66 0.20 -2.95 16 18 C -0.12 -1.93 6.91 31.88 0.22 -1.71 16 19 C -0.12 -2.03 6.83 31.67 0.22 -1.81 16 20 C -0.12 -2.46 6.60 31.32 0.21 -2.26 16 21 C -0.11 -4.49 6.04 31.32 0.19 -4.30 16 22 H 0.26 14.75 8.31 -92.71 -0.77 13.98 16 23 H 0.03 1.92 7.56 -2.39 -0.02 1.90 16 24 H 0.03 1.72 8.05 -2.39 -0.02 1.70 16 25 H 0.06 2.37 8.05 -2.39 -0.02 2.35 16 26 H 0.06 2.06 8.14 -2.38 -0.02 2.04 16 27 H 0.34 9.63 7.42 -89.69 -0.67 8.96 16 28 H 0.07 1.78 7.75 -2.38 -0.02 1.76 16 29 H 0.06 1.37 7.56 -2.39 -0.02 1.35 16 30 H 0.06 1.27 8.14 -2.39 -0.02 1.25 16 31 H 0.07 1.10 8.14 -2.38 -0.02 1.08 16 32 H 0.07 1.07 8.14 -2.39 -0.02 1.05 16 33 H 0.08 1.08 8.14 -2.38 -0.02 1.06 16 34 H 0.06 1.09 8.14 -2.39 -0.02 1.07 16 35 H 0.07 1.34 8.14 -2.39 -0.02 1.32 16 36 H 0.06 1.54 7.92 -2.38 -0.02 1.52 16 37 H 0.05 2.14 7.66 -2.39 -0.02 2.12 16 38 H 0.06 2.21 7.49 -2.39 -0.02 2.20 16 Total: -1.00 -61.08 294.84 2.23 -58.85 By element: Atomic # 1 Polarization: 14.85 SS G_CDS: 0.34 Total: 15.19 kcal Atomic # 6 Polarization: -44.75 SS G_CDS: 2.34 Total: -42.41 kcal Atomic # 7 Polarization: -75.74 SS G_CDS: -2.47 Total: -78.21 kcal Atomic # 14 Polarization: 44.55 SS G_CDS: 2.03 Total: 46.58 kcal Total: -61.08 2.23 -58.85 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000307604119.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 12.580 kcal (2) G-P(sol) polarization free energy of solvation -61.080 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -48.500 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.232 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -58.848 kcal (6) G-S(sol) free energy of system = (1) + (5) -46.268 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.30 seconds