Wall clock time and date at job start Mon Mar 30 2020 03:20:19 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31523 * 1 3 3 Si 1.86793 * 119.99825 * 2 1 4 4 H 1.48502 * 109.47294 * 180.02562 * 3 2 1 5 5 H 1.48503 * 109.47394 * 299.99968 * 3 2 1 6 6 H 1.48499 * 109.47384 * 60.00147 * 3 2 1 7 7 C 1.37872 * 119.99548 * 180.02562 * 2 1 3 8 8 H 1.08010 * 119.99498 * 179.97438 * 7 2 1 9 9 C 1.50698 * 120.00736 * 359.97438 * 7 2 1 10 10 C 1.52993 * 109.47393 * 179.97438 * 9 7 2 11 11 N 1.46905 * 109.47039 * 180.02562 * 10 9 7 12 12 C 1.46901 * 110.99870 * 180.02562 * 11 10 9 13 13 H 1.09004 * 110.01574 * 325.06059 * 12 11 10 14 14 C 1.53874 * 110.03315 * 86.45404 * 12 11 10 15 15 C 1.54265 * 106.59847 * 119.28447 * 14 12 11 16 16 C 1.54892 * 104.19698 * 23.60873 * 15 14 12 17 17 C 1.54266 * 110.03244 * 203.62046 * 12 11 10 18 18 H 1.08997 * 110.48450 * 335.78516 * 17 12 11 19 19 C 1.52997 * 110.48553 * 98.42317 * 17 12 11 20 20 C 1.53000 * 117.50106 * 248.62295 * 19 17 12 21 21 C 1.53002 * 60.00414 * 252.51371 * 20 19 17 22 22 H 0.97002 * 119.99722 * 0.02562 * 1 2 3 23 23 H 1.09001 * 109.46495 * 59.99680 * 9 7 2 24 24 H 1.08998 * 109.46910 * 300.00180 * 9 7 2 25 25 H 1.09001 * 109.47393 * 60.00436 * 10 9 7 26 26 H 1.08998 * 109.47408 * 300.00082 * 10 9 7 27 27 H 1.00901 * 110.99869 * 56.04956 * 11 10 9 28 28 H 1.09004 * 110.02700 * 238.56796 * 14 12 11 29 29 H 1.08998 * 110.03377 * 359.97438 * 14 12 11 30 30 H 1.08995 * 110.48485 * 142.28761 * 15 14 12 31 31 H 1.09001 * 110.48570 * 264.92821 * 15 14 12 32 32 H 1.09001 * 110.75345 * 80.36848 * 16 15 14 33 33 H 1.08996 * 110.75531 * 203.74680 * 16 15 14 34 34 H 1.09002 * 115.55406 * 34.33450 * 19 17 12 35 35 H 1.08998 * 117.50169 * 0.02562 * 20 19 17 36 36 H 1.08995 * 117.50018 * 145.02665 * 20 19 17 37 37 H 1.09001 * 117.49694 * 252.51371 * 21 20 19 38 38 H 1.08997 * 117.50026 * 107.48476 * 21 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 3.7092 1.3464 -0.0006 5 1 1.8904 2.3965 -1.2125 6 1 1.8904 2.3964 1.2125 7 6 2.0045 -1.1941 -0.0005 8 1 3.0846 -1.1940 -0.0010 9 6 1.2511 -2.4992 -0.0005 10 6 2.2453 -3.6620 -0.0018 11 7 1.5107 -4.9343 -0.0024 12 6 2.4352 -6.0759 -0.0031 13 1 3.3225 -5.8372 -0.5896 14 6 2.8365 -6.4300 1.4396 15 6 2.3669 -7.8789 1.6846 16 6 2.2816 -8.4956 0.2663 17 6 1.7358 -7.3220 -0.5844 18 1 0.6547 -7.2398 -0.4720 19 6 2.1098 -7.5081 -2.0562 20 6 1.0114 -7.2855 -3.0979 21 6 1.5015 -8.7027 -2.7940 22 1 -0.4850 0.8401 -0.0004 23 1 0.6241 -2.5566 -0.8903 24 1 0.6248 -2.5571 0.8897 25 1 2.8726 -3.6048 0.8877 26 1 2.8713 -3.6039 -0.8922 27 1 0.8740 -4.9838 -0.7836 28 1 3.9186 -6.3640 1.5530 29 1 2.3457 -5.7545 2.1402 30 1 3.0940 -8.4180 2.2919 31 1 1.3878 -7.8867 2.1635 32 1 3.2686 -8.7993 -0.0828 33 1 1.5896 -9.3375 0.2521 34 1 3.1248 -7.2148 -2.3242 35 1 0.0225 -7.0059 -2.7347 36 1 1.3037 -6.8455 -4.0513 37 1 2.1164 -9.1949 -3.5476 38 1 0.8350 -9.3558 -2.2308 RHF calculation, no. of doubly occupied orbitals= 43 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000308510908.