Wall clock time and date at job start Mon Mar 30 2020 02:46:44 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46501 * 1 3 3 C 1.36938 * 119.99916 * 2 1 4 4 H 1.07999 * 119.99688 * 203.04220 * 3 2 1 5 5 C 1.38815 * 120.00192 * 23.05231 * 3 2 1 6 6 N 1.31617 * 119.99358 * 12.93330 * 5 3 2 7 7 Si 1.86794 * 120.00088 * 192.93545 * 5 3 2 8 8 H 1.48504 * 109.47167 * 359.97438 * 7 5 3 9 9 H 1.48498 * 109.47075 * 119.99998 * 7 5 3 10 10 H 1.48507 * 109.46917 * 240.00102 * 7 5 3 11 11 C 1.46499 * 119.99885 * 180.02562 * 2 1 3 12 12 C 1.53001 * 109.47464 * 89.99635 * 11 2 1 13 13 C 1.52994 * 109.47183 * 179.97438 * 12 11 2 14 14 C 1.50702 * 109.47197 * 180.02562 * 13 12 11 15 15 C 1.39865 * 126.04421 * 90.02464 * 14 13 12 16 16 N 1.30833 * 108.20509 * 179.97438 * 15 14 13 17 17 N 1.40079 * 108.20616 * 359.97438 * 16 15 14 18 18 C 1.46497 * 126.04152 * 180.02562 * 17 16 15 19 19 C 1.34950 * 107.92676 * 359.75812 * 17 16 15 20 20 H 1.08999 * 109.46864 * 275.12222 * 1 2 3 21 21 H 1.08997 * 109.46917 * 35.11522 * 1 2 3 22 22 H 1.08993 * 109.47072 * 155.12180 * 1 2 3 23 23 H 0.97003 * 119.99325 * 180.02562 * 6 5 3 24 24 H 1.09001 * 109.47062 * 329.99014 * 11 2 1 25 25 H 1.09005 * 109.46961 * 209.99936 * 11 2 1 26 26 H 1.09001 * 109.46752 * 59.99746 * 12 11 2 27 27 H 1.08997 * 109.46683 * 300.00262 * 12 11 2 28 28 H 1.09005 * 109.47149 * 300.00244 * 13 12 11 29 29 H 1.09001 * 109.47436 * 60.00223 * 13 12 11 30 30 H 1.08000 * 125.89805 * 359.97438 * 15 14 13 31 31 H 1.09000 * 109.47562 * 89.97301 * 18 17 16 32 32 H 1.09001 * 109.47810 * 209.97536 * 18 17 16 33 33 H 1.08998 * 109.47075 * 329.97473 * 18 17 16 34 34 H 1.08005 * 126.13157 * 180.24358 * 19 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1497 1.1859 0.0000 4 1 3.1650 1.2232 -0.3661 5 6 1.5388 2.3401 0.4707 6 7 0.4120 2.2596 1.1461 7 14 2.3158 4.0074 0.1455 8 1 3.5698 3.8264 -0.6291 9 1 1.3714 4.8507 -0.6304 10 1 2.6243 4.6703 1.4382 11 6 2.1975 -1.2687 -0.0006 12 6 2.4524 -1.7099 -1.4432 13 6 3.2179 -3.0345 -1.4438 14 6 3.4696 -3.4688 -2.8647 15 6 4.5864 -3.1404 -3.6401 16 7 4.4476 -3.7001 -4.8145 17 7 3.2364 -4.4039 -4.8234 18 6 2.6960 -5.1751 -5.9456 19 6 2.6582 -4.2509 -3.6137 20 1 -0.3633 0.0918 1.0236 21 1 -0.3633 0.8406 -0.5911 22 1 -0.3633 -0.9322 -0.4323 23 1 -0.0151 3.0661 1.4748 24 1 1.6084 -2.0286 0.5131 25 1 3.1499 -1.1386 0.5133 26 1 3.0415 -0.9500 -1.9568 27 1 1.5000 -1.8399 -1.9570 28 1 4.1704 -2.9040 -0.9300 29 1 2.6293 -3.7946 -0.9301 30 1 5.4196 -2.5303 -3.3239 31 1 3.0471 -6.2050 -5.8814 32 1 1.6068 -5.1595 -5.9062 33 1 3.0319 -4.7346 -6.8844 34 1 1.7153 -4.6744 -3.3005 RHF calculation, no. of doubly occupied orbitals= 42 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000308432601.