Wall clock time and date at job start Mon Mar 30 2020 02:38:19 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 H 1.09003 * 109.46868 * 2 1 4 4 C 1.50693 * 109.47646 * 120.00245 * 2 1 3 5 5 H 1.08002 * 120.00364 * 119.99785 * 4 2 1 6 6 C 1.37885 * 119.99875 * 300.00471 * 4 2 1 7 7 N 1.31514 * 119.99793 * 359.97438 * 6 4 2 8 8 Si 1.86794 * 120.00348 * 179.97438 * 6 4 2 9 9 H 1.48507 * 109.46809 * 59.99557 * 8 6 4 10 10 H 1.48496 * 109.47537 * 179.97438 * 8 6 4 11 11 H 1.48504 * 109.46866 * 300.00204 * 8 6 4 12 12 N 1.46900 * 109.47367 * 240.00480 * 2 1 3 13 13 C 1.46905 * 111.00350 * 84.99466 * 12 2 1 14 14 H 1.09002 * 109.46900 * 325.00410 * 13 12 2 15 15 C 1.52999 * 109.46913 * 85.00328 * 13 12 2 16 16 C 1.50700 * 109.47353 * 205.00421 * 13 12 2 17 17 C 1.39873 * 126.03825 * 320.02553 * 16 13 12 18 18 N 1.30832 * 108.20166 * 179.97438 * 17 16 13 19 19 N 1.40085 * 108.20599 * 359.97438 * 18 17 16 20 20 C 1.46500 * 126.03813 * 179.74170 * 19 18 17 21 21 C 1.34943 * 107.92716 * 0.02562 * 19 18 17 22 22 H 1.08996 * 109.46988 * 299.99721 * 1 2 3 23 23 H 1.09001 * 109.47002 * 60.00102 * 1 2 3 24 24 H 1.08996 * 109.46548 * 179.97438 * 1 2 3 25 25 H 0.97002 * 119.99911 * 180.02562 * 7 6 4 26 26 H 1.00905 * 110.99852 * 321.04533 * 12 2 1 27 27 H 1.09002 * 109.47270 * 60.00309 * 15 13 12 28 28 H 1.08998 * 109.46961 * 180.02562 * 15 13 12 29 29 H 1.08997 * 109.46831 * 299.99758 * 15 13 12 30 30 H 1.07999 * 125.89561 * 359.95652 * 17 16 13 31 31 H 1.08997 * 109.47763 * 90.01881 * 20 19 18 32 32 H 1.09004 * 109.47211 * 210.02331 * 20 19 18 33 33 H 1.09012 * 109.46942 * 330.02017 * 20 19 18 34 34 H 1.07996 * 126.13000 * 180.02562 * 21 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0325 -0.7104 1.2303 5 1 2.6534 -1.5885 1.1312 6 6 1.6993 -0.2394 2.4827 7 7 0.9435 0.8301 2.6034 8 14 2.3215 -1.1203 4.0079 9 1 3.8065 -1.1208 4.0080 10 1 1.8271 -0.4200 5.2204 11 1 1.8261 -2.5203 4.0076 12 7 2.0197 -0.6924 -1.1995 13 6 2.0825 0.2227 -2.3470 14 1 1.2576 0.9330 -2.2907 15 6 3.4111 0.9810 -2.3224 16 6 1.9786 -0.5674 -3.6260 17 6 2.5846 -1.8017 -3.8822 18 7 2.2635 -2.1706 -5.0957 19 7 1.4413 -1.1815 -5.6507 20 6 0.8623 -1.1971 -6.9963 21 6 1.2818 -0.2087 -4.7291 22 1 -0.3633 0.5138 0.8900 23 1 -0.3633 0.5138 -0.8900 24 1 -0.3632 -1.0277 -0.0005 25 1 0.7095 1.1616 3.4844 26 1 1.4496 -1.4978 -1.4101 27 1 4.2360 0.2707 -2.3787 28 1 3.4574 1.6604 -3.1736 29 1 3.4861 1.5526 -1.3974 30 1 3.2099 -2.3546 -3.1968 31 1 -0.1110 -1.6868 -6.9675 32 1 0.7437 -0.1738 -7.3527 33 1 1.5235 -1.7422 -7.6700 34 1 0.7015 0.6940 -4.8500 RHF calculation, no. of doubly occupied orbitals= 42 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000308449423.