Wall clock time and date at job start Mon Mar 30 2020 03:00:20 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31507 * 1 3 3 Si 1.86804 * 120.00163 * 2 1 4 4 H 1.48495 * 109.47263 * 179.97438 * 3 2 1 5 5 H 1.48494 * 109.47236 * 299.99918 * 3 2 1 6 6 H 1.48503 * 109.46831 * 59.99900 * 3 2 1 7 7 C 1.37880 * 120.00230 * 180.02562 * 2 1 3 8 8 H 1.07993 * 120.00357 * 180.02562 * 7 2 1 9 9 C 1.50702 * 119.99525 * 359.97438 * 7 2 1 10 10 H 1.09002 * 110.01942 * 300.70368 * 9 7 2 11 11 C 1.53873 * 110.03212 * 62.09442 * 9 7 2 12 12 C 1.54269 * 106.59646 * 119.33134 * 11 9 7 13 13 C 1.54882 * 104.19831 * 23.61137 * 12 11 9 14 14 H 1.08994 * 110.75597 * 80.55637 * 13 12 11 15 15 N 1.46903 * 110.75856 * 203.74397 * 13 12 11 16 16 C 1.46905 * 110.99894 * 273.54819 * 15 13 12 17 17 C 1.54264 * 110.02561 * 272.16491 * 16 15 13 18 18 C 1.54894 * 104.19174 * 217.10378 * 17 16 15 19 19 C 1.54890 * 102.74868 * 37.94324 * 18 17 16 20 20 C 1.53872 * 110.03233 * 154.99920 * 16 15 13 21 21 C 1.54273 * 110.07145 * 179.28314 * 9 7 2 22 22 H 0.97004 * 120.00131 * 0.02562 * 1 2 3 23 23 H 1.08996 * 110.03511 * 238.61372 * 11 9 7 24 24 H 1.09002 * 110.03347 * 0.04447 * 11 9 7 25 25 H 1.09000 * 110.48429 * 142.29450 * 12 11 9 26 26 H 1.08998 * 110.48673 * 264.79629 * 12 11 9 27 27 H 1.00901 * 110.99662 * 37.49705 * 15 13 12 28 28 H 1.09001 * 110.01288 * 33.60400 * 16 15 13 29 29 H 1.08997 * 110.49040 * 335.77901 * 17 16 15 30 30 H 1.08997 * 110.48601 * 98.43174 * 17 16 15 31 31 H 1.08999 * 110.75662 * 279.62970 * 18 17 16 32 32 H 1.08998 * 110.91403 * 156.32897 * 18 17 16 33 33 H 1.08998 * 110.48522 * 203.37704 * 19 18 17 34 34 H 1.08999 * 110.48234 * 80.73453 * 19 18 17 35 35 H 1.09002 * 110.02956 * 238.56870 * 20 16 15 36 36 H 1.08999 * 110.03137 * 359.97438 * 20 16 15 37 37 H 1.09001 * 110.48533 * 335.76640 * 21 9 7 38 38 H 1.08999 * 110.48202 * 98.40567 * 21 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 3.7091 1.3464 0.0006 5 1 1.8905 2.3964 -1.2124 6 1 1.8903 2.3964 1.2125 7 6 2.0045 -1.1940 -0.0005 8 1 3.0844 -1.1941 -0.0001 9 6 1.2510 -2.4991 -0.0005 10 1 0.6118 -2.5610 0.8803 11 6 0.4010 -2.6170 -1.2778 12 6 0.9041 -3.8675 -2.0281 13 6 1.5559 -4.7364 -0.9240 14 1 0.7978 -5.2904 -0.3705 15 7 2.5496 -5.6519 -1.5006 16 6 1.9164 -6.8968 -1.9561 17 6 1.8563 -7.9135 -0.7975 18 6 2.1199 -9.2801 -1.4774 19 6 3.1893 -8.9315 -2.5423 20 6 2.7640 -7.5440 -3.0654 21 6 2.2410 -3.6821 -0.0193 22 1 -0.4850 0.8401 -0.0004 23 1 -0.6506 -2.7361 -1.0169 24 1 0.5341 -1.7306 -1.8980 25 1 0.0702 -4.3976 -2.4881 26 1 1.6406 -3.5894 -2.7820 27 1 3.0568 -5.2084 -2.2517 28 1 0.9119 -6.6909 -2.3257 29 1 2.6302 -7.6985 -0.0607 30 1 0.8710 -7.9031 -0.3315 31 1 1.2131 -9.6578 -1.9499 32 1 2.5099 -10.0026 -0.7605 33 1 3.1768 -9.6638 -3.3495 34 1 4.1784 -8.8808 -2.0871 35 1 2.1705 -7.6530 -3.9732 36 1 3.6448 -6.9341 -3.2661 37 1 3.1951 -3.3744 -0.4472 38 1 2.3826 -4.0770 0.9867 RHF calculation, no. of doubly occupied orbitals= 43 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000307604122.