Wall clock time and date at job start Mon Mar 30 2020 03:00:16 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31515 * 1 3 3 Si 1.86800 * 119.99911 * 2 1 4 4 H 1.48496 * 109.46683 * 179.97438 * 3 2 1 5 5 H 1.48492 * 109.47426 * 300.00172 * 3 2 1 6 6 H 1.48501 * 109.46833 * 60.00415 * 3 2 1 7 7 C 1.37871 * 119.99684 * 180.02562 * 2 1 3 8 8 H 1.08000 * 120.00205 * 179.72412 * 7 2 1 9 9 C 1.50706 * 120.00436 * 359.97438 * 7 2 1 10 10 H 1.09000 * 110.66971 * 59.02182 * 9 7 2 11 11 C 1.54892 * 110.75410 * 295.79367 * 9 7 2 12 12 C 1.54467 * 104.09928 * 203.89345 * 11 9 7 13 13 C 1.53874 * 106.68681 * 23.34026 * 12 11 9 14 14 H 1.08998 * 110.07313 * 240.85720 * 13 12 11 15 15 N 1.46897 * 110.03670 * 119.44241 * 13 12 11 16 16 C 1.46905 * 110.99576 * 87.83218 * 15 13 12 17 17 C 1.54266 * 110.03287 * 272.16831 * 16 15 13 18 18 C 1.54887 * 104.19511 * 217.10910 * 17 16 15 19 19 C 1.54883 * 102.75278 * 37.94365 * 18 17 16 20 20 C 1.53876 * 110.02904 * 155.00605 * 16 15 13 21 21 C 1.54269 * 106.59849 * 0.15842 * 13 12 11 22 22 H 0.97004 * 120.00247 * 359.97438 * 1 2 3 23 23 H 1.08999 * 110.48574 * 322.41651 * 11 9 7 24 24 H 1.08999 * 110.48606 * 85.05839 * 11 9 7 25 25 H 1.09002 * 109.85727 * 264.10349 * 12 11 9 26 26 H 1.08997 * 110.16532 * 142.74484 * 12 11 9 27 27 H 1.00891 * 111.00232 * 211.78657 * 15 13 12 28 28 H 1.08994 * 110.01641 * 33.61150 * 16 15 13 29 29 H 1.08996 * 110.48826 * 335.78874 * 17 16 15 30 30 H 1.09004 * 110.48312 * 98.42594 * 17 16 15 31 31 H 1.09002 * 110.75778 * 279.62624 * 18 17 16 32 32 H 1.09006 * 110.75881 * 156.25974 * 18 17 16 33 33 H 1.09001 * 110.49156 * 203.38152 * 19 18 17 34 34 H 1.09000 * 110.59893 * 80.79102 * 19 18 17 35 35 H 1.09006 * 110.02853 * 238.56949 * 20 16 15 36 36 H 1.08999 * 110.03249 * 359.94616 * 20 16 15 37 37 H 1.09004 * 110.48770 * 217.71180 * 21 13 12 38 38 H 1.08998 * 110.48437 * 95.06692 * 21 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 3.7091 1.3463 0.0006 5 1 1.8904 2.3965 -1.2124 6 1 1.8904 2.3964 1.2126 7 6 2.0044 -1.1940 -0.0005 8 1 3.0844 -1.1941 -0.0050 9 6 1.2509 -2.4992 -0.0005 10 1 0.6036 -2.5698 -0.8747 11 6 0.4312 -2.6597 1.3038 12 6 0.2476 -4.1867 1.4474 13 6 1.3887 -4.8456 0.6526 14 1 0.9796 -5.4633 -0.1469 15 7 2.2175 -5.6646 1.5470 16 6 1.6838 -7.0289 1.6568 17 6 0.6385 -7.0978 2.7893 18 6 0.8680 -8.4873 3.4340 19 6 2.4091 -8.6349 3.3884 20 6 2.8096 -8.0062 2.0378 21 6 2.2298 -3.6982 0.0559 22 1 -0.4851 0.8401 0.0004 23 1 0.9854 -2.2621 2.1540 24 1 -0.5347 -2.1632 1.2109 25 1 -0.7159 -4.4843 1.0337 26 1 0.3084 -4.4755 2.4967 27 1 3.1785 -5.6759 1.2400 28 1 1.2319 -7.3299 0.7118 29 1 0.8124 -6.3058 3.5177 30 1 -0.3702 -7.0280 2.3820 31 1 0.3874 -9.2698 2.8467 32 1 0.5090 -8.4997 4.4631 33 1 2.6927 -9.6870 3.4184 34 1 2.8709 -8.0927 4.2135 35 1 2.9035 -8.7821 1.2779 36 1 3.7521 -7.4684 2.1403 37 1 2.5733 -3.9578 -0.9455 38 1 3.0764 -3.4694 0.7033 RHF calculation, no. of doubly occupied orbitals= 43 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000307604120.