Wall clock time and date at job start Mon Mar 30 2020 03:00:16 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31515 * 1 3 3 Si 1.86800 * 119.99911 * 2 1 4 4 H 1.48496 * 109.46683 * 179.97438 * 3 2 1 5 5 H 1.48492 * 109.47426 * 300.00172 * 3 2 1 6 6 H 1.48501 * 109.46833 * 60.00415 * 3 2 1 7 7 C 1.37871 * 119.99684 * 180.02562 * 2 1 3 8 8 H 1.08000 * 120.00205 * 179.72412 * 7 2 1 9 9 C 1.50706 * 120.00436 * 359.97438 * 7 2 1 10 10 H 1.09000 * 110.66971 * 59.02182 * 9 7 2 11 11 C 1.54892 * 110.75410 * 295.79367 * 9 7 2 12 12 C 1.54467 * 104.09928 * 203.89345 * 11 9 7 13 13 C 1.53874 * 106.68681 * 23.34026 * 12 11 9 14 14 H 1.08998 * 110.07313 * 240.85720 * 13 12 11 15 15 N 1.46897 * 110.03670 * 119.44241 * 13 12 11 16 16 C 1.46905 * 110.99576 * 87.83218 * 15 13 12 17 17 C 1.54266 * 110.03287 * 272.16831 * 16 15 13 18 18 C 1.54887 * 104.19511 * 217.10910 * 17 16 15 19 19 C 1.54883 * 102.75278 * 37.94365 * 18 17 16 20 20 C 1.53876 * 110.02904 * 155.00605 * 16 15 13 21 21 C 1.54269 * 106.59849 * 0.15842 * 13 12 11 22 22 H 0.97004 * 120.00247 * 359.97438 * 1 2 3 23 23 H 1.08999 * 110.48574 * 322.41651 * 11 9 7 24 24 H 1.08999 * 110.48606 * 85.05839 * 11 9 7 25 25 H 1.09002 * 109.85727 * 264.10349 * 12 11 9 26 26 H 1.08997 * 110.16532 * 142.74484 * 12 11 9 27 27 H 1.00891 * 111.00232 * 211.78657 * 15 13 12 28 28 H 1.08994 * 110.01641 * 33.61150 * 16 15 13 29 29 H 1.08996 * 110.48826 * 335.78874 * 17 16 15 30 30 H 1.09004 * 110.48312 * 98.42594 * 17 16 15 31 31 H 1.09002 * 110.75778 * 279.62624 * 18 17 16 32 32 H 1.09006 * 110.75881 * 156.25974 * 18 17 16 33 33 H 1.09001 * 110.49156 * 203.38152 * 19 18 17 34 34 H 1.09000 * 110.59893 * 80.79102 * 19 18 17 35 35 H 1.09006 * 110.02853 * 238.56949 * 20 16 15 36 36 H 1.08999 * 110.03249 * 359.94616 * 20 16 15 37 37 H 1.09004 * 110.48770 * 217.71180 * 21 13 12 38 38 H 1.08998 * 110.48437 * 95.06692 * 21 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 3.7091 1.3463 0.0006 5 1 1.8904 2.3965 -1.2124 6 1 1.8904 2.3964 1.2126 7 6 2.0044 -1.1940 -0.0005 8 1 3.0844 -1.1941 -0.0050 9 6 1.2509 -2.4992 -0.0005 10 1 0.6036 -2.5698 -0.8747 11 6 0.4312 -2.6597 1.3038 12 6 0.2476 -4.1867 1.4474 13 6 1.3887 -4.8456 0.6526 14 1 0.9796 -5.4633 -0.1469 15 7 2.2175 -5.6646 1.5470 16 6 1.6838 -7.0289 1.6568 17 6 0.6385 -7.0978 2.7893 18 6 0.8680 -8.4873 3.4340 19 6 2.4091 -8.6349 3.3884 20 6 2.8096 -8.0062 2.0378 21 6 2.2298 -3.6982 0.0559 22 1 -0.4851 0.8401 0.0004 23 1 0.9854 -2.2621 2.1540 24 1 -0.5347 -2.1632 1.2109 25 1 -0.7159 -4.4843 1.0337 26 1 0.3084 -4.4755 2.4967 27 1 3.1785 -5.6759 1.2400 28 1 1.2319 -7.3299 0.7118 29 1 0.8124 -6.3058 3.5177 30 1 -0.3702 -7.0280 2.3820 31 1 0.3874 -9.2698 2.8467 32 1 0.5090 -8.4997 4.4631 33 1 2.6927 -9.6870 3.4184 34 1 2.8709 -8.0927 4.2135 35 1 2.9035 -8.7821 1.2779 36 1 3.7521 -7.4684 2.1403 37 1 2.5733 -3.9578 -0.9455 38 1 3.0764 -3.4694 0.7033 RHF calculation, no. of doubly occupied orbitals= 43 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000307604120.