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:00:20 Heat of formation + Delta-G solvation = -32.003767 kcal Electronic energy + Delta-G solvation = -15591.281298 eV Core-core repulsion = 13238.780355 eV Total energy + Delta-G solvation = -2352.500943 eV No. of doubly occupied orbitals = 43 Molecular weight (most abundant/longest-lived isotopes) = 223.163 amu Computer time = 0.26 seconds Orbital eigenvalues (eV) -38.71586 -36.91799 -33.39995 -31.63335 -28.69836 -27.99530 -27.53761 -25.26830 -23.35271 -20.79980 -19.84140 -19.53359 -18.74359 -16.31920 -15.78279 -15.49377 -14.63992 -14.49418 -13.98989 -13.89234 -13.27674 -12.41634 -12.38710 -11.96836 -11.53425 -11.28766 -11.11187 -11.01679 -10.97731 -10.85168 -10.61403 -10.55832 -10.49108 -10.39058 -10.09090 -9.77308 -9.54196 -9.07855 -8.61745 -8.31903 -7.85995 -5.95094 -3.97536 3.32571 3.40666 3.44953 4.46410 4.54165 4.61628 4.70957 4.99953 5.36458 5.43006 5.50793 5.57878 5.66187 5.68307 5.70895 5.81065 5.87953 5.93871 5.99710 6.06714 6.17754 6.23980 6.35854 6.48005 6.56808 6.72656 6.81287 6.90502 7.11845 7.23869 7.44434 7.62708 7.79384 7.83964 7.99699 8.07190 8.55542 9.06793 9.66052 11.14302 Molecular weight = 223.16amu Principal moments of inertia in cm(-1) A = 0.063877 B = 0.005340 C = 0.005269 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 438.234575 B = 5242.038165 C = 5312.767113 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.891 5.891 2 C 0.059 3.941 3 Si 0.887 3.113 4 H -0.273 1.273 5 H -0.286 1.286 6 H -0.285 1.285 7 C -0.508 4.508 8 H 0.055 0.945 9 C 0.042 3.958 10 H 0.025 0.975 11 C -0.088 4.088 12 C -0.152 4.152 13 C 0.080 3.920 14 H 0.072 0.928 15 N -0.678 5.678 16 C 0.081 3.919 17 C -0.114 4.114 18 C -0.125 4.125 19 C -0.119 4.119 20 C -0.127 4.127 21 C -0.098 4.098 22 H 0.258 0.742 23 H 0.035 0.965 24 H 0.061 0.939 25 H 0.039 0.961 26 H 0.053 0.947 27 H 0.337 0.663 28 H 0.043 0.957 29 H 0.078 0.922 30 H 0.058 0.942 31 H 0.061 0.939 32 H 0.063 0.937 33 H 0.059 0.941 34 H 0.066 0.934 35 H 0.060 0.940 36 H 0.069 0.931 37 H 0.058 0.942 38 H 0.044 0.956 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.210 -14.835 -4.974 15.972 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.530 5.530 2 C -0.142 4.142 3 Si 0.715 3.285 4 H -0.198 1.198 5 H -0.212 1.212 6 H -0.211 1.211 7 C -0.546 4.546 8 H 0.073 0.927 9 C 0.023 3.977 10 H 0.043 0.957 11 C -0.126 4.126 12 C -0.191 4.191 13 C -0.029 4.029 14 H 0.090 0.910 15 N -0.308 5.308 16 C -0.029 4.029 17 C -0.152 4.152 18 C -0.163 4.163 19 C -0.157 4.157 20 C -0.165 4.165 21 C -0.137 4.137 22 H 0.067 0.933 23 H 0.054 0.946 24 H 0.080 0.920 25 H 0.058 0.942 26 H 0.072 0.928 27 H 0.156 0.844 28 H 0.061 0.939 29 H 0.096 0.904 30 H 0.076 0.924 31 H 0.080 0.920 32 H 0.082 0.918 33 H 0.078 0.922 34 H 0.085 0.915 35 H 0.079 0.921 36 H 0.088 0.912 37 H 0.077 0.923 38 H 0.063 0.937 Dipole moment (debyes) X Y Z Total from point charges 3.252 -14.968 -4.366 15.927 hybrid contribution -0.178 1.371 -0.888 1.644 sum 3.074 -13.597 -5.255 14.897 Atomic orbital electron populations 1.69998 1.05863 1.26172 1.50961 1.24992 0.94815 0.98974 0.95427 0.86616 0.80246 0.84153 0.77472 1.19796 1.21182 1.21124 1.21320 