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:00:16 Heat of formation + Delta-G solvation = -45.358979 kcal Electronic energy + Delta-G solvation = -15647.794769 eV Core-core repulsion = 13294.714700 eV Total energy + Delta-G solvation = -2353.080068 eV No. of doubly occupied orbitals = 43 Molecular weight (most abundant/longest-lived isotopes) = 223.163 amu Computer time = 0.28 seconds Orbital eigenvalues (eV) -39.98400 -38.24666 -35.05530 -33.40648 -30.08555 -29.37852 -29.00998 -26.68395 -25.37672 -21.60120 -21.26291 -20.66949 -20.47010 -18.41772 -16.83265 -16.72780 -16.47409 -16.22064 -15.45546 -15.01798 -14.45636 -14.12205 -13.93800 -13.76592 -13.07049 -12.85051 -12.64443 -12.33659 -12.28437 -12.07607 -11.94116 -11.84312 -11.66426 -11.51231 -11.43451 -11.36352 -11.24366 -10.91568 -10.78601 -10.44694 -9.27120 -8.10615 -6.20380 1.40273 1.41781 1.53512 2.44331 3.20136 3.29663 3.70197 3.83449 4.02461 4.10963 4.15476 4.35225 4.54718 4.65245 4.65701 4.74315 4.84673 4.86284 4.88855 4.98956 5.04887 5.12258 5.16879 5.18736 5.22868 5.29596 5.31845 5.37771 5.44693 5.54192 5.56342 5.67449 5.91781 6.01595 6.36360 6.40635 6.62158 6.90457 7.46977 8.98635 Molecular weight = 223.16amu Principal moments of inertia in cm(-1) A = 0.060429 B = 0.005517 C = 0.005324 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 463.239195 B = 5073.839372 C = 5257.627783 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.922 5.922 2 C 0.010 3.990 3 Si 0.954 3.046 4 H -0.266 1.266 5 H -0.280 1.280 6 H -0.281 1.281 7 C -0.530 4.530 8 H 0.053 0.947 9 C 0.040 3.960 10 H -0.002 1.002 11 C -0.091 4.091 12 C -0.104 4.104 13 C 0.096 3.904 14 H 0.039 0.961 15 N -0.679 5.679 16 C 0.078 3.922 17 C -0.116 4.116 18 C -0.120 4.120 19 C -0.117 4.117 20 C -0.123 4.123 21 C -0.108 4.108 22 H 0.259 0.741 23 H 0.028 0.972 24 H 0.034 0.966 25 H 0.047 0.953 26 H 0.068 0.932 27 H 0.343 0.657 28 H 0.038 0.962 29 H 0.061 0.939 30 H 0.053 0.947 31 H 0.072 0.928 32 H 0.071 0.929 33 H 0.078 0.922 34 H 0.062 0.938 35 H 0.073 0.927 36 H 0.069 0.931 37 H 0.051 0.949 38 H 0.061 0.939 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.538 -16.423 4.907 17.502 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.561 5.561 2 C -0.188 4.188 3 Si 0.780 3.220 4 H -0.190 1.190 5 H -0.206 1.206 6 H -0.207 1.207 7 C -0.568 4.568 8 H 0.071 0.929 9 C 0.021 3.979 10 H 0.016 0.984 11 C -0.129 4.129 12 C -0.142 4.142 13 C -0.014 4.014 14 H 0.057 0.943 15 N -0.311 5.311 16 C -0.032 4.032 17 C -0.154 4.154 18 C -0.158 4.158 19 C -0.154 4.154 20 C -0.161 4.161 21 C -0.146 4.146 22 H 0.068 0.932 23 H 0.047 0.953 24 H 0.052 0.948 25 H 0.066 0.934 26 H 0.087 0.913 27 H 0.163 0.837 28 H 0.056 0.944 29 H 0.080 0.920 30 H 0.072 0.928 31 H 0.091 0.909 32 H 0.090 0.910 33 H 0.096 0.904 34 H 0.081 0.919 35 H 0.092 0.908 36 H 0.088 0.912 37 H 0.070 0.930 38 H 0.079 0.921 Dipole moment (debyes) X Y Z Total from point charges 3.096 -16.099 5.464 17.280 hybrid contribution 0.267 1.027 -1.058 1.498 sum 3.363 -15.072 4.406 16.059 Atomic orbital electron populations 1.70106 1.07313 1.27055 1.51653 1.25781 0.95658 1.02489 