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:00:16 Heat of formation + Delta-G solvation = -29.377259 kcal Electronic energy + Delta-G solvation = -15647.101749 eV Core-core repulsion = 13294.714700 eV Total energy + Delta-G solvation = -2352.387049 eV No. of doubly occupied orbitals = 43 Molecular weight (most abundant/longest-lived isotopes) = 223.163 amu Computer time = 0.26 seconds Orbital eigenvalues (eV) -38.73666 -36.79564 -33.33785 -31.66889 -28.79285 -27.89078 -27.59144 -25.17750 -23.51516 -20.63794 -19.95675 -19.01015 -18.95304 -16.41958 -15.64977 -15.36864 -14.95030 -14.48830 -14.07347 -13.73809 -13.24783 -12.59414 -12.18923 -12.13617 -11.40264 -11.13387 -11.08508 -10.98256 -10.97410 -10.89276 -10.66250 -10.57557 -10.41503 -10.21850 -9.89905 -9.76022 -9.38095 -9.04247 -8.68954 -8.29494 -7.98510 -5.93915 -3.96090 3.33794 3.41689 3.45739 4.47492 4.53413 4.62470 4.72529 5.00880 5.38460 5.43481 5.51457 5.59830 5.67571 5.68755 5.74315 5.82928 5.90727 5.98030 6.05465 6.08615 6.21408 6.27740 6.43888 6.49070 6.59217 6.77511 6.87211 6.97776 7.08710 7.28436 7.44390 7.70299 7.77875 7.86727 8.00773 8.11795 8.53747 9.06472 9.67474 11.15774 Molecular weight = 223.16amu Principal moments of inertia in cm(-1) A = 0.060429 B = 0.005517 C = 0.005324 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 463.239195 B = 5073.839372 C = 5257.627783 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.891 5.891 2 C 0.062 3.938 3 Si 0.888 3.112 4 H -0.274 1.274 5 H -0.285 1.285 6 H -0.285 1.285 7 C -0.510 4.510 8 H 0.054 0.946 9 C 0.051 3.949 10 H 0.028 0.972 11 C -0.098 4.098 12 C -0.116 4.116 13 C 0.083 3.917 14 H 0.031 0.969 15 N -0.676 5.676 16 C 0.081 3.919 17 C -0.112 4.112 18 C -0.126 4.126 19 C -0.119 4.119 20 C -0.127 4.127 21 C -0.119 4.119 22 H 0.258 0.742 23 H 0.046 0.954 24 H 0.062 0.938 25 H 0.040 0.960 26 H 0.059 0.941 27 H 0.335 0.665 28 H 0.041 0.959 29 H 0.079 0.921 30 H 0.058 0.942 31 H 0.061 0.939 32 H 0.063 0.937 33 H 0.058 0.942 34 H 0.066 0.934 35 H 0.059 0.941 36 H 0.069 0.931 37 H 0.041 0.959 38 H 0.063 0.937 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.458 -14.962 4.491 15.814 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.530 5.530 2 C -0.140 4.140 3 Si 0.716 3.284 4 H -0.198 1.198 5 H -0.212 1.212 6 H -0.211 1.211 7 C -0.548 4.548 8 H 0.073 0.927 9 C 0.032 3.968 10 H 0.046 0.954 11 C -0.137 4.137 12 C -0.154 4.154 13 C -0.026 4.026 14 H 0.049 0.951 15 N -0.308 5.308 16 C -0.029 4.029 17 C -0.151 4.151 18 C -0.164 4.164 19 C -0.157 4.157 20 C -0.165 4.165 21 C -0.157 4.157 22 H 0.068 0.932 23 H 0.065 0.935 24 H 0.081 0.919 25 H 0.059 0.941 26 H 0.078 0.922 27 H 0.154 0.846 28 H 0.058 0.942 29 H 0.098 0.902 30 H 0.077 0.923 31 H 0.080 0.920 32 H 0.082 0.918 33 H 0.077 0.923 34 H 0.085 0.915 35 H 0.078 0.922 36 H 0.088 0.912 37 H 0.060 0.940 38 H 0.082 0.918 Dipole moment (debyes) X Y Z Total from point charges 2.002 -14.620 5.046 15.596 hybrid contribution 0.627 0.572 -0.921 1.253 sum 2.629 -14.048 4.124 14.875 Atomic orbital electron populations 1.69977 1.05872 1.26175 1.50937 1.24972 0.94810 0.98946 0.95232 0.86604 0.80194 0.84126 0.77474 1.19842 1.21160 1.21100 1.21180 