0.92784 0.90525 1.50017 0.92667 1.19268 0.92613 0.92026 0.93764 0.95684 1.21973 0.97870 0.94453 0.98352 1.23088 0.99182 0.98817 0.98043 1.22707 0.92603 0.92046 0.95566 0.90974 1.60811 1.27458 1.05602 1.36933 1.22143 0.96047 0.90920 0.93805 1.22433 1.01679 0.93223 0.97895 1.22484 0.98579 0.97364 0.97863 1.22280 0.99081 0.96207 0.98141 1.22354 0.99777 0.96715 0.97635 1.22413 0.99495 0.94849 0.96900 0.93262 0.94583 0.91984 0.94193 0.92827 0.84375 0.93881 0.90360 0.92365 0.91981 0.91819 0.92224 0.91542 0.92122 0.91225 0.92349 0.93693 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -26.04 12.38 55.43 0.69 -25.35 16 2 C 0.06 1.66 5.08 -17.82 -0.09 1.57 16 3 Si 0.89 21.57 29.54 -169.99 -5.02 16.55 16 4 H -0.27 -6.55 7.11 56.52 0.40 -6.15 16 5 H -0.29 -6.90 7.11 56.52 0.40 -6.50 16 6 H -0.29 -6.90 7.11 56.52 0.40 -6.50 16 7 C -0.51 -14.15 8.33 -34.44 -0.29 -14.44 16 8 H 0.06 1.53 7.55 -52.49 -0.40 1.13 16 9 C 0.04 1.07 2.83 -90.65 -0.26 0.81 16 10 H 0.02 0.69 8.14 -51.93 -0.42 0.27 16 11 C -0.09 -2.09 5.58 -25.61 -0.14 -2.23 16 12 C -0.15 -2.93 6.29 -25.07 -0.16 -3.09 16 13 C 0.08 1.46 3.00 -65.72 -0.20 1.27 16 14 H 0.07 1.33 7.88 -51.93 -0.41 0.92 16 15 N -0.68 -10.53 6.12 -96.50 -0.59 -11.12 16 16 C 0.08 1.08 3.10 -66.59 -0.21 0.87 16 17 C -0.11 -1.42 6.43 -25.07 -0.16 -1.58 16 18 C -0.12 -1.27 6.91 -24.73 -0.17 -1.44 16 19 C -0.12 -1.18 6.83 -25.07 -0.17 -1.36 16 20 C -0.13 -1.42 6.48 -25.62 -0.17 -1.58 16 21 C -0.10 -2.10 6.03 -25.07 -0.15 -2.25 16 22 H 0.26 7.18 8.31 -40.82 -0.34 6.84 16 23 H 0.04 0.87 8.14 -51.93 -0.42 0.45 16 24 H 0.06 1.63 7.21 -51.93 -0.37 1.26 16 25 H 0.04 0.71 8.14 -51.93 -0.42 0.29 16 26 H 0.05 1.01 7.82 -51.93 -0.41 0.60 16 27 H 0.34 5.09 7.58 -39.29 -0.30 4.79 16 28 H 0.04 0.61 7.78 -51.93 -0.40 0.21 16 29 H 0.08 1.06 8.05 -51.93 -0.42 0.64 16 30 H 0.06 0.72 8.14 -51.93 -0.42 0.30 16 31 H 0.06 0.59 8.14 -51.93 -0.42 0.17 16 32 H 0.06 0.59 8.14 -51.93 -0.42 0.16 16 33 H 0.06 0.51 8.14 -51.93 -0.42 0.09 16 34 H 0.07 0.66 8.14 -51.93 -0.42 0.24 16 35 H 0.06 0.63 8.14 -51.93 -0.42 0.21 16 36 H 0.07 0.78 7.47 -51.93 -0.39 0.39 16 37 H 0.06 1.27 7.68 -51.93 -0.40 0.87 16 38 H 0.04 0.93 8.14 -51.93 -0.42 0.51 16 LS Contribution 295.01 15.07 4.45 4.45 Total: -1.00 -28.23 295.01 -9.49 -37.72 By element: Atomic # 1 Polarization: 8.05 SS G_CDS: -6.86 Total: 1.19 kcal Atomic # 6 Polarization: -21.28 SS G_CDS: -2.16 Total: -23.44 kcal Atomic # 7 Polarization: -36.57 SS G_CDS: 0.10 Total: -36.47 kcal Atomic # 14 Polarization: 21.57 SS G_CDS: -5.02 Total: 16.55 kcal Total LS contribution 4.45 Total: 4.45 kcal Total: -28.23 -9.49 -37.72 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000307604122.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 5.716 kcal (2) G-P(sol) polarization free energy of solvation -28.226 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -22.510 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.494 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.720 kcal (6) G-S(sol) free energy of system = (1) + (5) -32.004 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.26 seconds