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:20:19 Heat of formation + Delta-G solvation = -3.848702 kcal Electronic energy + Delta-G solvation = -15298.141235 eV Core-core repulsion = 12946.861188 eV Total energy + Delta-G solvation = -2351.280047 eV No. of doubly occupied orbitals = 43 Molecular weight (most abundant/longest-lived isotopes) = 223.163 amu Computer time = 0.27 seconds Orbital eigenvalues (eV) -39.16713 -36.27742 -34.51474 -32.58956 -29.47841 -28.52318 -26.41043 -23.76941 -22.47180 -21.61704 -20.79913 -19.58056 -19.49019 -16.39893 -15.89640 -15.76555 -14.60477 -14.39855 -14.18174 -13.78293 -13.56555 -12.83686 -12.48023 -12.28316 -11.68854 -11.51656 -11.46933 -11.08790 -10.98512 -10.93271 -10.88553 -10.64732 -10.46184 -10.37363 -10.05537 -9.91576 -9.80271 -9.28161 -9.07863 -8.32669 -7.72293 -5.97125 -3.99335 3.32737 3.39972 3.44221 3.76529 4.44444 4.53124 4.69741 4.74598 4.96904 5.01194 5.11995 5.24201 5.38904 5.47298 5.58762 5.64875 5.68349 5.72457 5.84451 5.91163 5.96336 6.06256 6.10137 6.12159 6.23912 6.37593 6.41722 6.45262 6.50507 6.63252 7.05228 7.59112 7.79061 7.89160 8.05416 8.14077 8.47907 9.08338 9.64331 11.14424 Molecular weight = 223.16amu Principal moments of inertia in cm(-1) A = 0.035772 B = 0.005413 C = 0.004966 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 782.547884 B = 5171.929155 C = 5636.546419 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.894 5.894 2 C 0.057 3.943 3 Si 0.892 3.108 4 H -0.273 1.273 5 H -0.284 1.284 6 H -0.284 1.284 7 C -0.519 4.519 8 H 0.054 0.946 9 C 0.025 3.975 10 C 0.067 3.933 11 N -0.684 5.684 12 C 0.090 3.910 13 H 0.040 0.960 14 C -0.117 4.117 15 C -0.121 4.121 16 C -0.112 4.112 17 C -0.064 4.064 18 H 0.083 0.917 19 C -0.145 4.145 20 C -0.180 4.180 21 C -0.180 4.180 22 H 0.259 0.741 23 H 0.013 0.987 24 H 0.024 0.976 25 H 0.056 0.944 26 H 0.013 0.987 27 H 0.335 0.665 28 H 0.055 0.945 29 H 0.078 0.922 30 H 0.059 0.941 31 H 0.065 0.935 32 H 0.065 0.935 33 H 0.062 0.938 34 H 0.100 0.900 35 H 0.096 0.904 36 H 0.091 0.909 37 H 0.089 0.911 38 H 0.092 0.908 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.916 -17.262 -2.135 17.829 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.533 5.533 2 C -0.144 4.144 3 Si 0.720 3.280 4 H -0.198 1.198 5 H -0.211 1.211 6 H -0.210 1.210 7 C -0.558 4.558 8 H 0.072 0.928 9 C -0.012 4.012 10 C -0.062 4.062 11 N -0.315 5.315 12 C -0.020 4.020 13 H 0.058 0.942 14 C -0.156 4.156 15 C -0.159 4.159 16 C -0.150 4.150 17 C -0.083 4.083 18 H 0.101 0.899 19 C -0.163 4.163 20 C -0.217 4.217 21 C -0.217 4.217 22 H 0.069 0.931 23 H 0.031 0.969 24 H 0.043 0.957 25 H 0.075 0.925 26 H 0.031 0.969 27 H 0.153 0.847 28 H 0.073 0.927 29 H 0.096 0.904 30 H 0.078 0.922 31 H 0.084 0.916 32 H 0.084 0.916 33 H 0.080 0.920 34 H 0.118 0.882 35 H 0.114 0.886 36 H 0.110 0.890 37 H 0.108 0.892 38 H 0.110 0.890 Dipole moment (debyes) X Y Z Total from point charges 3.691 -17.136 -1.450 17.589 hybrid contribution 0.795 1.074 -1.010 1.675 sum 4.486 -16.062 -2.460 16.857 Atomic orbital electron populations 1.69991 1.06024 1.26411 1.50902 1.25002 0.94830 0.99189 0.95366 0.86544 0.80085 0.83844 0.77563 1.19789 1.21055 1.20978 1.21229 