Wall clock time and date at job start Mon Mar 30 2020 02:38:19 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 H 1.09003 * 109.46868 * 2 1 4 4 C 1.50693 * 109.47646 * 120.00245 * 2 1 3 5 5 H 1.08002 * 120.00364 * 119.99785 * 4 2 1 6 6 C 1.37885 * 119.99875 * 300.00471 * 4 2 1 7 7 N 1.31514 * 119.99793 * 359.97438 * 6 4 2 8 8 Si 1.86794 * 120.00348 * 179.97438 * 6 4 2 9 9 H 1.48507 * 109.46809 * 59.99557 * 8 6 4 10 10 H 1.48496 * 109.47537 * 179.97438 * 8 6 4 11 11 H 1.48504 * 109.46866 * 300.00204 * 8 6 4 12 12 N 1.46900 * 109.47367 * 240.00480 * 2 1 3 13 13 C 1.46905 * 111.00350 * 84.99466 * 12 2 1 14 14 H 1.09002 * 109.46900 * 325.00410 * 13 12 2 15 15 C 1.52999 * 109.46913 * 85.00328 * 13 12 2 16 16 C 1.50700 * 109.47353 * 205.00421 * 13 12 2 17 17 C 1.39873 * 126.03825 * 320.02553 * 16 13 12 18 18 N 1.30832 * 108.20166 * 179.97438 * 17 16 13 19 19 N 1.40085 * 108.20599 * 359.97438 * 18 17 16 20 20 C 1.46500 * 126.03813 * 179.74170 * 19 18 17 21 21 C 1.34943 * 107.92716 * 0.02562 * 19 18 17 22 22 H 1.08996 * 109.46988 * 299.99721 * 1 2 3 23 23 H 1.09001 * 109.47002 * 60.00102 * 1 2 3 24 24 H 1.08996 * 109.46548 * 179.97438 * 1 2 3 25 25 H 0.97002 * 119.99911 * 180.02562 * 7 6 4 26 26 H 1.00905 * 110.99852 * 321.04533 * 12 2 1 27 27 H 1.09002 * 109.47270 * 60.00309 * 15 13 12 28 28 H 1.08998 * 109.46961 * 180.02562 * 15 13 12 29 29 H 1.08997 * 109.46831 * 299.99758 * 15 13 12 30 30 H 1.07999 * 125.89561 * 359.95652 * 17 16 13 31 31 H 1.08997 * 109.47763 * 90.01881 * 20 19 18 32 32 H 1.09004 * 109.47211 * 210.02331 * 20 19 18 33 33 H 1.09012 * 109.46942 * 330.02017 * 20 19 18 34 34 H 1.07996 * 126.13000 * 180.02562 * 21 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0325 -0.7104 1.2303 5 1 2.6534 -1.5885 1.1312 6 6 1.6993 -0.2394 2.4827 7 7 0.9435 0.8301 2.6034 8 14 2.3215 -1.1203 4.0079 9 1 3.8065 -1.1208 4.0080 10 1 1.8271 -0.4200 5.2204 11 1 1.8261 -2.5203 4.0076 12 7 2.0197 -0.6924 -1.1995 13 6 2.0825 0.2227 -2.3470 14 1 1.2576 0.9330 -2.2907 15 6 3.4111 0.9810 -2.3224 16 6 1.9786 -0.5674 -3.6260 17 6 2.5846 -1.8017 -3.8822 18 7 2.2635 -2.1706 -5.0957 19 7 1.4413 -1.1815 -5.6507 20 6 0.8623 -1.1971 -6.9963 21 6 1.2818 -0.2087 -4.7291 22 1 -0.3633 0.5138 0.8900 23 1 -0.3633 0.5138 -0.8900 24 1 -0.3632 -1.0277 -0.0005 25 1 0.7095 1.1616 3.4844 26 1 1.4496 -1.4978 -1.4101 27 1 4.2360 0.2707 -2.3787 28 1 3.4574 1.6604 -3.1736 29 1 3.4861 1.5526 -1.3974 30 1 3.2099 -2.3546 -3.1968 31 1 -0.1110 -1.6868 -6.9675 32 1 0.7437 -0.1738 -7.3527 33 1 1.5235 -1.7422 -7.6700 34 1 0.7015 0.6940 -4.8500 RHF calculation, no. of doubly occupied orbitals= 42 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000308449423.