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:38:19 Heat of formation + Delta-G solvation = 76.314792 kcal Electronic energy + Delta-G solvation = -15197.009675 eV Core-core repulsion = 12745.665435 eV Total energy + Delta-G solvation = -2451.344241 eV No. of doubly occupied orbitals = 42 Molecular weight (most abundant/longest-lived isotopes) = 223.138 amu Computer time = 0.24 seconds Orbital eigenvalues (eV) -40.98065 -36.50128 -33.55292 -32.51610 -30.76173 -28.95973 -26.88351 -26.33335 -25.05842 -22.25683 -20.94959 -19.96342 -19.22628 -16.89162 -15.97779 -15.32800 -14.77579 -14.52468 -14.00254 -13.91455 -13.14519 -12.87097 -12.49353 -12.42365 -12.36068 -11.74254 -11.38425 -11.24156 -11.09539 -10.83128 -10.74133 -10.40622 -10.19565 -9.96867 -9.71660 -9.20798 -8.92479 -8.28570 -8.10784 -7.12536 -5.91550 -3.94006 2.06636 2.67560 3.10017 3.39486 3.42966 3.46825 4.49772 4.58132 4.98061 5.04836 5.25428 5.29133 5.39998 5.41777 5.70086 5.90758 6.01936 6.16408 6.26299 6.52724 6.66904 6.77372 6.87087 6.92686 6.98037 7.16501 7.20445 7.48759 7.82036 7.90461 7.99005 8.37918 8.66857 8.73509 9.13426 9.71020 11.15535 Molecular weight = 223.14amu Principal moments of inertia in cm(-1) A = 0.051759 B = 0.005856 C = 0.005752 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 540.839241 B = 4780.288018 C = 4866.357745 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.168 4.168 2 C 0.211 3.789 3 H 0.035 0.965 4 C -0.492 4.492 5 H 0.062 0.938 6 C 0.054 3.946 7 N -0.899 5.899 8 Si 0.896 3.104 9 H -0.278 1.278 10 H -0.290 1.290 11 H -0.279 1.279 12 N -0.676 5.676 13 C 0.159 3.841 14 H 0.037 0.963 15 C -0.128 4.128 16 C -0.220 4.220 17 C 0.071 3.929 18 N -0.309 5.309 19 N -0.386 5.386 20 C 0.106 3.894 21 C 0.046 3.954 22 H 0.087 0.913 23 H 0.003 0.997 24 H 0.026 0.974 25 H 0.259 0.741 26 H 0.326 0.674 27 H 0.056 0.944 28 H 0.039 0.961 29 H 0.058 0.942 30 H 0.187 0.813 31 H 0.070 0.930 32 H 0.083 0.917 33 H 0.084 0.916 34 H 0.169 0.831 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.571 -0.472 -15.221 15.239 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.227 4.227 2 C 0.104 3.896 3 H 0.053 0.947 4 C -0.530 4.530 5 H 0.080 0.920 6 C -0.146 4.146 7 N -0.539 5.539 8 Si 0.725 3.275 9 H -0.203 1.203 10 H -0.216 1.216 11 H -0.204 1.204 12 N -0.306 5.306 13 C 0.047 3.953 14 H 0.055 0.945 15 C -0.186 4.186 16 C -0.232 4.232 17 C -0.116 4.116 18 N -0.131 5.131 19 N -0.169 5.169 20 C -0.036 4.036 21 C -0.100 4.100 22 H 0.106 0.894 23 H 0.022 0.978 24 H 0.045 0.955 25 H 0.069 0.931 26 H 0.143 0.857 27 H 0.075 0.925 28 H 0.058 0.942 29 H 0.077 0.923 30 H 0.204 0.796 31 H 0.088 0.912 32 H 0.101 0.899 33 H 0.103 0.897 34 H 0.186 0.814 Dipole moment (debyes) X Y Z Total from point charges 0.075 -1.164 -15.964 16.006 hybrid contribution -0.927 0.374 1.244 1.596 sum -0.852 -0.791 -14.720 14.766 Atomic orbital electron populations 1.22430 1.00973 0.99073 1.00272 1.19193 0.89352 0.94512 0.86580 0.94726 1.21136 1.29968 1.12319 0.89622 0.92010 1.24944 0.95423 0.95232 0.98974 1.69877 1.37490 