0.94872 0.85565 0.79161 0.79745 0.77557 1.19007 1.20586 1.20713 1.21552 0.92946 0.92087 1.50254 0.92904 1.19518 0.92951 0.92362 0.93046 0.98425 1.22087 0.98901 0.93692 0.98240 1.22226 0.96619 0.95185 1.00212 1.22079 0.93788 0.93388 0.92097 0.94269 1.60779 1.05645 1.11602 1.53121 1.22348 0.95849 0.87557 0.97461 1.22458 0.97573 0.97903 0.97458 1.22487 0.96353 0.96120 1.00867 1.22279 0.95629 1.00889 0.96648 1.22350 0.97635 0.97887 0.98271 1.22494 0.98361 0.94998 0.98792 0.93170 0.95318 0.94760 0.93395 0.91296 0.83746 0.94366 0.91985 0.92836 0.90930 0.91001 0.90353 0.91901 0.90780 0.91192 0.93003 0.92066 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -55.26 12.23 21.45 0.26 -55.00 16 2 C 0.01 0.59 5.35 84.65 0.45 1.04 16 3 Si 0.95 44.73 29.54 68.60 2.03 46.75 16 4 H -0.27 -12.02 7.11 99.48 0.71 -11.31 16 5 H -0.28 -12.82 7.11 99.48 0.71 -12.11 16 6 H -0.28 -12.95 7.11 99.48 0.71 -12.24 16 7 C -0.53 -30.18 8.51 25.60 0.22 -29.97 16 8 H 0.05 2.95 7.78 -2.91 -0.02 2.92 16 9 C 0.04 2.09 2.76 -10.25 -0.03 2.06 16 10 H 0.00 -0.14 8.14 -2.39 -0.02 -0.16 16 11 C -0.09 -4.50 5.69 31.74 0.18 -4.32 16 12 C -0.10 -4.11 6.11 31.39 0.19 -3.92 16 13 C 0.10 3.44 3.25 45.64 0.15 3.59 16 14 H 0.04 1.36 7.44 -2.39 -0.02 1.34 16 15 N -0.68 -20.26 5.96 -462.07 -2.75 -23.01 16 16 C 0.08 1.92 3.25 45.64 0.15 2.06 16 17 C -0.12 -2.80 5.41 31.67 0.17 -2.63 16 18 C -0.12 -2.20 6.91 31.88 0.22 -1.98 16 19 C -0.12 -2.01 6.83 31.67 0.22 -1.79 16 20 C -0.12 -2.39 6.48 31.32 0.20 -2.18 16 21 C -0.11 -4.52 5.67 31.67 0.18 -4.34 16 22 H 0.26 14.73 8.31 -92.71 -0.77 13.96 16 23 H 0.03 1.48 8.04 -2.39 -0.02 1.46 16 24 H 0.03 1.85 7.51 -2.39 -0.02 1.83 16 25 H 0.05 1.81 8.14 -2.39 -0.02 1.79 16 26 H 0.07 2.59 6.58 -2.39 -0.02 2.57 16 27 H 0.34 9.46 7.59 -89.70 -0.68 8.77 16 28 H 0.04 0.98 7.44 -2.39 -0.02 0.96 16 29 H 0.06 1.72 7.39 -2.39 -0.02 1.70 16 30 H 0.05 1.33 8.14 -2.38 -0.02 1.31 16 31 H 0.07 1.19 8.14 -2.39 -0.02 1.17 16 32 H 0.07 1.21 8.14 -2.38 -0.02 1.19 16 33 H 0.08 1.07 8.14 -2.39 -0.02 1.06 16 34 H 0.06 1.14 8.14 -2.39 -0.02 1.12 16 35 H 0.07 1.24 8.14 -2.38 -0.02 1.22 16 36 H 0.07 1.36 7.47 -2.39 -0.02 1.35 16 37 H 0.05 2.03 8.14 -2.38 -0.02 2.01 16 38 H 0.06 2.57 7.86 -2.39 -0.02 2.55 16 Total: -1.00 -61.34 291.93 2.17 -59.18 By element: Atomic # 1 Polarization: 14.13 SS G_CDS: 0.33 Total: 14.46 kcal Atomic # 6 Polarization: -44.68 SS G_CDS: 2.30 Total: -42.38 kcal Atomic # 7 Polarization: -75.52 SS G_CDS: -2.49 Total: -78.01 kcal Atomic # 14 Polarization: 44.73 SS G_CDS: 2.03 Total: 46.75 kcal Total: -61.34 2.17 -59.18 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000307604120.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 13.817 kcal (2) G-P(sol) polarization free energy of solvation -61.342 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -47.525 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.166 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -59.176 kcal (6) G-S(sol) free energy of system = (1) + (5) -45.359 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.28 seconds