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:38:19 Heat of formation + Delta-G solvation = 55.741784 kcal Electronic energy + Delta-G solvation = -15197.901788 eV Core-core repulsion = 12745.665435 eV Total energy + Delta-G solvation = -2452.236353 eV No. of doubly occupied orbitals = 42 Molecular weight (most abundant/longest-lived isotopes) = 223.138 amu Computer time = 0.24 seconds Orbital eigenvalues (eV) -42.10285 -38.17263 -35.21660 -33.80098 -32.44875 -30.20808 -28.57634 -27.34300 -27.15190 -23.69851 -22.23100 -21.49493 -20.61637 -18.50529 -17.53973 -16.72215 -16.28498 -16.01461 -15.48635 -15.10952 -14.68333 -14.36406 -13.74461 -13.58160 -13.55860 -13.29407 -13.08798 -12.92274 -12.72429 -12.63107 -12.35327 -12.20415 -12.02795 -11.73553 -11.30452 -10.96685 -10.41917 -10.28753 -9.26540 -8.85731 -8.03846 -6.13845 0.98244 1.46411 1.47998 1.55554 1.76040 1.88608 2.48782 3.24494 3.59265 3.83803 4.08647 4.33071 4.46248 4.47892 4.52110 4.71887 4.72470 4.82002 4.90147 4.93081 4.98365 5.10327 5.16944 5.30493 5.47938 5.55855 5.73781 5.76449 5.91301 6.19585 6.36250 6.74190 6.80546 6.95157 7.03270 7.55923 9.01448 Molecular weight = 223.14amu Principal moments of inertia in cm(-1) A = 0.051759 B = 0.005856 C = 0.005752 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 540.839241 B = 4780.288018 C = 4866.357745 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.155 4.155 2 C 0.218 3.782 3 H 0.007 0.993 4 C -0.512 4.512 5 H 0.053 0.947 6 C 0.009 3.991 7 N -0.923 5.923 8 Si 0.958 3.042 9 H -0.274 1.274 10 H -0.285 1.285 11 H -0.273 1.273 12 N -0.677 5.677 13 C 0.164 3.836 14 H 0.032 0.968 15 C -0.122 4.122 16 C -0.246 4.246 17 C 0.059 3.941 18 N -0.333 5.333 19 N -0.380 5.380 20 C 0.094 3.906 21 C 0.063 3.937 22 H 0.061 0.939 23 H 0.024 0.976 24 H 0.026 0.974 25 H 0.260 0.740 26 H 0.328 0.672 27 H 0.052 0.948 28 H 0.066 0.934 29 H 0.033 0.967 30 H 0.182 0.818 31 H 0.083 0.917 32 H 0.115 0.885 33 H 0.091 0.909 34 H 0.203 0.797 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.002 -0.512 -16.681 16.719 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.214 4.214 2 C 0.109 3.891 3 H 0.025 0.975 4 C -0.550 4.550 5 H 0.072 0.928 6 C -0.189 4.189 7 N -0.564 5.564 8 Si 0.784 3.216 9 H -0.200 1.200 10 H -0.211 1.211 11 H -0.199 1.199 12 N -0.307 5.307 13 C 0.053 3.947 14 H 0.050 0.950 15 C -0.180 4.180 16 C -0.258 4.258 17 C -0.126 4.126 18 N -0.156 5.156 19 N -0.162 5.162 20 C -0.045 4.045 21 C -0.085 4.085 22 H 0.079 0.921 23 H 0.043 0.957 24 H 0.045 0.955 25 H 0.069 0.931 26 H 0.145 0.855 27 H 0.071 0.929 28 H 0.085 0.915 29 H 0.053 0.947 30 H 0.199 0.801 31 H 0.102 0.898 32 H 0.134 0.866 33 H 0.109 0.891 34 H 0.220 0.780 Dipole moment (debyes) X Y Z Total from point charges -0.350 -1.223 -17.460 17.506 hybrid contribution -0.824 0.410 1.564 1.814 sum -1.174 -0.813 -15.896 15.960 Atomic orbital electron populations 1.22237 1.00401 0.98885 0.99922 1.18934 0.89637 0.92944 0.87568 0.97535 1.21447 1.30131 1.12333 