Wall clock time and date at job start Mon Mar 30 2020 02:46:44 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46501 * 1 3 3 C 1.36938 * 119.99916 * 2 1 4 4 H 1.07999 * 119.99688 * 203.04220 * 3 2 1 5 5 C 1.38815 * 120.00192 * 23.05231 * 3 2 1 6 6 N 1.31617 * 119.99358 * 12.93330 * 5 3 2 7 7 Si 1.86794 * 120.00088 * 192.93545 * 5 3 2 8 8 H 1.48504 * 109.47167 * 359.97438 * 7 5 3 9 9 H 1.48498 * 109.47075 * 119.99998 * 7 5 3 10 10 H 1.48507 * 109.46917 * 240.00102 * 7 5 3 11 11 C 1.46499 * 119.99885 * 180.02562 * 2 1 3 12 12 C 1.53001 * 109.47464 * 89.99635 * 11 2 1 13 13 C 1.52994 * 109.47183 * 179.97438 * 12 11 2 14 14 C 1.50702 * 109.47197 * 180.02562 * 13 12 11 15 15 C 1.39865 * 126.04421 * 90.02464 * 14 13 12 16 16 N 1.30833 * 108.20509 * 179.97438 * 15 14 13 17 17 N 1.40079 * 108.20616 * 359.97438 * 16 15 14 18 18 C 1.46497 * 126.04152 * 180.02562 * 17 16 15 19 19 C 1.34950 * 107.92676 * 359.75812 * 17 16 15 20 20 H 1.08999 * 109.46864 * 275.12222 * 1 2 3 21 21 H 1.08997 * 109.46917 * 35.11522 * 1 2 3 22 22 H 1.08993 * 109.47072 * 155.12180 * 1 2 3 23 23 H 0.97003 * 119.99325 * 180.02562 * 6 5 3 24 24 H 1.09001 * 109.47062 * 329.99014 * 11 2 1 25 25 H 1.09005 * 109.46961 * 209.99936 * 11 2 1 26 26 H 1.09001 * 109.46752 * 59.99746 * 12 11 2 27 27 H 1.08997 * 109.46683 * 300.00262 * 12 11 2 28 28 H 1.09005 * 109.47149 * 300.00244 * 13 12 11 29 29 H 1.09001 * 109.47436 * 60.00223 * 13 12 11 30 30 H 1.08000 * 125.89805 * 359.97438 * 15 14 13 31 31 H 1.09000 * 109.47562 * 89.97301 * 18 17 16 32 32 H 1.09001 * 109.47810 * 209.97536 * 18 17 16 33 33 H 1.08998 * 109.47075 * 329.97473 * 18 17 16 34 34 H 1.08005 * 126.13157 * 180.24358 * 19 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1497 1.1859 0.0000 4 1 3.1650 1.2232 -0.3661 5 6 1.5388 2.3401 0.4707 6 7 0.4120 2.2596 1.1461 7 14 2.3158 4.0074 0.1455 8 1 3.5698 3.8264 -0.6291 9 1 1.3714 4.8507 -0.6304 10 1 2.6243 4.6703 1.4382 11 6 2.1975 -1.2687 -0.0006 12 6 2.4524 -1.7099 -1.4432 13 6 3.2179 -3.0345 -1.4438 14 6 3.4696 -3.4688 -2.8647 15 6 4.5864 -3.1404 -3.6401 16 7 4.4476 -3.7001 -4.8145 17 7 3.2364 -4.4039 -4.8234 18 6 2.6960 -5.1751 -5.9456 19 6 2.6582 -4.2509 -3.6137 20 1 -0.3633 0.0918 1.0236 21 1 -0.3633 0.8406 -0.5911 22 1 -0.3633 -0.9322 -0.4323 23 1 -0.0151 3.0661 1.4748 24 1 1.6084 -2.0286 0.5131 25 1 3.1499 -1.1386 0.5133 26 1 3.0415 -0.9500 -1.9568 27 1 1.5000 -1.8399 -1.9570 28 1 4.1704 -2.9040 -0.9300 29 1 2.6293 -3.7946 -0.9301 30 1 5.4196 -2.5303 -3.3239 31 1 3.0471 -6.2050 -5.8814 32 1 1.6068 -5.1595 -5.9062 33 1 3.0319 -4.7346 -6.8844 34 1 1.7153 -4.6744 -3.3005 RHF calculation, no. of doubly occupied orbitals= 42 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000308432601.