1.23269 1.23294 0.86589 0.79172 0.79602 0.82153 1.20323 1.21575 1.20446 1.60896 1.57980 1.08813 1.02946 1.19702 0.96653 0.92755 0.86152 0.94497 1.21722 0.97329 0.99153 1.00388 1.20420 1.06008 0.98899 0.97880 1.23829 0.99068 0.95496 0.93161 1.77313 1.12048 1.12404 1.11287 1.48378 1.39828 1.15995 1.12684 1.21740 0.98683 1.03381 0.79766 1.22274 1.02166 0.95284 0.90248 0.89402 0.97761 0.95491 0.93138 0.85660 0.92530 0.94178 0.92279 0.79624 0.91186 0.89885 0.89686 0.81424 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -4.09 8.92 37.16 0.33 -3.76 16 2 C 0.21 5.30 2.38 -68.87 -0.16 5.13 16 3 H 0.03 0.95 7.11 -51.93 -0.37 0.58 16 4 C -0.49 -13.63 8.84 -34.44 -0.30 -13.93 16 5 H 0.06 1.72 7.81 -52.49 -0.41 1.31 16 6 C 0.05 1.52 5.30 -17.82 -0.09 1.42 16 7 N -0.90 -25.84 11.32 55.43 0.63 -25.22 16 8 Si 0.90 21.67 29.54 -169.99 -5.02 16.65 16 9 H -0.28 -6.67 7.11 56.52 0.40 -6.27 16 10 H -0.29 -6.95 7.11 56.52 0.40 -6.55 16 11 H -0.28 -6.68 7.11 56.52 0.40 -6.28 16 12 N -0.68 -14.32 5.84 -102.17 -0.60 -14.92 16 13 C 0.16 2.87 2.86 -68.86 -0.20 2.68 16 14 H 0.04 0.70 7.11 -51.93 -0.37 0.33 16 15 C -0.13 -2.21 9.38 37.16 0.35 -1.86 16 16 C -0.22 -3.54 4.81 -105.05 -0.51 -4.05 16 17 C 0.07 1.14 11.46 -17.37 -0.20 0.94 16 18 N -0.31 -4.95 12.58 30.62 0.39 -4.56 16 19 N -0.39 -5.17 4.01 -68.16 -0.27 -5.45 16 20 C 0.11 0.88 11.47 59.85 0.69 1.57 16 21 C 0.05 0.63 11.40 -17.23 -0.20 0.44 16 22 H 0.09 2.36 6.07 -51.93 -0.32 2.05 16 23 H 0.00 0.08 7.43 -51.93 -0.39 -0.31 16 24 H 0.03 0.63 8.13 -51.93 -0.42 0.21 16 25 H 0.26 7.14 8.31 -40.82 -0.34 6.80 16 26 H 0.33 6.81 7.89 -39.29 -0.31 6.50 16 27 H 0.06 0.97 8.14 -51.93 -0.42 0.55 16 28 H 0.04 0.60 8.14 -51.93 -0.42 0.17 16 29 H 0.06 1.12 7.43 -51.93 -0.39 0.73 16 30 H 0.19 2.85 8.06 -52.49 -0.42 2.42 16 31 H 0.07 0.51 8.14 -51.93 -0.42 0.09 16 32 H 0.08 0.48 8.14 -51.93 -0.42 0.05 16 33 H 0.08 0.65 8.14 -51.92 -0.42 0.22 16 34 H 0.17 1.79 8.06 -52.49 -0.42 1.37 16 LS Contribution 285.55 15.07 4.30 4.30 Total: -1.00 -30.69 285.55 -5.93 -36.62 By element: Atomic # 1 Polarization: 9.05 SS G_CDS: -5.06 Total: 3.99 kcal Atomic # 6 Polarization: -11.12 SS G_CDS: -0.29 Total: -11.42 kcal Atomic # 7 Polarization: -50.28 SS G_CDS: 0.14 Total: -50.14 kcal Atomic # 14 Polarization: 21.67 SS G_CDS: -5.02 Total: 16.65 kcal Total LS contribution 4.30 Total: 4.30 kcal Total: -30.69 -5.93 -36.62 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000308449423.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 112.936 kcal (2) G-P(sol) polarization free energy of solvation -30.691 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 82.245 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.930 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.621 kcal (6) G-S(sol) free energy of system = (1) + (5) 76.315 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.24 seconds