Wall clock time and date at job start Mon Mar 30 2020 03:00:20 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31507 * 1 3 3 Si 1.86804 * 120.00163 * 2 1 4 4 H 1.48495 * 109.47263 * 179.97438 * 3 2 1 5 5 H 1.48494 * 109.47236 * 299.99918 * 3 2 1 6 6 H 1.48503 * 109.46831 * 59.99900 * 3 2 1 7 7 C 1.37880 * 120.00230 * 180.02562 * 2 1 3 8 8 H 1.07993 * 120.00357 * 180.02562 * 7 2 1 9 9 C 1.50702 * 119.99525 * 359.97438 * 7 2 1 10 10 H 1.09002 * 110.01942 * 300.70368 * 9 7 2 11 11 C 1.53873 * 110.03212 * 62.09442 * 9 7 2 12 12 C 1.54269 * 106.59646 * 119.33134 * 11 9 7 13 13 C 1.54882 * 104.19831 * 23.61137 * 12 11 9 14 14 H 1.08994 * 110.75597 * 80.55637 * 13 12 11 15 15 N 1.46903 * 110.75856 * 203.74397 * 13 12 11 16 16 C 1.46905 * 110.99894 * 273.54819 * 15 13 12 17 17 C 1.54264 * 110.02561 * 272.16491 * 16 15 13 18 18 C 1.54894 * 104.19174 * 217.10378 * 17 16 15 19 19 C 1.54890 * 102.74868 * 37.94324 * 18 17 16 20 20 C 1.53872 * 110.03233 * 154.99920 * 16 15 13 21 21 C 1.54273 * 110.07145 * 179.28314 * 9 7 2 22 22 H 0.97004 * 120.00131 * 0.02562 * 1 2 3 23 23 H 1.08996 * 110.03511 * 238.61372 * 11 9 7 24 24 H 1.09002 * 110.03347 * 0.04447 * 11 9 7 25 25 H 1.09000 * 110.48429 * 142.29450 * 12 11 9 26 26 H 1.08998 * 110.48673 * 264.79629 * 12 11 9 27 27 H 1.00901 * 110.99662 * 37.49705 * 15 13 12 28 28 H 1.09001 * 110.01288 * 33.60400 * 16 15 13 29 29 H 1.08997 * 110.49040 * 335.77901 * 17 16 15 30 30 H 1.08997 * 110.48601 * 98.43174 * 17 16 15 31 31 H 1.08999 * 110.75662 * 279.62970 * 18 17 16 32 32 H 1.08998 * 110.91403 * 156.32897 * 18 17 16 33 33 H 1.08998 * 110.48522 * 203.37704 * 19 18 17 34 34 H 1.08999 * 110.48234 * 80.73453 * 19 18 17 35 35 H 1.09002 * 110.02956 * 238.56870 * 20 16 15 36 36 H 1.08999 * 110.03137 * 359.97438 * 20 16 15 37 37 H 1.09001 * 110.48533 * 335.76640 * 21 9 7 38 38 H 1.08999 * 110.48202 * 98.40567 * 21 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 3.7091 1.3464 0.0006 5 1 1.8905 2.3964 -1.2124 6 1 1.8903 2.3964 1.2125 7 6 2.0045 -1.1940 -0.0005 8 1 3.0844 -1.1941 -0.0001 9 6 1.2510 -2.4991 -0.0005 10 1 0.6118 -2.5610 0.8803 11 6 0.4010 -2.6170 -1.2778 12 6 0.9041 -3.8675 -2.0281 13 6 1.5559 -4.7364 -0.9240 14 1 0.7978 -5.2904 -0.3705 15 7 2.5496 -5.6519 -1.5006 16 6 1.9164 -6.8968 -1.9561 17 6 1.8563 -7.9135 -0.7975 18 6 2.1199 -9.2801 -1.4774 19 6 3.1893 -8.9315 -2.5423 20 6 2.7640 -7.5440 -3.0654 21 6 2.2410 -3.6821 -0.0193 22 1 -0.4850 0.8401 -0.0004 23 1 -0.6506 -2.7361 -1.0169 24 1 0.5341 -1.7306 -1.8980 25 1 0.0702 -4.3976 -2.4881 26 1 1.6406 -3.5894 -2.7820 27 1 3.0568 -5.2084 -2.2517 28 1 0.9119 -6.6909 -2.3257 29 1 2.6302 -7.6985 -0.0607 30 1 0.8710 -7.9031 -0.3315 31 1 1.2131 -9.6578 -1.9499 32 1 2.5099 -10.0026 -0.7605 33 1 3.1768 -9.6638 -3.3495 34 1 4.1784 -8.8808 -2.0871 35 1 2.1705 -7.6530 -3.9732 36 1 3.6448 -6.9341 -3.2661 37 1 3.1951 -3.3744 -0.4472 38 1 2.3826 -4.0770 0.9867 RHF calculation, no. of doubly occupied orbitals= 43 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000307604122.