0.93000 0.91070 1.50538 0.92776 1.19068 0.94048 0.90509 0.97624 1.22169 0.96904 0.88681 0.98415 1.60777 1.19471 1.01888 1.49399 1.22158 0.94238 0.90384 0.95268 0.94192 1.22212 0.99822 0.96271 0.97249 1.22314 1.01116 0.95963 0.96501 1.22425 1.00695 0.96887 0.95004 1.21780 1.00490 0.94831 0.91218 0.89876 1.22380 0.98020 1.02814 0.93061 1.23017 0.99292 0.99126 1.00267 1.22886 1.04183 0.91272 1.03404 0.93090 0.96888 0.95716 0.92501 0.96874 0.84690 0.92661 0.90370 0.92232 0.91632 0.91643 0.91974 0.88169 0.88562 0.89020 0.89242 0.88978 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -27.33 13.29 55.43 0.74 -26.59 16 2 C 0.06 1.67 5.46 -17.82 -0.10 1.57 16 3 Si 0.89 21.96 29.54 -169.99 -5.02 16.94 16 4 H -0.27 -6.58 7.11 56.52 0.40 -6.18 16 5 H -0.28 -6.91 7.11 56.52 0.40 -6.51 16 6 H -0.28 -6.90 7.11 56.52 0.40 -6.50 16 7 C -0.52 -15.03 9.11 -34.44 -0.31 -15.35 16 8 H 0.05 1.53 7.74 -52.48 -0.41 1.12 16 9 C 0.02 0.66 5.23 -27.89 -0.15 0.52 16 10 C 0.07 1.45 5.45 -3.82 -0.02 1.43 16 11 N -0.68 -12.53 6.15 -105.54 -0.65 -13.18 16 12 C 0.09 1.35 2.81 -66.59 -0.19 1.16 16 13 H 0.04 0.63 7.34 -51.93 -0.38 0.25 16 14 C -0.12 -1.65 6.48 -25.61 -0.17 -1.82 16 15 C -0.12 -1.40 6.83 -25.07 -0.17 -1.57 16 16 C -0.11 -1.21 6.16 -24.74 -0.15 -1.37 16 17 C -0.06 -0.80 2.44 -88.96 -0.22 -1.02 16 18 H 0.08 1.11 7.82 -51.93 -0.41 0.70 16 19 C -0.14 -1.67 5.10 -90.62 -0.46 -2.13 16 20 C -0.18 -2.01 10.19 -26.73 -0.27 -2.28 16 21 C -0.18 -1.79 10.06 -26.72 -0.27 -2.06 16 22 H 0.26 7.44 8.31 -40.82 -0.34 7.11 16 23 H 0.01 0.36 8.14 -51.93 -0.42 -0.06 16 24 H 0.02 0.71 8.14 -51.93 -0.42 0.28 16 25 H 0.06 1.25 8.10 -51.93 -0.42 0.83 16 26 H 0.01 0.28 8.07 -51.93 -0.42 -0.13 16 27 H 0.34 6.03 8.35 -39.29 -0.33 5.70 16 28 H 0.05 0.73 8.14 -51.93 -0.42 0.31 16 29 H 0.08 1.25 7.92 -51.93 -0.41 0.84 16 30 H 0.06 0.61 8.14 -51.93 -0.42 0.18 16 31 H 0.06 0.77 8.14 -51.93 -0.42 0.35 16 32 H 0.06 0.68 8.06 -51.93 -0.42 0.26 16 33 H 0.06 0.61 8.14 -51.93 -0.42 0.18 16 34 H 0.10 1.19 7.86 -51.93 -0.41 0.78 16 35 H 0.10 1.09 8.09 -51.93 -0.42 0.67 16 36 H 0.09 0.99 8.14 -51.93 -0.42 0.57 16 37 H 0.09 0.79 8.14 -51.93 -0.42 0.37 16 38 H 0.09 0.86 8.14 -51.93 -0.42 0.44 16 LS Contribution 306.56 15.07 4.62 4.62 Total: -1.00 -29.82 306.56 -9.75 -39.57 By element: Atomic # 1 Polarization: 8.52 SS G_CDS: -6.96 Total: 1.56 kcal Atomic # 6 Polarization: -20.44 SS G_CDS: -2.47 Total: -22.92 kcal Atomic # 7 Polarization: -39.86 SS G_CDS: 0.09 Total: -39.77 kcal Atomic # 14 Polarization: 21.96 SS G_CDS: -5.02 Total: 16.94 kcal Total LS contribution 4.62 Total: 4.62 kcal Total: -29.82 -9.75 -39.57 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000308510908.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 35.721 kcal (2) G-P(sol) polarization free energy of solvation -29.822 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 5.899 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.748 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.570 kcal (6) G-S(sol) free energy of system = (1) + (5) -3.849 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.27 seconds