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:46:44 Heat of formation + Delta-G solvation = 91.690044 kcal Electronic energy + Delta-G solvation = -14780.288912 eV Core-core repulsion = 12329.611392 eV Total energy + Delta-G solvation = -2450.677520 eV No. of doubly occupied orbitals = 42 Molecular weight (most abundant/longest-lived isotopes) = 223.138 amu Computer time = 0.28 seconds Orbital eigenvalues (eV) -41.06939 -36.03825 -34.05473 -32.63378 -30.98544 -29.22125 -27.10162 -25.77436 -24.80347 -22.09406 -21.00356 -20.11503 -19.82602 -16.79028 -16.47841 -15.41634 -14.81139 -14.49158 -14.22641 -13.65680 -13.28091 -13.07176 -12.98749 -12.58644 -12.43083 -12.07911 -11.54293 -11.16581 -10.78099 -10.75291 -10.65556 -10.32951 -10.30462 -9.99802 -9.76354 -9.61270 -9.33861 -8.48027 -8.17441 -6.60515 -5.62383 -3.08302 1.95910 2.57076 2.94816 3.43494 3.50532 3.53091 4.50134 4.58913 4.90366 4.97757 5.15600 5.22473 5.43099 5.51720 5.59598 5.66161 5.91893 6.04764 6.12806 6.30543 6.44395 6.58264 6.65465 6.78675 6.85421 7.02177 7.08927 7.19406 7.47973 7.77316 7.81909 7.90276 8.51051 9.34776 9.99468 10.48754 11.42444 Molecular weight = 223.14amu Principal moments of inertia in cm(-1) A = 0.040869 B = 0.005213 C = 0.004968 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 684.954053 B = 5369.926697 C = 5635.152002 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.164 3.836 2 N -0.606 5.606 3 C -0.248 4.248 4 H 0.068 0.932 5 C -0.002 4.002 6 N -0.910 5.910 7 Si 0.902 3.098 8 H -0.278 1.278 9 H -0.291 1.291 10 H -0.291 1.291 11 C 0.151 3.849 12 C -0.130 4.130 13 C -0.041 4.041 14 C -0.219 4.219 15 C 0.052 3.948 16 N -0.305 5.305 17 N -0.384 5.384 18 C 0.105 3.895 19 C 0.047 3.953 20 H 0.029 0.971 21 H 0.038 0.962 22 H -0.004 1.004 23 H 0.250 0.750 24 H 0.032 0.968 25 H 0.045 0.955 26 H 0.058 0.942 27 H 0.049 0.951 28 H 0.066 0.934 29 H 0.061 0.939 30 H 0.182 0.818 31 H 0.070 0.930 32 H 0.085 0.915 33 H 0.085 0.915 34 H 0.171 0.829 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.227 -14.507 -9.601 17.693 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C 0.019 3.981 2 N -0.329 5.329 3 C -0.378 4.378 4 H 0.085 0.915 5 C -0.199 4.199 6 N -0.556 5.556 7 Si 0.732 3.268 8 H -0.203 1.203 9 H -0.217 1.217 10 H -0.218 1.218 11 C 0.024 3.976 12 C -0.170 4.170 13 C -0.080 4.080 14 C -0.230 4.230 15 C -0.134 4.134 16 N -0.127 5.127 17 N -0.167 5.167 18 C -0.037 4.037 19 C -0.098 4.098 20 H 0.047 0.953 21 H 0.056 0.944 22 H 0.015 0.985 23 H 0.060 0.940 24 H 0.051 0.949 25 H 0.063 0.937 26 H 0.077 0.923 27 H 0.068 0.932 28 H 0.085 0.915 29 H 0.080 0.920 30 H 0.199 0.801 31 H 0.089 0.911 32 H 0.103 0.897 33 H 0.104 0.896 34 H 0.188 0.812 Dipole moment (debyes) X Y Z Total from point charges 3.558 -14.629 -10.809 18.533 hybrid contribution -0.142 1.100 0.537 1.232 sum 3.416 -13.528 -10.272 17.326 Atomic orbital electron populations 1.20751 0.82916 0.95168 0.99250 1.43915 1.01784 1.00901 1.86284 1.19247 0.98184 0.85724 1.34657 0.91452 1.25012 0.97991 0.98454 0.98491 1.70086 1.19587 