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:46:44 Heat of formation + Delta-G solvation = 71.022369 kcal Electronic energy + Delta-G solvation = -14781.185130 eV Core-core repulsion = 12329.611392 eV Total energy + Delta-G solvation = -2451.573738 eV No. of doubly occupied orbitals = 42 Molecular weight (most abundant/longest-lived isotopes) = 223.138 amu Computer time = 0.29 seconds Orbital eigenvalues (eV) -42.04394 -37.84671 -35.41254 -33.83840 -32.74524 -30.53110 -28.21099 -27.82809 -26.19240 -23.71504 -21.95422 -21.82182 -20.89701 -18.68377 -17.62728 -16.82136 -16.27215 -15.88102 -15.45081 -15.28507 -14.76101 -14.63348 -14.03450 -13.77588 -13.61871 -13.19300 -13.15715 -12.86346 -12.65386 -12.47410 -12.21261 -12.06909 -12.02316 -11.80578 -11.48513 -11.17426 -10.61413 -10.30976 -9.23993 -8.67878 -7.78974 -5.27671 0.99830 1.46436 1.47566 1.58416 1.76406 1.89562 2.53666 3.33445 3.70736 3.82255 4.06472 4.28789 4.36672 4.45483 4.46387 4.68622 4.70278 4.73047 4.88926 4.90650 5.02451 5.07960 5.18435 5.20278 5.37555 5.60243 5.65417 5.69124 5.73345 5.79709 6.22274 6.37832 6.77666 7.19763 7.93953 8.36946 9.23970 Molecular weight = 223.14amu Principal moments of inertia in cm(-1) A = 0.040869 B = 0.005213 C = 0.004968 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 684.954053 B = 5369.926697 C = 5635.152002 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.178 3.822 2 N -0.625 5.625 3 C -0.258 4.258 4 H 0.068 0.932 5 C -0.057 4.057 6 N -0.942 5.942 7 Si 0.966 3.034 8 H -0.267 1.267 9 H -0.292 1.292 10 H -0.290 1.290 11 C 0.147 3.853 12 C -0.111 4.111 13 C -0.027 4.027 14 C -0.245 4.245 15 C 0.038 3.962 16 N -0.339 5.339 17 N -0.385 5.385 18 C 0.094 3.906 19 C 0.055 3.945 20 H 0.004 0.996 21 H 0.010 0.990 22 H 0.032 0.968 23 H 0.247 0.753 24 H 0.051 0.949 25 H 0.042 0.958 26 H 0.033 0.967 27 H 0.043 0.957 28 H 0.071 0.929 29 H 0.081 0.919 30 H 0.190 0.810 31 H 0.088 0.912 32 H 0.112 0.888 33 H 0.086 0.914 34 H 0.203 0.797 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.332 -15.867 -10.402 19.263 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C 0.032 3.968 2 N -0.349 5.349 3 C -0.388 4.388 4 H 0.086 0.914 5 C -0.251 4.251 6 N -0.589 5.589 7 Si 0.795 3.205 8 H -0.192 1.192 9 H -0.219 1.219 10 H -0.217 1.217 11 C 0.021 3.979 12 C -0.151 4.151 13 C -0.066 4.066 14 C -0.257 4.257 15 C -0.147 4.147 16 N -0.162 5.162 17 N -0.167 5.167 18 C -0.046 4.046 19 C -0.091 4.091 20 H 0.022 0.978 21 H 0.028 0.972 22 H 0.050 0.950 23 H 0.056 0.944 24 H 0.069 0.931 25 H 0.060 0.940 26 H 0.052 0.948 27 H 0.062 0.938 28 H 0.089 0.911 29 H 0.100 0.900 30 H 0.207 0.793 31 H 0.106 0.894 32 H 0.130 0.870 33 H 0.105 0.895 34 H 0.220 0.780 Dipole moment (debyes) X Y Z Total from point charges 3.693 -16.028 -11.640 20.150 hybrid contribution -0.193 1.411 0.735 1.602 sum 3.500 -14.617 -10.905 18.570 Atomic orbital electron populations 1.20504 0.83048 0.95737 0.97468 1.44224 1.02146 1.02089 1.86449 1.19558 0.98353 