0.91128 0.92829 1.25682 0.95577 0.95907 1.01748 1.70002 1.38213 1.24301 1.23861 0.85619 0.78641 0.78638 0.78710 1.19969 1.21089 1.19855 1.60769 1.57573 1.09216 1.03156 1.19617 0.96641 0.92305 0.86093 0.95039 1.21667 0.96930 0.99154 1.00227 1.20207 1.08372 0.99291 0.97926 1.23821 0.99509 0.95807 0.93487 1.77259 1.13258 1.13767 1.11294 1.48786 1.38521 1.14920 1.14014 1.22184 0.99078 1.05888 0.77383 1.22716 1.00670 0.95866 0.89243 0.92062 0.95662 0.95450 0.93138 0.85478 0.92934 0.91495 0.94736 0.80071 0.89823 0.86645 0.89073 0.78036 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -7.56 8.92 71.98 0.64 -6.92 16 2 C 0.22 11.09 2.38 44.17 0.11 11.19 16 3 H 0.01 0.38 7.11 -2.39 -0.02 0.36 16 4 C -0.51 -28.74 8.84 25.60 0.23 -28.52 16 5 H 0.05 3.03 7.81 -2.91 -0.02 3.01 16 6 C 0.01 0.49 5.30 84.66 0.45 0.94 16 7 N -0.92 -53.66 11.32 21.45 0.24 -53.42 16 8 Si 0.96 44.58 29.54 68.60 2.03 46.61 16 9 H -0.27 -12.54 7.11 99.48 0.71 -11.84 16 10 H -0.29 -12.98 7.11 99.48 0.71 -12.27 16 11 H -0.27 -12.40 7.11 99.48 0.71 -11.69 16 12 N -0.68 -28.87 5.84 -477.15 -2.78 -31.65 16 13 C 0.16 5.85 2.86 44.17 0.13 5.98 16 14 H 0.03 1.16 7.11 -2.39 -0.02 1.14 16 15 C -0.12 -4.16 9.38 71.98 0.68 -3.49 16 16 C -0.25 -7.56 4.81 -20.14 -0.10 -7.66 16 17 C 0.06 1.87 11.46 85.24 0.98 2.85 16 18 N -0.33 -10.21 12.58 -57.02 -0.72 -10.93 16 19 N -0.38 -9.11 4.01 -369.56 -1.48 -10.59 16 20 C 0.09 1.22 11.47 127.77 1.47 2.69 16 21 C 0.06 1.53 11.40 83.54 0.95 2.48 16 22 H 0.06 3.32 6.07 -2.39 -0.01 3.31 16 23 H 0.02 1.08 7.43 -2.39 -0.02 1.06 16 24 H 0.03 1.28 8.13 -2.39 -0.02 1.26 16 25 H 0.26 14.42 8.31 -92.71 -0.77 13.65 16 26 H 0.33 13.72 7.89 -89.69 -0.71 13.01 16 27 H 0.05 1.81 8.14 -2.39 -0.02 1.79 16 28 H 0.07 1.89 8.14 -2.39 -0.02 1.87 16 29 H 0.03 1.32 7.43 -2.39 -0.02 1.30 16 30 H 0.18 5.65 8.06 -2.91 -0.02 5.63 16 31 H 0.08 0.91 8.14 -2.39 -0.02 0.89 16 32 H 0.12 0.78 8.14 -2.39 -0.02 0.76 16 33 H 0.09 1.10 8.14 -2.38 -0.02 1.09 16 34 H 0.20 3.42 8.06 -2.91 -0.02 3.40 16 Total: -1.00 -65.90 285.55 3.18 -62.72 By element: Atomic # 1 Polarization: 17.35 SS G_CDS: 0.37 Total: 17.72 kcal Atomic # 6 Polarization: -25.97 SS G_CDS: 5.52 Total: -20.45 kcal Atomic # 7 Polarization: -101.85 SS G_CDS: -4.74 Total: -106.59 kcal Atomic # 14 Polarization: 44.58 SS G_CDS: 2.03 Total: 46.61 kcal Total: -65.90 3.18 -62.72 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000308449423.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 118.458 kcal (2) G-P(sol) polarization free energy of solvation -65.895 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 52.563 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.179 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.716 kcal (6) G-S(sol) free energy of system = (1) + (5) 55.742 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.24 seconds