1.26855 1.39093 0.86217 0.78578 0.84546 0.77447 1.20324 1.21742 1.21800 1.20771 0.95819 0.88046 0.92985 1.22237 0.99091 0.94860 1.00849 1.19936 1.00610 0.97621 0.89833 1.20300 0.96875 1.06229 0.99621 1.23830 0.99306 0.99284 0.90954 1.77281 1.00396 1.13205 1.21817 1.48385 1.16483 1.40600 1.11233 1.21770 0.98989 0.94962 0.87965 1.22313 0.99873 1.01532 0.86130 0.95258 0.94359 0.98540 0.93973 0.94915 0.93673 0.92339 0.93246 0.91491 0.92002 0.80136 0.91147 0.89677 0.89584 0.81212 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.16 4.20 8.98 59.85 0.54 4.73 16 2 N -0.61 -15.83 2.92 -181.12 -0.53 -16.36 16 3 C -0.25 -7.05 9.65 -15.06 -0.15 -7.20 16 4 H 0.07 1.87 7.86 -52.49 -0.41 1.46 16 5 C 0.00 -0.05 5.10 -17.43 -0.09 -0.14 16 6 N -0.91 -27.36 10.71 55.49 0.59 -26.77 16 7 Si 0.90 22.43 29.57 -169.99 -5.03 17.41 16 8 H -0.28 -6.74 7.11 56.52 0.40 -6.34 16 9 H -0.29 -7.25 7.11 56.52 0.40 -6.85 16 10 H -0.29 -7.24 7.11 56.52 0.40 -6.84 16 11 C 0.15 3.16 5.64 -4.04 -0.02 3.14 16 12 C -0.13 -2.33 5.52 -26.73 -0.15 -2.48 16 13 C -0.04 -0.58 5.70 -27.89 -0.16 -0.74 16 14 C -0.22 -3.09 5.35 -105.05 -0.56 -3.65 16 15 C 0.05 0.75 11.96 -17.37 -0.21 0.54 16 16 N -0.31 -4.58 12.58 30.62 0.39 -4.20 16 17 N -0.38 -4.84 4.01 -68.16 -0.27 -5.11 16 18 C 0.10 0.81 11.47 59.85 0.69 1.50 16 19 C 0.05 0.58 11.40 -17.22 -0.20 0.39 16 20 H 0.03 0.80 7.34 -51.93 -0.38 0.42 16 21 H 0.04 1.05 7.34 -51.93 -0.38 0.66 16 22 H 0.00 -0.09 8.03 -51.93 -0.42 -0.51 16 23 H 0.25 7.25 8.31 -40.82 -0.34 6.91 16 24 H 0.03 0.64 8.07 -51.93 -0.42 0.22 16 25 H 0.04 0.94 8.04 -51.93 -0.42 0.53 16 26 H 0.06 1.16 8.14 -51.93 -0.42 0.74 16 27 H 0.05 0.92 8.14 -51.93 -0.42 0.50 16 28 H 0.07 0.91 8.14 -51.93 -0.42 0.48 16 29 H 0.06 0.80 8.14 -51.93 -0.42 0.37 16 30 H 0.18 2.20 8.06 -52.49 -0.42 1.78 16 31 H 0.07 0.44 8.14 -51.93 -0.42 0.01 16 32 H 0.08 0.47 8.14 -51.93 -0.42 0.04 16 33 H 0.09 0.63 8.14 -51.93 -0.42 0.21 16 34 H 0.17 1.62 8.06 -52.48 -0.42 1.19 16 LS Contribution 290.01 15.07 4.37 4.37 Total: -1.00 -33.44 290.01 -6.16 -39.59 By element: Atomic # 1 Polarization: 0.35 SS G_CDS: -5.37 Total: -5.02 kcal Atomic # 6 Polarization: -3.60 SS G_CDS: -0.31 Total: -3.91 kcal Atomic # 7 Polarization: -52.62 SS G_CDS: 0.18 Total: -52.44 kcal Atomic # 14 Polarization: 22.43 SS G_CDS: -5.03 Total: 17.41 kcal Total LS contribution 4.37 Total: 4.37 kcal Total: -33.44 -6.16 -39.59 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000308432601.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 131.283 kcal (2) G-P(sol) polarization free energy of solvation -33.438 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 97.845 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.155 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.593 kcal (6) G-S(sol) free energy of system = (1) + (5) 91.690 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.29 seconds