0.87017 1.33888 0.91415 1.25780 0.98748 1.01835 0.98777 1.70243 1.20957 1.27387 1.40323 0.85212 0.77989 0.80178 0.77168 1.19177 1.21883 1.21700 1.20989 0.95388 0.86433 0.95057 1.21952 0.98937 0.96275 0.97952 1.19758 1.00497 0.95743 0.90568 1.20356 0.97621 1.07901 0.99775 1.24101 1.00021 0.99509 0.91092 1.77219 1.02126 1.14482 1.22331 1.48797 1.15663 1.39978 1.12312 1.22158 1.00584 0.95246 0.86603 1.22835 1.00352 1.00221 0.85723 0.97766 0.97157 0.94953 0.94388 0.93060 0.93959 0.94828 0.93774 0.91057 0.90049 0.79337 0.89373 0.86998 0.89483 0.78010 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.18 9.08 8.98 127.77 1.15 10.22 16 2 N -0.63 -32.50 2.92 -726.94 -2.12 -34.63 16 3 C -0.26 -14.66 9.65 84.03 0.81 -13.85 16 4 H 0.07 3.76 7.86 -2.91 -0.02 3.74 16 5 C -0.06 -3.29 5.10 84.86 0.43 -2.86 16 6 N -0.94 -57.42 10.71 21.65 0.23 -57.18 16 7 Si 0.97 46.40 29.57 68.60 2.03 48.43 16 8 H -0.27 -12.22 7.11 99.48 0.71 -11.52 16 9 H -0.29 -13.99 7.11 99.48 0.71 -13.28 16 10 H -0.29 -13.80 7.11 99.48 0.71 -13.09 16 11 C 0.15 5.95 5.64 86.38 0.49 6.44 16 12 C -0.11 -3.83 5.52 30.59 0.17 -3.66 16 13 C -0.03 -0.69 5.70 29.85 0.17 -0.52 16 14 C -0.25 -6.44 5.35 -20.14 -0.11 -6.55 16 15 C 0.04 1.05 11.96 85.24 1.02 2.07 16 16 N -0.34 -9.83 12.58 -57.03 -0.72 -10.55 16 17 N -0.38 -8.83 4.01 -369.56 -1.48 -10.31 16 18 C 0.09 1.19 11.47 127.77 1.47 2.65 16 19 C 0.06 1.22 11.40 83.54 0.95 2.18 16 20 H 0.00 0.23 7.34 -2.39 -0.02 0.21 16 21 H 0.01 0.54 7.34 -2.39 -0.02 0.52 16 22 H 0.03 1.38 8.03 -2.39 -0.02 1.36 16 23 H 0.25 14.55 8.31 -92.71 -0.77 13.78 16 24 H 0.05 1.89 8.07 -2.39 -0.02 1.87 16 25 H 0.04 1.72 8.04 -2.38 -0.02 1.70 16 26 H 0.03 1.31 8.14 -2.39 -0.02 1.29 16 27 H 0.04 1.55 8.14 -2.39 -0.02 1.54 16 28 H 0.07 1.79 8.14 -2.38 -0.02 1.77 16 29 H 0.08 1.82 8.14 -2.39 -0.02 1.80 16 30 H 0.19 4.57 8.06 -2.91 -0.02 4.55 16 31 H 0.09 0.83 8.14 -2.39 -0.02 0.81 16 32 H 0.11 0.82 8.14 -2.39 -0.02 0.80 16 33 H 0.09 1.09 8.14 -2.39 -0.02 1.07 16 34 H 0.20 2.98 8.06 -2.91 -0.02 2.96 16 Total: -1.00 -71.77 290.01 5.54 -66.23 By element: Atomic # 1 Polarization: 0.84 SS G_CDS: 1.05 Total: 1.89 kcal Atomic # 6 Polarization: -10.43 SS G_CDS: 6.55 Total: -3.88 kcal Atomic # 7 Polarization: -108.58 SS G_CDS: -4.09 Total: -112.67 kcal Atomic # 14 Polarization: 46.40 SS G_CDS: 2.03 Total: 48.43 kcal Total: -71.77 5.54 -66.23 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000308432601.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 137.257 kcal (2) G-P(sol) polarization free energy of solvation -71.770 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 65.487 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.536 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.235 kcal (6) G-S(sol) free energy of system = (1) + (5) 71.022 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.29 seconds