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:00:20 Heat of formation + Delta-G solvation = -47.773609 kcal Electronic energy + Delta-G solvation = -15591.965129 eV Core-core repulsion = 13238.780355 eV Total energy + Delta-G solvation = -2353.184774 eV No. of doubly occupied orbitals = 43 Molecular weight (most abundant/longest-lived isotopes) = 223.163 amu Computer time = 0.28 seconds Orbital eigenvalues (eV) -39.96638 -38.35040 -35.10547 -33.36422 -29.83637 -29.60070 -28.95013 -26.80558 -25.18971 -21.79804 -21.05032 -20.95962 -20.49231 -18.29216 -17.06106 -16.69708 -16.51935 -15.81461 -15.54732 -15.11695 -14.31645 -14.14011 -14.05953 -13.56160 -13.07645 -12.85728 -12.77146 -12.50071 -12.25824 -11.95879 -11.89222 -11.86163 -11.73481 -11.68360 -11.51548 -11.41474 -11.36758 -10.94300 -10.71358 -10.46297 -9.17368 -8.11620 -6.21455 1.39360 1.41052 1.52878 2.43537 3.18679 3.29826 3.71663 3.82182 4.01991 4.09928 4.15543 4.28855 4.53630 4.63452 4.65970 4.71308 4.84912 4.87454 4.88580 4.99291 5.01980 5.06051 5.12184 5.16243 5.24396 5.24914 5.32485 5.36575 5.46224 5.53330 5.56721 5.67282 5.94355 5.96362 6.30300 6.42670 6.60853 6.91366 7.45990 8.97529 Molecular weight = 223.16amu Principal moments of inertia in cm(-1) A = 0.063877 B = 0.005340 C = 0.005269 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 438.234575 B = 5242.038165 C = 5312.767113 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.922 5.922 2 C 0.009 3.991 3 Si 0.953 3.047 4 H -0.266 1.266 5 H -0.280 1.280 6 H -0.281 1.281 7 C -0.527 4.527 8 H 0.053 0.947 9 C 0.033 3.967 10 H -0.009 1.009 11 C -0.080 4.080 12 C -0.139 4.139 13 C 0.098 3.902 14 H 0.073 0.927 15 N -0.676 5.676 16 C 0.077 3.923 17 C -0.117 4.117 18 C -0.120 4.120 19 C -0.117 4.117 20 C -0.124 4.124 21 C -0.090 4.090 22 H 0.259 0.741 23 H 0.020 0.980 24 H 0.030 0.970 25 H 0.059 0.941 26 H 0.061 0.939 27 H 0.342 0.658 28 H 0.038 0.962 29 H 0.064 0.936 30 H 0.054 0.946 31 H 0.071 0.929 32 H 0.073 0.927 33 H 0.077 0.923 34 H 0.064 0.936 35 H 0.071 0.929 36 H 0.069 0.931 37 H 0.054 0.946 38 H 0.046 0.954 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.213 -16.130 -6.011 17.721 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.562 5.562 2 C -0.189 4.189 3 Si 0.779 3.221 4 H -0.190 1.190 5 H -0.206 1.206 6 H -0.207 1.207 7 C -0.565 4.565 8 H 0.071 0.929 9 C 0.014 3.986 10 H 0.009 0.991 11 C -0.119 4.119 12 C -0.178 4.178 13 C -0.012 4.012 14 H 0.091 0.909 15 N -0.307 5.307 16 C -0.033 4.033 17 C -0.155 4.155 18 C -0.157 4.157 19 C -0.154 4.154 20 C -0.162 4.162 21 C -0.128 4.128 22 H 0.068 0.932 23 H 0.039 0.961 24 H 0.049 0.951 25 H 0.078 0.922 26 H 0.080 0.920 27 H 0.161 0.839 28 H 0.056 0.944 29 H 0.083 0.917 30 H 0.073 0.927 31 H 0.089 0.911 32 H 0.092 0.908 33 H 0.096 0.904 34 H 0.083 0.917 35 H 0.090 0.910 36 H 0.088 0.912 37 H 0.073 0.927 38 H 0.065 0.935 Dipole moment (debyes) X Y Z Total from point charges 4.269 -16.282 -5.408 17.680 hybrid contribution -0.513 1.766 -0.531 1.914 sum 3.756 -14.516 -5.939 16.127 Atomic orbital electron populations 1.70121 1.07314 1.27050 1.51690 1.25781 0.95647 