0.92779 0.90599 1.50281 0.92731 1.19521 0.92247 0.91132 0.93851 0.95413 1.22289 1.01039 0.90764 0.99572 1.22347 0.95430 0.98452 0.99172 1.22353 0.94557 0.93816 0.91893 0.95080 1.60851 1.05512 1.10258 1.54160 1.22232 0.94791 0.88487 0.97360 1.22467 0.97987 0.96731 0.97870 1.22504 0.95843 0.97599 1.00449 1.22275 0.96119 0.99837 0.97466 1.22369 0.98714 0.98157 0.97271 1.22665 0.99251 0.95895 0.97924 0.93244 0.93515 0.91884 0.94089 0.92245 0.84578 0.94152 0.90211 0.92285 0.92024 0.91800 0.92274 0.91515 0.92195 0.91210 0.94005 0.91812 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -26.10 12.23 55.43 0.68 -25.42 16 2 C 0.06 1.74 5.35 -17.82 -0.10 1.65 16 3 Si 0.89 21.64 29.54 -169.99 -5.02 16.62 16 4 H -0.27 -6.57 7.11 56.52 0.40 -6.17 16 5 H -0.29 -6.90 7.11 56.52 0.40 -6.50 16 6 H -0.28 -6.91 7.11 56.52 0.40 -6.51 16 7 C -0.51 -14.29 8.51 -34.44 -0.29 -14.58 16 8 H 0.05 1.51 7.78 -52.49 -0.41 1.11 16 9 C 0.05 1.30 2.76 -89.77 -0.25 1.06 16 10 H 0.03 0.77 8.14 -51.93 -0.42 0.34 16 11 C -0.10 -2.37 5.69 -24.96 -0.14 -2.52 16 12 C -0.12 -2.30 6.11 -25.51 -0.16 -2.46 16 13 C 0.08 1.53 3.25 -66.59 -0.22 1.31 16 14 H 0.03 0.57 7.44 -51.93 -0.39 0.18 16 15 N -0.68 -10.67 5.96 -97.40 -0.58 -11.25 16 16 C 0.08 1.10 3.25 -66.59 -0.22 0.88 16 17 C -0.11 -1.46 5.41 -25.07 -0.14 -1.59 16 18 C -0.13 -1.32 6.91 -24.74 -0.17 -1.49 16 19 C -0.12 -1.21 6.83 -25.07 -0.17 -1.38 16 20 C -0.13 -1.41 6.48 -25.61 -0.17 -1.58 16 21 C -0.12 -2.51 5.67 -25.07 -0.14 -2.65 16 22 H 0.26 7.19 8.31 -40.82 -0.34 6.85 16 23 H 0.05 1.18 8.04 -51.93 -0.42 0.76 16 24 H 0.06 1.64 7.51 -51.93 -0.39 1.26 16 25 H 0.04 0.78 8.14 -51.93 -0.42 0.36 16 26 H 0.06 1.13 6.58 -51.93 -0.34 0.79 16 27 H 0.34 4.97 7.59 -39.30 -0.30 4.67 16 28 H 0.04 0.57 7.44 -51.93 -0.39 0.18 16 29 H 0.08 1.15 7.39 -51.93 -0.38 0.77 16 30 H 0.06 0.77 8.14 -51.93 -0.42 0.35 16 31 H 0.06 0.60 8.14 -51.93 -0.42 0.18 16 32 H 0.06 0.62 8.14 -51.93 -0.42 0.20 16 33 H 0.06 0.52 8.14 -51.93 -0.42 0.09 16 34 H 0.07 0.69 8.14 -51.93 -0.42 0.27 16 35 H 0.06 0.61 8.14 -51.93 -0.42 0.18 16 36 H 0.07 0.77 7.47 -51.93 -0.39 0.39 16 37 H 0.04 0.83 8.14 -51.93 -0.42 0.41 16 38 H 0.06 1.36 7.86 -51.93 -0.41 0.95 16 LS Contribution 291.93 15.07 4.40 4.40 Total: -1.00 -28.47 291.93 -9.42 -37.89 By element: Atomic # 1 Polarization: 7.85 SS G_CDS: -6.75 Total: 1.11 kcal Atomic # 6 Polarization: -21.20 SS G_CDS: -2.15 Total: -23.35 kcal Atomic # 7 Polarization: -36.76 SS G_CDS: 0.10 Total: -36.67 kcal Atomic # 14 Polarization: 21.64 SS G_CDS: -5.02 Total: 16.62 kcal Total LS contribution 4.40 Total: 4.40 kcal Total: -28.47 -9.42 -37.89 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000307604120.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 8.513 kcal (2) G-P(sol) polarization free energy of solvation -28.465 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -19.953 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.425 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.890 kcal (6) G-S(sol) free energy of system = (1) + (5) -29.377 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.26 seconds