1.02483 0.95032 0.85576 0.79193 0.79782 0.77556 1.18999 1.20636 1.20699 1.21661 0.92884 0.91950 1.50014 0.92916 1.19280 0.93154 0.93093 0.93025 0.99118 1.21764 0.96915 0.95507 0.97719 1.22973 1.00009 0.96763 0.98050 1.22392 0.92604 0.91635 0.94586 0.90895 1.60751 1.26657 1.05708 1.37544 1.22270 0.96067 0.89966 0.94978 1.22435 1.01034 0.94566 0.97485 1.22470 0.99166 0.96103 0.97993 1.22283 0.98792 0.95808 0.98536 1.22343 0.99500 0.97217 0.97172 1.22241 0.98346 0.94333 0.97902 0.93195 0.96074 0.95084 0.92189 0.92019 0.83878 0.94412 0.91715 0.92728 0.91077 0.90785 0.90442 0.91703 0.91028 0.91250 0.92742 0.93549 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -55.14 12.38 21.45 0.27 -54.88 16 2 C 0.01 0.50 5.08 84.66 0.43 0.93 16 3 Si 0.95 44.61 29.54 68.60 2.03 46.63 16 4 H -0.27 -12.01 7.11 99.48 0.71 -11.30 16 5 H -0.28 -12.83 7.11 99.48 0.71 -12.12 16 6 H -0.28 -12.91 7.11 99.48 0.71 -12.20 16 7 C -0.53 -29.91 8.33 25.60 0.21 -29.69 16 8 H 0.05 2.94 7.55 -2.91 -0.02 2.92 16 9 C 0.03 1.74 2.83 -10.81 -0.03 1.71 16 10 H -0.01 -0.55 8.14 -2.39 -0.02 -0.56 16 11 C -0.08 -3.90 5.58 31.32 0.17 -3.73 16 12 C -0.14 -5.20 6.29 31.67 0.20 -5.00 16 13 C 0.10 3.48 3.00 46.20 0.14 3.62 16 14 H 0.07 2.60 7.88 -2.39 -0.02 2.58 16 15 N -0.68 -19.81 6.12 -459.21 -2.81 -22.62 16 16 C 0.08 1.88 3.10 45.64 0.14 2.02 16 17 C -0.12 -2.69 6.43 31.67 0.20 -2.49 16 18 C -0.12 -2.09 6.91 31.89 0.22 -1.87 16 19 C -0.12 -1.95 6.83 31.67 0.22 -1.73 16 20 C -0.12 -2.42 6.48 31.32 0.20 -2.22 16 21 C -0.09 -3.84 6.03 31.67 0.19 -3.65 16 22 H 0.26 14.70 8.31 -92.71 -0.77 13.93 16 23 H 0.02 1.04 8.14 -2.39 -0.02 1.02 16 24 H 0.03 1.66 7.21 -2.39 -0.02 1.64 16 25 H 0.06 2.03 8.14 -2.39 -0.02 2.01 16 26 H 0.06 2.22 7.82 -2.39 -0.02 2.20 16 27 H 0.34 9.60 7.58 -89.69 -0.68 8.92 16 28 H 0.04 0.98 7.78 -2.39 -0.02 0.96 16 29 H 0.06 1.67 8.05 -2.39 -0.02 1.65 16 30 H 0.05 1.28 8.14 -2.39 -0.02 1.26 16 31 H 0.07 1.13 8.14 -2.39 -0.02 1.11 16 32 H 0.07 1.15 8.14 -2.39 -0.02 1.13 16 33 H 0.08 1.05 8.14 -2.39 -0.02 1.03 16 34 H 0.06 1.11 8.14 -2.39 -0.02 1.10 16 35 H 0.07 1.25 8.14 -2.39 -0.02 1.23 16 36 H 0.07 1.37 7.47 -2.39 -0.02 1.35 16 37 H 0.05 2.35 7.68 -2.39 -0.02 2.33 16 38 H 0.05 1.93 8.14 -2.39 -0.02 1.91 16 Total: -1.00 -60.99 295.01 2.11 -58.88 By element: Atomic # 1 Polarization: 13.77 SS G_CDS: 0.33 Total: 14.09 kcal Atomic # 6 Polarization: -44.40 SS G_CDS: 2.30 Total: -42.10 kcal Atomic # 7 Polarization: -74.95 SS G_CDS: -2.55 Total: -77.50 kcal Atomic # 14 Polarization: 44.61 SS G_CDS: 2.03 Total: 46.63 kcal Total: -60.99 2.11 -58.88 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000307604122.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 11.106 kcal (2) G-P(sol) polarization free energy of solvation -60.986 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -49.880 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.106 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -58.880 kcal (6) G-S(sol) free energy of system = (1) + (5) -47.774 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.28 seconds